Wall clock time and date at job start Mon Mar 30 2020 04:39:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53005 * 109.46783 * 2 1
4 4 C 1.52994 * 109.47131 * 119.99917 * 2 1 3
5 5 H 1.08999 * 109.48336 * 59.97936 * 4 2 1
6 6 C 1.53098 * 109.47761 * 180.02562 * 4 2 1
7 7 C 1.53177 * 109.21356 * 177.56950 * 6 4 2
8 8 H 1.09005 * 109.54560 * 183.18386 * 7 6 4
9 9 C 1.52998 * 109.54283 * 62.91948 * 7 6 4
10 10 N 1.46898 * 109.47219 * 174.99982 * 9 7 6
11 11 C 1.46904 * 111.00043 * 179.97438 * 10 9 7
12 12 C 1.50701 * 109.47370 * 179.97438 * 11 10 9
13 13 H 1.08009 * 119.99525 * 0.02562 * 12 11 10
14 14 C 1.37876 * 120.00518 * 179.97438 * 12 11 10
15 15 N 1.31506 * 120.00264 * 180.02562 * 14 12 11
16 16 Si 1.86800 * 119.99600 * 0.02562 * 14 12 11
17 17 H 1.48499 * 109.47264 * 89.99987 * 16 14 12
18 18 H 1.48502 * 109.46830 * 209.99792 * 16 14 12
19 19 H 1.48504 * 109.47109 * 329.99788 * 16 14 12
20 20 C 1.53180 * 109.03525 * 303.11207 * 7 6 4
21 21 C 1.53097 * 109.21119 * 56.88485 * 20 7 6
22 22 O 1.42898 * 109.41405 * 302.42599 * 21 20 7
23 23 H 1.09004 * 109.47267 * 60.00345 * 1 2 3
24 24 H 1.09005 * 109.47074 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47449 * 299.99813 * 1 2 3
26 26 H 1.08998 * 109.46993 * 240.00464 * 2 1 3
27 27 H 1.09000 * 109.46963 * 180.02562 * 3 2 1
28 28 H 1.09004 * 109.46937 * 299.99857 * 3 2 1
29 29 H 1.08998 * 109.47500 * 59.99896 * 3 2 1
30 30 H 1.09002 * 109.52244 * 297.50889 * 6 4 2
31 31 H 1.09004 * 109.52508 * 57.63418 * 6 4 2
32 32 H 1.09003 * 109.47044 * 295.00107 * 9 7 6
33 33 H 1.09001 * 109.47594 * 54.99798 * 9 7 6
34 34 H 1.00902 * 111.00142 * 303.94853 * 10 9 7
35 35 H 1.08996 * 109.47375 * 300.00095 * 11 10 9
36 36 H 1.09003 * 109.46877 * 60.00405 * 11 10 9
37 37 H 0.97000 * 120.00092 * 180.02562 * 15 14 12
38 38 H 1.08992 * 109.47198 * 296.98281 * 20 7 6
39 39 H 1.09003 * 109.52778 * 176.82145 * 20 7 6
40 40 H 1.09007 * 109.47760 * 182.43925 * 21 20 7
41 41 H 1.08997 * 109.48022 * 62.41203 * 21 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7212 1.2492
5 1 1.6765 -1.7488 1.2496
6 6 3.5710 -0.7207 1.2497
7 6 4.0749 -1.3902 2.5319
8 1 5.1634 -1.3425 2.5647
9 6 3.6239 -2.8520 2.5573
10 7 4.2071 -3.5241 3.7261
11 6 3.7943 -4.9328 3.7837
12 6 4.4111 -5.5880 4.9926
13 1 5.0459 -5.0151 5.6524
14 6 4.1642 -6.9185 5.2569
15 7 4.7020 -7.4901 6.3120
16 14 3.0658 -7.9091 4.1160
17 1 3.8917 -8.5307 3.0499
18 1 2.3771 -8.9720 4.8916
19 1 2.0552 -7.0123 3.4998
20 6 3.4917 -0.6542 3.7422
21 6 1.9638 -0.6572 3.6454
22 8 1.5645 -0.0475 2.4163
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 1.8933 -0.5138 -0.8900
27 1 3.1299 1.4426 -0.0005
28 1 1.6766 1.9564 -0.8900
29 1 1.6766 1.9564 0.8899
30 1 3.9357 -1.2724 0.3832
31 1 3.9350 0.3059 1.2075
32 1 2.5365 -2.8957 2.6181
33 1 3.9573 -3.3510 1.6474
34 1 5.2127 -3.4414 3.7265
35 1 2.7081 -4.9906 3.8532
36 1 4.1287 -5.4464 2.8823
37 1 4.5286 -8.4263 6.4978
38 1 3.8540 0.3737 3.7515
39 1 3.7996 -1.1583 4.6583
40 1 1.5455 -0.0972 4.4818
41 1 1.5996 -1.6841 3.6770
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308850179.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:39:43
Heat of formation + Delta-G solvation = -90.771429 kcal
Electronic energy + Delta-G solvation = -18198.260999 eV
Core-core repulsion = 15497.218029 eV
Total energy + Delta-G solvation = -2701.042970 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.98361 -37.54383 -36.03297 -35.13922 -33.82243 -30.95487 -29.72688 -28.00119
-26.47913 -24.87442 -24.48465 -23.03997 -21.12192 -19.91312 -18.82564 -17.37519
-16.98642 -16.61500 -16.28602 -15.90677 -15.55641 -15.30671 -14.89833 -14.71739
-14.52356 -14.09081 -13.92143 -13.62883 -13.22166 -12.95396 -12.83642 -12.66110
-12.50187 -12.35769 -12.30693 -11.90178 -11.78662 -11.68864 -11.57323 -11.39509
-11.30824 -10.90331 -10.83766 -10.15583 -9.15329 -8.32297 -6.36770 1.32011
1.34344 1.45326 2.31657 2.91568 3.01679 3.43207 3.69389 3.91060
3.94397 4.01552 4.16097 4.22730 4.34841 4.43599 4.46349 4.60581
4.66046 4.72414 4.78976 4.81072 4.85582 4.90460 4.99859 5.03239
5.06582 5.11558 5.19167 5.23407 5.25770 5.33731 5.36128 5.49402
5.50589 5.58959 5.93738 6.38551 6.53522 6.64054 6.74956 7.28479
8.84463
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.035667 B = 0.005041 C = 0.004763
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 784.853215 B = 5553.407730 C = 5876.870734
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.087 4.087
3 C -0.141 4.141
4 C 0.089 3.911
5 H 0.044 0.956
6 C -0.138 4.138
7 C -0.083 4.083
8 H 0.076 0.924
9 C 0.060 3.940
10 N -0.683 5.683
11 C 0.176 3.824
12 C -0.528 4.528
13 H 0.039 0.961
14 C 0.009 3.991
15 N -0.946 5.946
16 Si 0.950 3.050
17 H -0.265 1.265
18 H -0.280 1.280
19 H -0.253 1.253
20 C -0.136 4.136
21 C 0.062 3.938
22 O -0.384 6.384
23 H 0.066 0.934
24 H 0.047 0.953
25 H 0.050 0.950
26 H 0.091 0.909
27 H 0.060 0.940
28 H 0.063 0.937
29 H 0.050 0.950
30 H 0.080 0.920
31 H 0.085 0.915
32 H 0.060 0.940
33 H 0.024 0.976
34 H 0.336 0.664
35 H 0.021 0.979
36 H -0.017 1.017
37 H 0.268 0.732
38 H 0.073 0.927
39 H 0.069 0.931
40 H 0.099 0.901
41 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.285 16.593 -14.966 23.213
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.105 4.105
3 C -0.198 4.198
4 C 0.032 3.968
5 H 0.062 0.938
6 C -0.176 4.176
7 C -0.102 4.102
8 H 0.094 0.906
9 C -0.070 4.070
10 N -0.313 5.313
11 C 0.047 3.953
12 C -0.566 4.566
13 H 0.057 0.943
14 C -0.189 4.189
15 N -0.587 5.587
16 Si 0.773 3.227
17 H -0.190 1.190
18 H -0.205 1.205
19 H -0.177 1.177
20 C -0.174 4.174
21 C -0.014 4.014
22 O -0.303 6.303
23 H 0.085 0.915
24 H 0.066 0.934
25 H 0.069 0.931
26 H 0.110 0.890
27 H 0.079 0.921
28 H 0.082 0.918
29 H 0.069 0.931
30 H 0.099 0.901
31 H 0.104 0.896
32 H 0.078 0.922
33 H 0.042 0.958
34 H 0.154 0.846
35 H 0.039 0.961
36 H 0.001 0.999
37 H 0.077 0.923
38 H 0.092 0.908
39 H 0.088 0.912
40 H 0.117 0.883
41 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -6.891 16.813 -14.450 23.216
hybrid contribution 0.499 -1.592 -0.404 1.716
sum -6.392 15.222 -14.854 22.208
Atomic orbital electron populations
1.21756 0.94774 1.01490 1.02018 1.21197 0.96503 0.97378 0.95466
1.21783 1.01123 0.95067 1.01824 1.22222 0.93235 0.95150 0.86220
0.93779 1.22245 0.95905 1.02092 0.97323 1.21164 1.00521 0.92938
0.95551 0.90585 1.22140 0.99416 0.94418 0.90993 1.60360 1.14669
1.14708 1.41585 1.19728 0.95609 0.86012 0.93970 1.21334 1.29966
0.95477 1.09818 0.94302 1.25860 0.97246 0.98881 0.96867 1.70044
1.46399 1.13111 1.29126 0.85676 0.79571 0.78479 0.78941 1.19037
1.20502 1.17727 1.21992 0.96023 1.00423 0.98927 1.22548 0.94646
0.97521 0.86721 1.87849 1.74982 1.53820 1.13689 0.91482 0.93351
0.93078 0.89046 0.92144 0.91845 0.93121 0.90137 0.89605 0.92186
0.95815 0.84640 0.96128 0.99911 0.92308 0.90831 0.91198 0.88284
0.94465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.55 9.05 71.98 0.65 -1.90 16
2 C -0.09 -1.55 2.81 -10.79 -0.03 -1.58 16
3 C -0.14 -2.28 8.70 71.98 0.63 -1.66 16
4 C 0.09 1.99 2.10 30.63 0.06 2.06 16
5 H 0.04 1.10 6.73 -2.39 -0.02 1.09 16
6 C -0.14 -2.87 4.62 30.69 0.14 -2.73 16
7 C -0.08 -2.13 2.84 -10.67 -0.03 -2.16 16
8 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16
9 C 0.06 1.90 4.51 86.30 0.39 2.29 16
10 N -0.68 -27.58 5.92 -517.92 -3.07 -30.65 16
11 C 0.18 8.48 4.51 85.56 0.39 8.86 16
12 C -0.53 -30.86 9.87 25.60 0.25 -30.61 16
13 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16
14 C 0.01 0.54 5.47 84.66 0.46 1.00 16
15 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16
16 Si 0.95 44.42 27.47 68.60 1.88 46.31 16
17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16
18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16
19 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16
20 C -0.14 -3.57 5.55 30.69 0.17 -3.40 16
21 C 0.06 1.64 6.57 72.01 0.47 2.11 16
22 O -0.38 -9.79 9.06 -148.98 -1.35 -11.14 16
23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
24 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16
25 H 0.05 1.04 7.68 -2.39 -0.02 1.02 16
26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
27 H 0.06 0.91 6.38 -2.39 -0.02 0.90 16
28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
29 H 0.05 0.96 7.68 -2.39 -0.02 0.94 16
30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
31 H 0.09 1.63 6.31 -2.38 -0.02 1.62 16
32 H 0.06 2.00 5.03 -2.39 -0.01 1.98 16
33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16
34 H 0.34 13.30 8.72 -89.69 -0.78 12.51 16
35 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16
36 H -0.02 -0.79 7.57 -2.39 -0.02 -0.81 16
37 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16
38 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
39 H 0.07 2.13 7.70 -2.39 -0.02 2.11 16
40 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16
41 H 0.04 1.12 6.49 -2.39 -0.02 1.10 16
Total: -1.00 -64.59 310.91 1.47 -63.11
By element:
Atomic # 1 Polarization: 19.09 SS G_CDS: 0.15 Total: 19.24 kcal
Atomic # 6 Polarization: -31.26 SS G_CDS: 3.56 Total: -27.70 kcal
Atomic # 7 Polarization: -87.05 SS G_CDS: -2.77 Total: -89.82 kcal
Atomic # 8 Polarization: -9.79 SS G_CDS: -1.35 Total: -11.14 kcal
Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal
Total: -64.59 1.47 -63.11 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308850179.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.657 kcal
(2) G-P(sol) polarization free energy of solvation -64.587 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds