Wall clock time and date at job start Mon Mar 30 2020 04:39:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53007 * 109.47223 * 2 1
4 4 C 1.53008 * 109.46926 * 119.99599 * 2 1 3
5 5 H 1.08993 * 109.49032 * 60.02628 * 4 2 1
6 6 C 1.53090 * 109.48163 * 180.02562 * 4 2 1
7 7 C 1.53179 * 109.16133 * 177.59232 * 6 4 2
8 8 H 1.08993 * 109.61744 * 62.92806 * 7 6 4
9 9 C 1.53008 * 109.53996 * 183.14940 * 7 6 4
10 10 N 1.46902 * 109.46622 * 184.55470 * 9 7 6
11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7
12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9
13 13 H 1.08005 * 119.99734 * 0.02562 * 12 11 10
14 14 C 1.37876 * 120.00116 * 180.02562 * 12 11 10
15 15 N 1.31516 * 119.99947 * 359.97438 * 14 12 11
16 16 Si 1.86795 * 120.00011 * 179.97438 * 14 12 11
17 17 H 1.48500 * 109.47339 * 359.97438 * 16 14 12
18 18 H 1.48507 * 109.47157 * 120.00251 * 16 14 12
19 19 H 1.48502 * 109.47214 * 239.99759 * 16 14 12
20 20 C 1.53168 * 109.03489 * 303.01252 * 7 6 4
21 21 C 1.53093 * 109.16422 * 56.98557 * 20 7 6
22 22 O 1.42900 * 109.41259 * 302.39028 * 21 20 7
23 23 H 1.08992 * 109.47302 * 300.00836 * 1 2 3
24 24 H 1.09007 * 109.46639 * 60.00365 * 1 2 3
25 25 H 1.08997 * 109.47396 * 180.02562 * 1 2 3
26 26 H 1.08995 * 109.47806 * 239.99161 * 2 1 3
27 27 H 1.08998 * 109.46857 * 179.97438 * 3 2 1
28 28 H 1.09000 * 109.46667 * 299.99361 * 3 2 1
29 29 H 1.08990 * 109.47201 * 59.99641 * 3 2 1
30 30 H 1.08998 * 109.52644 * 57.68213 * 6 4 2
31 31 H 1.09001 * 109.51887 * 297.49631 * 6 4 2
32 32 H 1.08990 * 109.46924 * 64.55608 * 9 7 6
33 33 H 1.09004 * 109.46978 * 304.55485 * 9 7 6
34 34 H 1.00896 * 111.00219 * 303.95583 * 10 9 7
35 35 H 1.09002 * 109.46991 * 299.99841 * 11 10 9
36 36 H 1.09000 * 109.47202 * 60.00133 * 11 10 9
37 37 H 0.96998 * 120.00296 * 180.02562 * 15 14 12
38 38 H 1.09005 * 109.52131 * 176.88443 * 20 7 6
39 39 H 1.08992 * 109.52785 * 297.01521 * 20 7 6
40 40 H 1.09006 * 109.48319 * 62.37241 * 21 20 7
41 41 H 1.09003 * 109.48239 * 182.40287 * 21 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0399 -0.7212 1.2494
5 1 1.6772 -1.7490 1.2495
6 6 3.5708 -0.7208 1.2500
7 6 4.0733 -1.3910 2.5325
8 1 3.7523 -2.4324 2.5511
9 6 5.6012 -1.3254 2.5794
10 7 6.0871 -2.0628 3.7534
11 6 7.5535 -2.0218 3.8309
12 6 8.0140 -2.7874 5.0445
13 1 7.2897 -3.2578 5.6930
14 6 9.3598 -2.8875 5.3268
15 7 10.2418 -2.3151 4.5367
16 14 9.9305 -3.8359 6.8315
17 1 8.7506 -4.3798 7.5507
18 1 10.8111 -4.9539 6.4073
19 1 10.6836 -2.9274 7.7330
20 6 3.4914 -0.6536 3.7424
21 6 1.9636 -0.6565 3.6456
22 8 1.5644 -0.0471 2.4162
23 1 -0.3633 0.5139 0.8898
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3634 -1.0276 0.0005
26 1 1.8934 -0.5139 -0.8898
27 1 3.1300 1.4425 0.0005
28 1 1.6767 1.9563 -0.8901
29 1 1.6767 1.9564 0.8899
30 1 3.9349 0.3057 1.2087
31 1 3.9355 -1.2727 0.3836
32 1 5.9183 -0.2848 2.6471
33 1 6.0120 -1.7722 1.6740
34 1 5.6698 -1.7086 4.6010
35 1 7.9775 -2.4738 2.9341
36 1 7.8846 -0.9861 3.9071
37 1 11.1886 -2.3858 4.7351
38 1 3.7992 -1.1575 4.6586
39 1 3.8547 0.3739 3.7521
40 1 1.5992 -1.6834 3.6774
41 1 1.5453 -0.0963 4.4818
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308850176.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:39:39
Heat of formation + Delta-G solvation = -78.890430 kcal
Electronic energy + Delta-G solvation = -17807.379974 eV
Core-core repulsion = 15106.852203 eV
Total energy + Delta-G solvation = -2700.527771 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.79415 -36.21817 -35.12533 -33.45453 -31.83729 -30.06647 -27.68120 -27.18542
-25.31187 -23.56338 -22.60693 -21.27618 -19.84908 -19.75546 -16.52528 -16.25389
-15.75353 -15.17495 -14.93764 -14.70145 -14.32422 -13.85440 -13.84860 -13.16005
-13.05470 -12.92710 -12.35620 -12.14581 -11.92021 -11.68708 -11.52938 -11.32081
-11.27099 -10.93033 -10.84501 -10.73705 -10.68162 -10.44628 -10.20937 -10.10538
-9.88143 -9.37135 -9.07270 -8.48649 -7.28285 -6.03447 -4.05472 3.30625
3.37730 3.42909 3.79073 4.41876 4.56141 4.75193 4.91524 4.95148
5.06319 5.13527 5.16361 5.32450 5.33850 5.44682 5.55865 5.58228
5.61708 5.67750 5.76834 5.82783 5.83901 5.92492 5.97447 6.02879
6.13976 6.18389 6.22622 6.28268 6.36232 6.47447 6.63367 7.26444
7.28788 7.42622 7.78781 8.13160 8.40275 8.62281 9.04204 9.59559
11.07777
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.054138 B = 0.003973 C = 0.003814
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 517.068304 B = 7045.959876 C = 7340.154976
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.088 4.088
3 C -0.146 4.146
4 C 0.097 3.903
5 H 0.055 0.945
6 C -0.146 4.146
7 C -0.086 4.086
8 H 0.076 0.924
9 C 0.066 3.934
10 N -0.691 5.691
11 C 0.193 3.807
12 C -0.513 4.513
13 H 0.062 0.938
14 C 0.055 3.945
15 N -0.898 5.898
16 Si 0.899 3.101
17 H -0.272 1.272
18 H -0.284 1.284
19 H -0.285 1.285
20 C -0.152 4.152
21 C 0.064 3.936
22 O -0.378 6.378
23 H 0.063 0.937
24 H 0.051 0.949
25 H 0.050 0.950
26 H 0.078 0.922
27 H 0.057 0.943
28 H 0.049 0.951
29 H 0.062 0.938
30 H 0.073 0.927
31 H 0.070 0.930
32 H 0.017 0.983
33 H 0.063 0.937
34 H 0.327 0.673
35 H 0.027 0.973
36 H -0.015 1.015
37 H 0.261 0.739
38 H 0.078 0.922
39 H 0.066 0.934
40 H 0.048 0.952
41 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.991 5.330 -7.465 20.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.106 4.106
3 C -0.203 4.203
4 C 0.039 3.961
5 H 0.073 0.927
6 C -0.184 4.184
7 C -0.105 4.105
8 H 0.095 0.905
9 C -0.064 4.064
10 N -0.321 5.321
11 C 0.066 3.934
12 C -0.552 4.552
13 H 0.081 0.919
14 C -0.147 4.147
15 N -0.538 5.538
16 Si 0.727 3.273
17 H -0.196 1.196
18 H -0.210 1.210
19 H -0.211 1.211
20 C -0.190 4.190
21 C -0.013 4.013
22 O -0.297 6.297
23 H 0.082 0.918
24 H 0.070 0.930
25 H 0.069 0.931
26 H 0.097 0.903
27 H 0.076 0.924
28 H 0.068 0.932
29 H 0.081 0.919
30 H 0.092 0.908
31 H 0.089 0.911
32 H 0.035 0.965
33 H 0.081 0.919
34 H 0.144 0.856
35 H 0.045 0.955
36 H 0.003 0.997
37 H 0.070 0.930
38 H 0.097 0.903
39 H 0.085 0.915
40 H 0.066 0.934
41 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -17.910 4.908 -7.815 20.148
hybrid contribution 0.940 0.151 1.081 1.441
sum -16.970 5.060 -6.734 18.946
Atomic orbital electron populations
1.21767 0.94886 1.01519 1.01914 1.21152 0.96283 0.97110 0.96063
1.21823 1.01151 0.95564 1.01750 1.22091 0.93100 0.95189 0.85728
0.92725 1.22305 0.95546 1.02067 0.98475 1.21224 0.96027 0.99612
0.93644 0.90539 1.21883 0.92697 0.95705 0.96131 1.60697 1.10733
1.56896 1.03823 1.19556 0.81063 0.95091 0.97690 1.21233 0.91819
1.32836 1.09317 0.91940 1.25004 0.96735 0.95892 0.97038 1.69976
1.01504 1.44478 1.37812 0.86424 0.78672 0.79604 0.82601 1.19647
1.20979 1.21090 1.22247 0.95772 1.01398 0.99552 1.22541 0.94443
0.97771 0.86509 1.87863 1.74619 1.53826 1.13410 0.91839 0.93029
0.93073 0.90332 0.92412 0.93206 0.91853 0.90812 0.91094 0.96482
0.91872 0.85601 0.95486 0.99681 0.92968 0.90338 0.91482 0.93418
0.89248
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.28 9.05 37.16 0.34 -0.95 16
2 C -0.09 -0.85 2.81 -90.61 -0.25 -1.10 16
3 C -0.15 -1.42 8.70 37.16 0.32 -1.10 16
4 C 0.10 1.09 2.38 -26.68 -0.06 1.03 16
5 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
6 C -0.15 -1.79 4.41 -26.59 -0.12 -1.91 16
7 C -0.09 -1.24 2.49 -90.44 -0.22 -1.46 16
8 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16
9 C 0.07 1.19 5.15 -3.82 -0.02 1.17 16
10 N -0.69 -15.02 6.49 -115.05 -0.75 -15.77 16
11 C 0.19 5.17 5.44 -4.97 -0.03 5.14 16
12 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16
13 H 0.06 1.77 7.81 -52.48 -0.41 1.35 16
14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
15 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16
16 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16
17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16
18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
20 C -0.15 -2.02 5.11 -26.60 -0.14 -2.15 16
21 C 0.06 0.74 6.84 37.21 0.25 1.00 16
22 O -0.38 -4.68 9.06 -35.23 -0.32 -5.00 16
23 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16
24 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16
25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
27 H 0.06 0.58 6.38 -51.93 -0.33 0.25 16
28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16
30 H 0.07 0.93 6.31 -51.93 -0.33 0.61 16
31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
32 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16
33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
34 H 0.33 6.75 7.06 -39.29 -0.28 6.48 16
35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16
36 H -0.01 -0.42 8.14 -51.93 -0.42 -0.84 16
37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16
38 H 0.08 1.08 6.84 -51.93 -0.36 0.72 16
39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16
40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
LS Contribution 318.91 15.07 4.81 4.81
Total: -1.00 -30.19 318.91 -8.44 -38.63
By element:
Atomic # 1 Polarization: 8.44 SS G_CDS: -7.55 Total: 0.89 kcal
Atomic # 6 Polarization: -13.60 SS G_CDS: -0.35 Total: -13.95 kcal
Atomic # 7 Polarization: -42.19 SS G_CDS: -0.01 Total: -42.20 kcal
Atomic # 8 Polarization: -4.68 SS G_CDS: -0.32 Total: -5.00 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -30.19 -8.44 -38.63 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308850176.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.261 kcal
(2) G-P(sol) polarization free energy of solvation -30.185 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.446 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.890 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds