Wall clock time and date at job start Mon Mar 30 2020 03:26:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52997 * 109.46686 * 2 1
4 4 O 1.42898 * 109.47524 * 299.99914 * 3 2 1
5 5 C 1.53004 * 109.46960 * 180.02562 * 3 2 1
6 6 C 1.52999 * 109.47450 * 180.02562 * 5 3 2
7 7 C 1.52998 * 109.47012 * 59.99627 * 6 5 3
8 8 N 1.46899 * 109.47307 * 60.00291 * 7 6 5
9 9 C 1.46892 * 111.00160 * 157.23910 * 8 7 6
10 10 H 1.08998 * 109.47400 * 357.12099 * 9 8 7
11 11 C 1.53005 * 109.47152 * 117.12172 * 9 8 7
12 12 C 1.50705 * 109.47492 * 237.12177 * 9 8 7
13 13 H 1.07995 * 119.99643 * 357.34578 * 12 9 8
14 14 C 1.37878 * 120.00300 * 177.35091 * 12 9 8
15 15 N 1.31521 * 119.99470 * 351.99613 * 14 12 9
16 16 Si 1.86790 * 120.00127 * 172.27586 * 14 12 9
17 17 H 1.48500 * 109.47223 * 264.78382 * 16 14 12
18 18 H 1.48506 * 109.47464 * 24.78697 * 16 14 12
19 19 H 1.48501 * 109.47181 * 144.78232 * 16 14 12
20 20 C 1.53000 * 109.47274 * 300.00090 * 7 6 5
21 21 C 1.52994 * 109.47027 * 60.00322 * 20 7 6
22 22 H 1.08996 * 109.47391 * 60.00212 * 1 2 3
23 23 H 1.09007 * 109.47140 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47112 * 299.99860 * 1 2 3
25 25 H 1.09001 * 109.47112 * 240.00140 * 2 1 3
26 26 H 1.08989 * 109.47219 * 120.00160 * 2 1 3
27 27 H 0.96698 * 113.99887 * 60.00024 * 4 3 2
28 28 H 1.09001 * 109.47156 * 59.99945 * 5 3 2
29 29 H 1.09003 * 109.46732 * 299.99959 * 5 3 2
30 30 H 1.09006 * 109.47069 * 300.00133 * 6 5 3
31 31 H 1.08997 * 109.47346 * 179.97438 * 6 5 3
32 32 H 1.09002 * 109.46781 * 180.02562 * 7 6 5
33 33 H 1.00900 * 111.00155 * 281.19897 * 8 7 6
34 34 H 1.08998 * 109.47108 * 183.05174 * 11 9 8
35 35 H 1.08996 * 109.46650 * 303.04981 * 11 9 8
36 36 H 1.09000 * 109.46888 * 63.04530 * 11 9 8
37 37 H 0.97002 * 119.99024 * 180.28176 * 15 14 12
38 38 H 1.09001 * 109.47112 * 180.02562 * 20 7 6
39 39 H 1.08996 * 109.47391 * 300.00428 * 20 7 6
40 40 H 1.09002 * 109.47365 * 180.02562 * 21 20 7
41 41 H 1.08999 * 109.47788 * 59.99506 * 21 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 8 1.5636 2.1162 -1.1667
5 6 3.5699 1.4426 -0.0006
6 6 4.0799 2.8851 0.0000
7 6 3.5704 3.6056 1.2498
8 7 4.0605 2.9124 2.4487
9 6 4.0735 3.8130 3.6091
10 1 3.7616 4.8102 3.2987
11 6 3.1100 3.2859 4.6745
12 6 5.4669 3.8774 4.1796
13 1 6.2537 3.2736 3.7523
14 6 5.7371 4.7070 5.2472
15 7 4.8250 5.5564 5.6672
16 14 7.4013 4.6300 6.0920
17 1 7.3161 3.7331 7.2725
18 1 8.4146 4.1037 5.1426
19 1 7.7962 5.9920 6.5326
20 6 2.0404 3.6056 1.2504
21 6 1.5304 2.1631 1.2499
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 -1.0277 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5138 0.8899
27 1 0.5996 2.1543 -1.2329
28 1 3.9329 0.9289 -0.8909
29 1 3.9336 0.9286 0.8892
30 1 3.7162 3.3995 -0.8896
31 1 5.1699 2.8851 0.0000
32 1 3.9334 4.6334 1.2500
33 1 3.5129 2.0864 2.6381
34 1 3.0787 3.9822 5.5125
35 1 2.1127 3.1882 4.2459
36 1 3.4524 2.3119 5.0240
37 1 5.0166 6.1428 6.4157
38 1 1.6774 4.1193 2.1406
39 1 1.6767 4.1198 0.3609
40 1 0.4404 2.1631 1.2498
41 1 1.8941 1.6487 2.1393
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308916078.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:18
Heat of formation + Delta-G solvation = -92.897343 kcal
Electronic energy + Delta-G solvation = -18777.190031 eV
Core-core repulsion = 16076.054874 eV
Total energy + Delta-G solvation = -2701.135157 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.99949 -37.98658 -35.59334 -33.84652 -33.21930 -31.66783 -30.21627 -28.09738
-27.16461 -24.66822 -23.41021 -22.39439 -21.43320 -20.01188 -18.30019 -17.31738
-17.11991 -16.63844 -15.81533 -15.72148 -15.20131 -15.05939 -14.68667 -14.26811
-14.14182 -13.86220 -13.51478 -13.26425 -12.97121 -12.84072 -12.79336 -12.55634
-12.44105 -12.33823 -12.18815 -11.97725 -11.86940 -11.81661 -11.60997 -11.34811
-11.02842 -10.77925 -10.49009 -10.43080 -8.87885 -8.07233 -6.15857 1.41961
1.42772 1.54163 2.45762 3.19780 3.39777 3.64047 3.82701 3.83301
3.96834 4.24345 4.30362 4.35218 4.47406 4.53578 4.65126 4.68946
4.71745 4.75796 4.86575 4.89664 4.99600 5.06766 5.09801 5.16841
5.20863 5.23957 5.27662 5.34753 5.42803 5.46548 5.55534 5.61247
5.69070 5.82408 6.32383 6.70724 6.96961 6.97705 7.02322 7.53117
8.98321
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.041508 B = 0.005703 C = 0.005544
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 674.403748 B = 4908.944513 C = 5049.302374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C -0.146 4.146
3 C 0.143 3.857
4 O -0.565 6.565
5 C -0.100 4.100
6 C -0.093 4.093
7 C 0.089 3.911
8 N -0.678 5.678
9 C 0.216 3.784
10 H -0.012 1.012
11 C -0.140 4.140
12 C -0.509 4.509
13 H 0.051 0.949
14 C 0.007 3.993
15 N -0.926 5.926
16 Si 0.956 3.044
17 H -0.275 1.275
18 H -0.271 1.271
19 H -0.286 1.286
20 C -0.136 4.136
21 C -0.138 4.138
22 H 0.065 0.935
23 H 0.064 0.936
24 H 0.058 0.942
25 H 0.070 0.930
26 H 0.070 0.930
27 H 0.382 0.618
28 H 0.069 0.931
29 H 0.074 0.926
30 H 0.066 0.934
31 H 0.051 0.949
32 H 0.040 0.960
33 H 0.330 0.670
34 H 0.045 0.955
35 H 0.033 0.967
36 H 0.038 0.962
37 H 0.259 0.741
38 H 0.038 0.962
39 H 0.072 0.928
40 H 0.083 0.917
41 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.502 -9.988 -11.316 17.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.184 4.184
3 C 0.103 3.897
4 O -0.373 6.373
5 C -0.138 4.138
6 C -0.131 4.131
7 C -0.022 4.022
8 N -0.310 5.310
9 C 0.108 3.892
10 H 0.006 0.994
11 C -0.199 4.199
12 C -0.548 4.548
13 H 0.069 0.931
14 C -0.190 4.190
15 N -0.567 5.567
16 Si 0.782 3.218
17 H -0.201 1.201
18 H -0.196 1.196
19 H -0.212 1.212
20 C -0.175 4.175
21 C -0.176 4.176
22 H 0.084 0.916
23 H 0.083 0.917
24 H 0.077 0.923
25 H 0.089 0.911
26 H 0.089 0.911
27 H 0.231 0.769
28 H 0.088 0.912
29 H 0.093 0.907
30 H 0.085 0.915
31 H 0.069 0.931
32 H 0.058 0.942
33 H 0.150 0.850
34 H 0.064 0.936
35 H 0.052 0.948
36 H 0.057 0.943
37 H 0.068 0.932
38 H 0.057 0.943
39 H 0.091 0.909
40 H 0.102 0.898
41 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -8.215 -9.690 -11.442 17.097
hybrid contribution -0.588 0.530 1.188 1.427
sum -8.802 -9.160 -10.255 16.326
Atomic orbital electron populations
1.21849 0.94531 1.02728 1.02293 1.22145 0.97421 0.95893 1.02937
1.21077 0.93720 0.90751 0.84151 1.86526 1.27386 1.79684 1.43750
1.21455 0.93149 0.96832 1.02336 1.21328 0.99638 0.96178 0.95928
1.21557 0.92763 0.96355 0.91526 1.60737 1.57695 1.08717 1.03864
1.18960 0.93903 0.89766 0.86590 0.99396 1.22030 0.96770 0.99863
1.01232 1.21567 0.96158 1.23112 1.13962 0.93056 1.25719 1.00409
0.94814 0.98092 1.70078 1.36084 1.22834 1.27669 0.85580 0.80344
0.77125 0.78778 1.20080 1.19598 1.21178 1.22017 0.96700 0.97730
1.01085 1.22198 1.01407 0.95267 0.98680 0.91625 0.91695 0.92315
0.91109 0.91104 0.76905 0.91185 0.90719 0.91520 0.93061 0.94208
0.85008 0.93551 0.94789 0.94332 0.93175 0.94290 0.90932 0.89843
0.91904
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.20 9.25 71.98 0.67 -1.54 16
2 C -0.15 -2.63 5.20 30.59 0.16 -2.47 16
3 C 0.14 3.22 0.73 -10.79 -0.01 3.21 16
4 O -0.57 -12.45 11.59 -148.98 -1.73 -14.18 16
5 C -0.10 -2.69 4.70 30.60 0.14 -2.54 16
6 C -0.09 -2.97 5.49 30.59 0.17 -2.80 16
7 C 0.09 3.31 2.70 44.92 0.12 3.43 16
8 N -0.68 -28.69 5.72 -473.31 -2.71 -31.39 16
9 C 0.22 11.10 2.38 44.17 0.11 11.20 16
10 H -0.01 -0.69 7.23 -2.39 -0.02 -0.70 16
11 C -0.14 -6.66 8.78 71.98 0.63 -6.03 16
12 C -0.51 -29.10 8.80 25.60 0.23 -28.88 16
13 H 0.05 2.99 7.83 -2.91 -0.02 2.96 16
14 C 0.01 0.42 5.23 84.65 0.44 0.86 16
15 N -0.93 -54.88 11.91 21.45 0.26 -54.62 16
16 Si 0.96 45.12 29.54 68.60 2.03 47.15 16
17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
18 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16
19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
20 C -0.14 -4.29 5.36 30.59 0.16 -4.12 16
21 C -0.14 -3.43 4.31 30.59 0.13 -3.30 16
22 H 0.06 0.77 6.78 -2.39 -0.02 0.75 16
23 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16
24 H 0.06 0.85 6.43 -2.39 -0.02 0.83 16
25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
27 H 0.38 5.78 7.33 -74.06 -0.54 5.23 16
28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
29 H 0.07 2.11 7.15 -2.39 -0.02 2.09 16
30 H 0.07 2.05 7.68 -2.38 -0.02 2.03 16
31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
32 H 0.04 1.73 7.54 -2.39 -0.02 1.71 16
33 H 0.33 12.60 4.87 -89.69 -0.44 12.16 16
34 H 0.05 2.46 6.69 -2.39 -0.02 2.44 16
35 H 0.03 1.39 7.93 -2.39 -0.02 1.37 16
36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16
37 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16
38 H 0.04 1.38 7.77 -2.39 -0.02 1.36 16
39 H 0.07 2.13 7.68 -2.39 -0.02 2.11 16
40 H 0.08 1.72 6.43 -2.39 -0.02 1.71 16
41 H 0.06 1.70 6.28 -2.39 -0.02 1.69 16
Total: -1.00 -63.05 305.79 0.83 -62.23
By element:
Atomic # 1 Polarization: 23.76 SS G_CDS: 0.03 Total: 23.79 kcal
Atomic # 6 Polarization: -35.92 SS G_CDS: 2.95 Total: -32.96 kcal
Atomic # 7 Polarization: -83.56 SS G_CDS: -2.45 Total: -86.02 kcal
Atomic # 8 Polarization: -12.45 SS G_CDS: -1.73 Total: -14.18 kcal
Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal
Total: -63.05 0.83 -62.23 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308916078.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.669 kcal
(2) G-P(sol) polarization free energy of solvation -63.055 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.724 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.228 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds