Wall clock time and date at job start Mon Mar 30 2020 04:39:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53007 * 109.47223 * 2 1
4 4 C 1.53008 * 109.46926 * 119.99599 * 2 1 3
5 5 H 1.08993 * 109.49032 * 60.02628 * 4 2 1
6 6 C 1.53090 * 109.48163 * 180.02562 * 4 2 1
7 7 C 1.53179 * 109.16133 * 177.59232 * 6 4 2
8 8 H 1.08993 * 109.61744 * 62.92806 * 7 6 4
9 9 C 1.53008 * 109.53996 * 183.14940 * 7 6 4
10 10 N 1.46902 * 109.46622 * 184.55470 * 9 7 6
11 11 C 1.46906 * 110.99573 * 179.97438 * 10 9 7
12 12 C 1.50699 * 109.46990 * 180.02562 * 11 10 9
13 13 H 1.08005 * 119.99734 * 0.02562 * 12 11 10
14 14 C 1.37876 * 120.00116 * 180.02562 * 12 11 10
15 15 N 1.31516 * 119.99947 * 359.97438 * 14 12 11
16 16 Si 1.86795 * 120.00011 * 179.97438 * 14 12 11
17 17 H 1.48500 * 109.47339 * 359.97438 * 16 14 12
18 18 H 1.48507 * 109.47157 * 120.00251 * 16 14 12
19 19 H 1.48502 * 109.47214 * 239.99759 * 16 14 12
20 20 C 1.53168 * 109.03489 * 303.01252 * 7 6 4
21 21 C 1.53093 * 109.16422 * 56.98557 * 20 7 6
22 22 O 1.42900 * 109.41259 * 302.39028 * 21 20 7
23 23 H 1.08992 * 109.47302 * 300.00836 * 1 2 3
24 24 H 1.09007 * 109.46639 * 60.00365 * 1 2 3
25 25 H 1.08997 * 109.47396 * 180.02562 * 1 2 3
26 26 H 1.08995 * 109.47806 * 239.99161 * 2 1 3
27 27 H 1.08998 * 109.46857 * 179.97438 * 3 2 1
28 28 H 1.09000 * 109.46667 * 299.99361 * 3 2 1
29 29 H 1.08990 * 109.47201 * 59.99641 * 3 2 1
30 30 H 1.08998 * 109.52644 * 57.68213 * 6 4 2
31 31 H 1.09001 * 109.51887 * 297.49631 * 6 4 2
32 32 H 1.08990 * 109.46924 * 64.55608 * 9 7 6
33 33 H 1.09004 * 109.46978 * 304.55485 * 9 7 6
34 34 H 1.00896 * 111.00219 * 303.95583 * 10 9 7
35 35 H 1.09002 * 109.46991 * 299.99841 * 11 10 9
36 36 H 1.09000 * 109.47202 * 60.00133 * 11 10 9
37 37 H 0.96998 * 120.00296 * 180.02562 * 15 14 12
38 38 H 1.09005 * 109.52131 * 176.88443 * 20 7 6
39 39 H 1.08992 * 109.52785 * 297.01521 * 20 7 6
40 40 H 1.09006 * 109.48319 * 62.37241 * 21 20 7
41 41 H 1.09003 * 109.48239 * 182.40287 * 21 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0399 -0.7212 1.2494
5 1 1.6772 -1.7490 1.2495
6 6 3.5708 -0.7208 1.2500
7 6 4.0733 -1.3910 2.5325
8 1 3.7523 -2.4324 2.5511
9 6 5.6012 -1.3254 2.5794
10 7 6.0871 -2.0628 3.7534
11 6 7.5535 -2.0218 3.8309
12 6 8.0140 -2.7874 5.0445
13 1 7.2897 -3.2578 5.6930
14 6 9.3598 -2.8875 5.3268
15 7 10.2418 -2.3151 4.5367
16 14 9.9305 -3.8359 6.8315
17 1 8.7506 -4.3798 7.5507
18 1 10.8111 -4.9539 6.4073
19 1 10.6836 -2.9274 7.7330
20 6 3.4914 -0.6536 3.7424
21 6 1.9636 -0.6565 3.6456
22 8 1.5644 -0.0471 2.4162
23 1 -0.3633 0.5139 0.8898
24 1 -0.3633 0.5138 -0.8901
25 1 -0.3634 -1.0276 0.0005
26 1 1.8934 -0.5139 -0.8898
27 1 3.1300 1.4425 0.0005
28 1 1.6767 1.9563 -0.8901
29 1 1.6767 1.9564 0.8899
30 1 3.9349 0.3057 1.2087
31 1 3.9355 -1.2727 0.3836
32 1 5.9183 -0.2848 2.6471
33 1 6.0120 -1.7722 1.6740
34 1 5.6698 -1.7086 4.6010
35 1 7.9775 -2.4738 2.9341
36 1 7.8846 -0.9861 3.9071
37 1 11.1886 -2.3858 4.7351
38 1 3.7992 -1.1575 4.6586
39 1 3.8547 0.3739 3.7521
40 1 1.5992 -1.6834 3.6774
41 1 1.5453 -0.0963 4.4818
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308850176.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:39:38
Heat of formation + Delta-G solvation = -97.922910 kcal
Electronic energy + Delta-G solvation = -17808.205285 eV
Core-core repulsion = 15106.852203 eV
Total energy + Delta-G solvation = -2701.353082 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.79045 -37.69188 -36.05209 -35.22935 -33.65156 -31.00490 -29.40884 -27.98944
-26.89110 -24.65153 -23.99825 -23.10738 -20.96171 -20.67541 -18.59952 -17.22944
-16.96745 -16.66488 -16.49967 -15.83989 -15.54108 -15.15265 -14.88871 -14.69091
-14.39577 -14.06508 -13.86222 -13.46161 -13.17282 -12.87248 -12.79303 -12.67143
-12.56006 -12.46693 -12.36963 -12.01943 -11.81555 -11.70397 -11.51316 -11.38998
-11.23030 -10.96045 -10.69209 -10.30103 -9.16117 -8.24859 -6.36692 1.40402
1.41170 1.55350 2.38697 2.90334 3.08391 3.42182 3.75021 3.87368
3.94766 3.98278 4.15094 4.19117 4.32876 4.44296 4.49617 4.56325
4.70229 4.74907 4.80158 4.87120 4.89865 4.93503 4.98851 5.05206
5.08911 5.11818 5.14231 5.22430 5.23792 5.28627 5.40641 5.51440
5.57510 5.60496 5.99261 6.36852 6.41264 6.69636 6.86461 7.34654
8.87194
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.054138 B = 0.003973 C = 0.003814
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 517.068304 B = 7045.959876 C = 7340.154976
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.088 4.088
3 C -0.144 4.144
4 C 0.097 3.903
5 H 0.060 0.940
6 C -0.141 4.141
7 C -0.077 4.077
8 H 0.074 0.926
9 C 0.067 3.933
10 N -0.687 5.687
11 C 0.206 3.794
12 C -0.536 4.536
13 H 0.066 0.934
14 C -0.001 4.001
15 N -0.935 5.935
16 Si 0.976 3.024
17 H -0.261 1.261
18 H -0.278 1.278
19 H -0.277 1.277
20 C -0.150 4.150
21 C 0.067 3.933
22 O -0.386 6.386
23 H 0.051 0.949
24 H 0.063 0.937
25 H 0.055 0.945
26 H 0.091 0.909
27 H 0.051 0.949
28 H 0.063 0.937
29 H 0.050 0.950
30 H 0.068 0.932
31 H 0.078 0.922
32 H 0.011 0.989
33 H 0.056 0.944
34 H 0.335 0.665
35 H -0.002 1.002
36 H -0.042 1.042
37 H 0.266 0.734
38 H 0.073 0.927
39 H 0.059 0.941
40 H 0.056 0.944
41 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.302 4.806 -7.094 21.118
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.106 4.106
3 C -0.201 4.201
4 C 0.039 3.961
5 H 0.078 0.922
6 C -0.179 4.179
7 C -0.096 4.096
8 H 0.093 0.907
9 C -0.062 4.062
10 N -0.318 5.318
11 C 0.078 3.922
12 C -0.574 4.574
13 H 0.084 0.916
14 C -0.199 4.199
15 N -0.575 5.575
16 Si 0.800 3.200
17 H -0.185 1.185
18 H -0.203 1.203
19 H -0.202 1.202
20 C -0.188 4.188
21 C -0.010 4.010
22 O -0.305 6.305
23 H 0.070 0.930
24 H 0.082 0.918
25 H 0.074 0.926
26 H 0.109 0.891
27 H 0.070 0.930
28 H 0.082 0.918
29 H 0.069 0.931
30 H 0.087 0.913
31 H 0.097 0.903
32 H 0.029 0.971
33 H 0.074 0.926
34 H 0.153 0.847
35 H 0.017 0.983
36 H -0.024 1.024
37 H 0.074 0.926
38 H 0.091 0.909
39 H 0.077 0.923
40 H 0.074 0.926
41 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -19.250 4.391 -7.451 21.103
hybrid contribution 1.345 0.349 0.910 1.661
sum -17.905 4.740 -6.541 19.643
Atomic orbital electron populations
1.21730 0.94121 1.01883 1.01986 1.21198 0.96905 0.96859 0.95635
1.21799 1.00716 0.95773 1.01810 1.22172 0.92007 0.95745 0.86169
0.92221 1.22269 0.96607 1.01554 0.97459 1.21124 0.92934 1.00015
0.95542 0.90742 1.21959 0.95453 0.94648 0.94188 1.60581 1.07764
1.57989 1.05483 1.19220 0.83958 0.92948 0.96032 1.21577 0.92477
1.33367 1.10011 0.91621 1.26005 0.96765 0.96703 1.00412 1.70103
1.02040 1.45602 1.39784 0.85233 0.78357 0.78068 0.78316 1.18510
1.20320 1.20239 1.22218 0.97321 1.00561 0.98653 1.22578 0.92853
0.98634 0.86905 1.87871 1.74578 1.54268 1.13824 0.92956 0.91771
0.92567 0.89059 0.93044 0.91836 0.93103 0.91292 0.90319 0.97075
0.92594 0.84734 0.98339 1.02405 0.92563 0.90885 0.92265 0.92568
0.87654
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.19 9.05 71.98 0.65 -1.54 16
2 C -0.09 -1.52 2.81 -10.79 -0.03 -1.55 16
3 C -0.14 -2.60 8.70 71.98 0.63 -1.97 16
4 C 0.10 2.01 2.38 30.63 0.07 2.09 16
5 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
6 C -0.14 -3.31 4.41 30.68 0.14 -3.17 16
7 C -0.08 -2.17 2.49 -10.67 -0.03 -2.19 16
8 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
9 C 0.07 2.45 5.15 86.31 0.44 2.90 16
10 N -0.69 -30.35 6.49 -517.91 -3.36 -33.71 16
11 C 0.21 11.42 5.44 85.56 0.47 11.88 16
12 C -0.54 -31.17 9.32 25.60 0.24 -30.93 16
13 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16
14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16
15 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16
16 Si 0.98 44.60 29.54 68.60 2.03 46.63 16
17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16
18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16
19 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16
20 C -0.15 -3.85 5.11 30.68 0.16 -3.69 16
21 C 0.07 1.44 6.84 72.01 0.49 1.93 16
22 O -0.39 -8.93 9.06 -148.98 -1.35 -10.27 16
23 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16
24 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16
25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16
26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16
27 H 0.05 0.98 6.38 -2.39 -0.02 0.96 16
28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
29 H 0.05 1.04 7.68 -2.39 -0.02 1.02 16
30 H 0.07 1.70 6.31 -2.39 -0.02 1.68 16
31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16
32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16
33 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16
34 H 0.33 13.92 7.06 -89.70 -0.63 13.28 16
35 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16
36 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16
37 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16
38 H 0.07 1.95 6.84 -2.38 -0.02 1.93 16
39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
40 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
41 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16
Total: -1.00 -64.43 318.91 1.63 -62.80
By element:
Atomic # 1 Polarization: 17.10 SS G_CDS: 0.34 Total: 17.44 kcal
Atomic # 6 Polarization: -29.53 SS G_CDS: 3.69 Total: -25.84 kcal
Atomic # 7 Polarization: -87.67 SS G_CDS: -3.08 Total: -90.74 kcal
Atomic # 8 Polarization: -8.93 SS G_CDS: -1.35 Total: -10.27 kcal
Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal
Total: -64.43 1.63 -62.80 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308850176.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.128 kcal
(2) G-P(sol) polarization free energy of solvation -64.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.923 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds