Wall clock time and date at job start Mon Mar 30 2020 03:26:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52997 * 109.46686 * 2 1
4 4 O 1.42898 * 109.47524 * 299.99914 * 3 2 1
5 5 C 1.53004 * 109.46960 * 180.02562 * 3 2 1
6 6 C 1.52999 * 109.47450 * 180.02562 * 5 3 2
7 7 C 1.52998 * 109.47012 * 59.99627 * 6 5 3
8 8 N 1.46899 * 109.47307 * 60.00291 * 7 6 5
9 9 C 1.46892 * 111.00160 * 157.23910 * 8 7 6
10 10 H 1.08998 * 109.47400 * 357.12099 * 9 8 7
11 11 C 1.53005 * 109.47152 * 117.12172 * 9 8 7
12 12 C 1.50705 * 109.47492 * 237.12177 * 9 8 7
13 13 H 1.07995 * 119.99643 * 357.34578 * 12 9 8
14 14 C 1.37878 * 120.00300 * 177.35091 * 12 9 8
15 15 N 1.31521 * 119.99470 * 351.99613 * 14 12 9
16 16 Si 1.86790 * 120.00127 * 172.27586 * 14 12 9
17 17 H 1.48500 * 109.47223 * 264.78382 * 16 14 12
18 18 H 1.48506 * 109.47464 * 24.78697 * 16 14 12
19 19 H 1.48501 * 109.47181 * 144.78232 * 16 14 12
20 20 C 1.53000 * 109.47274 * 300.00090 * 7 6 5
21 21 C 1.52994 * 109.47027 * 60.00322 * 20 7 6
22 22 H 1.08996 * 109.47391 * 60.00212 * 1 2 3
23 23 H 1.09007 * 109.47140 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47112 * 299.99860 * 1 2 3
25 25 H 1.09001 * 109.47112 * 240.00140 * 2 1 3
26 26 H 1.08989 * 109.47219 * 120.00160 * 2 1 3
27 27 H 0.96698 * 113.99887 * 60.00024 * 4 3 2
28 28 H 1.09001 * 109.47156 * 59.99945 * 5 3 2
29 29 H 1.09003 * 109.46732 * 299.99959 * 5 3 2
30 30 H 1.09006 * 109.47069 * 300.00133 * 6 5 3
31 31 H 1.08997 * 109.47346 * 179.97438 * 6 5 3
32 32 H 1.09002 * 109.46781 * 180.02562 * 7 6 5
33 33 H 1.00900 * 111.00155 * 281.19897 * 8 7 6
34 34 H 1.08998 * 109.47108 * 183.05174 * 11 9 8
35 35 H 1.08996 * 109.46650 * 303.04981 * 11 9 8
36 36 H 1.09000 * 109.46888 * 63.04530 * 11 9 8
37 37 H 0.97002 * 119.99024 * 180.28176 * 15 14 12
38 38 H 1.09001 * 109.47112 * 180.02562 * 20 7 6
39 39 H 1.08996 * 109.47391 * 300.00428 * 20 7 6
40 40 H 1.09002 * 109.47365 * 180.02562 * 21 20 7
41 41 H 1.08999 * 109.47788 * 59.99506 * 21 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 8 1.5636 2.1162 -1.1667
5 6 3.5699 1.4426 -0.0006
6 6 4.0799 2.8851 0.0000
7 6 3.5704 3.6056 1.2498
8 7 4.0605 2.9124 2.4487
9 6 4.0735 3.8130 3.6091
10 1 3.7616 4.8102 3.2987
11 6 3.1100 3.2859 4.6745
12 6 5.4669 3.8774 4.1796
13 1 6.2537 3.2736 3.7523
14 6 5.7371 4.7070 5.2472
15 7 4.8250 5.5564 5.6672
16 14 7.4013 4.6300 6.0920
17 1 7.3161 3.7331 7.2725
18 1 8.4146 4.1037 5.1426
19 1 7.7962 5.9920 6.5326
20 6 2.0404 3.6056 1.2504
21 6 1.5304 2.1631 1.2499
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 -1.0277 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5138 0.8899
27 1 0.5996 2.1543 -1.2329
28 1 3.9329 0.9289 -0.8909
29 1 3.9336 0.9286 0.8892
30 1 3.7162 3.3995 -0.8896
31 1 5.1699 2.8851 0.0000
32 1 3.9334 4.6334 1.2500
33 1 3.5129 2.0864 2.6381
34 1 3.0787 3.9822 5.5125
35 1 2.1127 3.1882 4.2459
36 1 3.4524 2.3119 5.0240
37 1 5.0166 6.1428 6.4157
38 1 1.6774 4.1193 2.1406
39 1 1.6767 4.1198 0.3609
40 1 0.4404 2.1631 1.2498
41 1 1.8941 1.6487 2.1393
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308916078.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:19
Heat of formation + Delta-G solvation = -73.351732 kcal
Electronic energy + Delta-G solvation = -18776.342470 eV
Core-core repulsion = 16076.054874 eV
Total energy + Delta-G solvation = -2700.287595 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.82013 -36.54321 -33.86899 -32.82938 -31.49864 -30.39709 -28.80944 -26.58555
-25.02076 -23.63950 -22.20227 -20.49905 -20.33017 -18.69610 -16.33174 -16.24306
-15.68974 -14.87102 -14.60357 -14.43611 -13.87854 -13.58769 -13.34235 -12.88502
-12.61188 -12.44506 -12.28337 -11.79567 -11.74230 -11.49160 -11.25573 -11.04482
-10.95111 -10.86885 -10.73153 -10.63456 -10.37240 -10.26210 -9.86107 -9.69521
-9.61521 -9.40281 -8.99928 -8.29087 -7.11420 -5.92252 -3.91904 3.36486
3.43258 3.48164 4.35225 4.50907 4.73306 4.83127 4.96709 5.13112
5.28016 5.35279 5.39453 5.52641 5.62185 5.66032 5.76019 5.80748
5.86823 5.89399 5.98526 6.05474 6.13867 6.27973 6.34916 6.46544
6.57450 6.64178 6.69218 6.77257 6.85537 6.93014 7.07247 7.45962
7.66711 7.77224 7.99855 8.35054 8.60831 8.77161 9.16138 9.72001
11.15746
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.041508 B = 0.005703 C = 0.005544
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 674.403748 B = 4908.944513 C = 5049.302374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.151 4.151
3 C 0.136 3.864
4 O -0.555 6.555
5 C -0.100 4.100
6 C -0.100 4.100
7 C 0.091 3.909
8 N -0.678 5.678
9 C 0.209 3.791
10 H 0.025 0.975
11 C -0.154 4.154
12 C -0.489 4.489
13 H 0.062 0.938
14 C 0.053 3.947
15 N -0.900 5.900
16 Si 0.892 3.108
17 H -0.283 1.283
18 H -0.274 1.274
19 H -0.289 1.289
20 C -0.144 4.144
21 C -0.143 4.143
22 H 0.053 0.947
23 H 0.055 0.945
24 H 0.059 0.941
25 H 0.066 0.934
26 H 0.071 0.929
27 H 0.366 0.634
28 H 0.058 0.942
29 H 0.081 0.919
30 H 0.060 0.940
31 H 0.065 0.935
32 H 0.073 0.927
33 H 0.319 0.681
34 H 0.074 0.926
35 H 0.008 0.992
36 H 0.032 0.968
37 H 0.258 0.742
38 H 0.059 0.941
39 H 0.061 0.939
40 H 0.060 0.940
41 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.751 -8.446 -10.580 16.120
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.189 4.189
3 C 0.095 3.905
4 O -0.361 6.361
5 C -0.138 4.138
6 C -0.138 4.138
7 C -0.021 4.021
8 N -0.309 5.309
9 C 0.102 3.898
10 H 0.042 0.958
11 C -0.213 4.213
12 C -0.528 4.528
13 H 0.081 0.919
14 C -0.147 4.147
15 N -0.540 5.540
16 Si 0.721 3.279
17 H -0.210 1.210
18 H -0.199 1.199
19 H -0.216 1.216
20 C -0.183 4.183
21 C -0.181 4.181
22 H 0.072 0.928
23 H 0.074 0.926
24 H 0.078 0.922
25 H 0.085 0.915
26 H 0.090 0.910
27 H 0.213 0.787
28 H 0.077 0.923
29 H 0.100 0.900
30 H 0.079 0.921
31 H 0.083 0.917
32 H 0.092 0.908
33 H 0.137 0.863
34 H 0.093 0.907
35 H 0.027 0.973
36 H 0.051 0.949
37 H 0.067 0.933
38 H 0.078 0.922
39 H 0.080 0.920
40 H 0.078 0.922
41 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -7.444 -8.135 -10.690 15.358
hybrid contribution -0.808 0.009 1.025 1.305
sum -8.252 -8.126 -9.665 15.085
Atomic orbital electron populations
1.21853 0.96058 1.01866 1.01780 1.22209 0.96112 0.97762 1.02769
1.21238 0.95067 0.89474 0.84681 1.86561 1.25753 1.79606 1.44145
1.21464 0.91498 0.98703 1.02101 1.21434 1.00495 0.94713 0.97194
1.21570 0.90802 0.98068 0.91614 1.60869 1.56634 1.08854 1.04540
1.19217 0.94935 0.90631 0.85024 0.95765 1.22232 0.95655 1.00684
1.02684 1.21275 0.95000 1.23068 1.13410 0.91932 1.24977 0.96896
0.95246 0.97545 1.69961 1.34317 1.22355 1.27340 0.86574 0.84543
0.77014 0.79797 1.20981 1.19889 1.21558 1.22149 0.98886 0.95673
1.01627 1.22214 1.00013 0.97473 0.98372 0.92808 0.92636 0.92183
0.91479 0.90998 0.78726 0.92321 0.90032 0.92138 0.91665 0.90832
0.86251 0.90741 0.97342 0.94854 0.93264 0.92179 0.91984 0.92181
0.90986
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.39 9.25 37.16 0.34 -1.05 16
2 C -0.15 -1.58 5.20 -26.73 -0.14 -1.72 16
3 C 0.14 1.69 0.73 -90.62 -0.07 1.63 16
4 O -0.55 -6.94 11.59 -35.23 -0.41 -7.35 16
5 C -0.10 -1.42 4.70 -26.73 -0.13 -1.55 16
6 C -0.10 -1.62 5.49 -26.73 -0.15 -1.77 16
7 C 0.09 1.66 2.70 -67.71 -0.18 1.48 16
8 N -0.68 -14.15 5.72 -100.96 -0.58 -14.73 16
9 C 0.21 5.24 2.38 -68.86 -0.16 5.07 16
10 H 0.02 0.68 7.23 -51.93 -0.38 0.30 16
11 C -0.15 -3.63 8.78 37.16 0.33 -3.31 16
12 C -0.49 -13.70 8.80 -34.44 -0.30 -14.00 16
13 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16
14 C 0.05 1.51 5.23 -17.82 -0.09 1.41 16
15 N -0.90 -26.19 11.91 55.43 0.66 -25.53 16
16 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16
17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16
19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
20 C -0.14 -2.31 5.36 -26.73 -0.14 -2.45 16
21 C -0.14 -1.93 4.31 -26.73 -0.12 -2.04 16
22 H 0.05 0.42 6.78 -51.93 -0.35 0.07 16
23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
24 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16
25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
26 H 0.07 0.76 8.14 -51.94 -0.42 0.34 16
27 H 0.37 3.42 7.33 45.56 0.33 3.76 16
28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
29 H 0.08 1.21 7.15 -51.93 -0.37 0.84 16
30 H 0.06 0.96 7.68 -51.93 -0.40 0.56 16
31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
32 H 0.07 1.52 7.54 -51.93 -0.39 1.13 16
33 H 0.32 6.15 4.87 -39.29 -0.19 5.96 16
34 H 0.07 1.95 6.69 -51.93 -0.35 1.60 16
35 H 0.01 0.16 7.93 -51.93 -0.41 -0.25 16
36 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
38 H 0.06 1.06 7.77 -51.93 -0.40 0.66 16
39 H 0.06 0.94 7.68 -51.93 -0.40 0.55 16
40 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16
41 H 0.07 1.05 6.28 -51.93 -0.33 0.72 16
LS Contribution 305.79 15.07 4.61 4.61
Total: -1.00 -29.21 305.79 -7.93 -37.14
By element:
Atomic # 1 Polarization: 13.71 SS G_CDS: -6.38 Total: 7.33 kcal
Atomic # 6 Polarization: -17.49 SS G_CDS: -0.81 Total: -18.30 kcal
Atomic # 7 Polarization: -40.34 SS G_CDS: 0.08 Total: -40.26 kcal
Atomic # 8 Polarization: -6.94 SS G_CDS: -0.41 Total: -7.35 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal
Total LS contribution 4.61 Total: 4.61 kcal
Total: -29.21 -7.93 -37.14 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308916078.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.211 kcal
(2) G-P(sol) polarization free energy of solvation -29.210 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.420 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.352 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds