Wall clock time and date at job start Mon Mar 30 2020 03:51:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52996 * 109.47527 * 2 1
4 4 C 1.53002 * 109.47095 * 120.00371 * 2 1 3
5 5 C 1.53000 * 109.47520 * 65.92080 * 4 2 1
6 6 H 1.09001 * 109.47070 * 305.29915 * 5 4 2
7 7 C 1.50693 * 109.47199 * 185.29686 * 5 4 2
8 8 H 1.08002 * 119.99654 * 245.20226 * 7 5 4
9 9 C 1.37879 * 120.00320 * 65.20356 * 7 5 4
10 10 N 1.31514 * 120.00134 * 192.31616 * 9 7 5
11 11 Si 1.86800 * 119.99886 * 12.31434 * 9 7 5
12 12 H 1.48497 * 109.47120 * 87.46786 * 11 9 7
13 13 H 1.48501 * 109.47037 * 207.47165 * 11 9 7
14 14 H 1.48505 * 109.46781 * 327.46838 * 11 9 7
15 15 N 1.46897 * 109.47084 * 65.29539 * 5 4 2
16 16 C 1.46899 * 111.00322 * 205.74495 * 15 5 4
17 17 H 1.09003 * 110.01309 * 324.82780 * 16 15 5
18 18 C 1.54262 * 110.07452 * 86.24044 * 16 15 5
19 19 C 1.55232 * 104.23245 * 142.92041 * 18 16 15
20 20 C 1.54887 * 102.58978 * 322.08535 * 19 18 16
21 21 C 1.53872 * 110.03310 * 203.43212 * 16 15 5
22 22 H 1.09010 * 110.02986 * 121.37888 * 21 16 15
23 23 O 1.42892 * 110.03357 * 359.95064 * 21 16 15
24 24 H 1.08998 * 109.47418 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47053 * 299.99809 * 1 2 3
26 26 H 1.08996 * 109.47344 * 59.99894 * 1 2 3
27 27 H 1.08999 * 109.47126 * 239.99647 * 2 1 3
28 28 H 1.09001 * 109.47750 * 180.02562 * 3 2 1
29 29 H 1.09004 * 109.47183 * 300.00501 * 3 2 1
30 30 H 1.09009 * 109.47091 * 59.99688 * 3 2 1
31 31 H 1.08997 * 109.46873 * 305.91432 * 4 2 1
32 32 H 1.09000 * 109.46943 * 185.92605 * 4 2 1
33 33 H 0.96994 * 119.99860 * 179.97438 * 10 9 7
34 34 H 1.00904 * 110.99869 * 329.69855 * 15 5 4
35 35 H 1.08997 * 110.48658 * 261.59838 * 18 16 15
36 36 H 1.09007 * 110.48794 * 24.11010 * 18 16 15
37 37 H 1.09004 * 110.89844 * 203.79173 * 19 18 16
38 38 H 1.09007 * 110.76643 * 80.31852 * 19 18 16
39 39 H 1.09000 * 110.48358 * 279.18823 * 20 19 18
40 40 H 1.08998 * 110.48913 * 156.67702 * 20 19 18
41 41 H 0.96708 * 114.00295 * 181.37354 * 23 21 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 1.6551 -2.2004 1.1770
6 1 0.5790 -2.2890 1.0279
7 6 2.0419 -2.8834 2.4634
8 1 2.8026 -3.6500 2.4601
9 6 1.4245 -2.5298 3.6445
10 7 1.9179 -2.9394 4.7927
11 14 -0.1126 -1.4688 3.6137
12 1 -1.3099 -2.3360 3.4739
13 1 -0.2060 -0.6959 4.8783
14 1 -0.0437 -0.5309 2.4643
15 7 2.3588 -2.8352 0.0547
16 6 1.6185 -4.0049 -0.4370
17 1 1.1320 -4.5150 0.3944
18 6 0.5665 -3.5670 -1.4767
19 6 0.5714 -4.7084 -2.5288
20 6 2.0719 -5.0833 -2.6130
21 6 2.5757 -4.9690 -1.1595
22 1 2.5538 -5.9471 -0.6787
23 8 3.9046 -4.4441 -1.1419
24 1 -0.3634 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 -0.3634 0.5138 -0.8899
27 1 1.8933 -0.5139 -0.8899
28 1 3.1301 1.4425 -0.0005
29 1 1.6767 1.9563 -0.8900
30 1 1.6767 1.9563 0.8900
31 1 1.5927 -0.2723 2.1360
32 1 3.1248 -0.6304 1.3038
33 1 1.4838 -2.6903 5.6235
34 1 2.5247 -2.1736 -0.6888
35 1 -0.4159 -3.4808 -1.0124
36 1 0.8546 -2.6213 -1.9360
37 1 0.2079 -4.3508 -3.4922
38 1 -0.0197 -5.5561 -2.1821
39 1 2.6042 -4.3837 -3.2574
40 1 2.1903 -6.1033 -2.9788
41 1 4.5521 -4.9969 -1.6007
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000309000608.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:51
Heat of formation + Delta-G solvation = -84.388087 kcal
Electronic energy + Delta-G solvation = -18936.605035 eV
Core-core repulsion = 16235.838867 eV
Total energy + Delta-G solvation = -2700.766168 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.17614 -38.31090 -35.88957 -34.98375 -33.87132 -30.54325 -28.47547 -27.98493
-27.17428 -26.56591 -22.44293 -21.75540 -20.83891 -20.59800 -18.69702 -18.18128
-17.01005 -16.58879 -15.92600 -15.65059 -15.46639 -15.02809 -14.84070 -14.41015
-14.19908 -13.77862 -13.64950 -13.28733 -13.10972 -12.93287 -12.77021 -12.41753
-12.32247 -12.28233 -11.92390 -11.90813 -11.81817 -11.66357 -11.52412 -11.22862
-10.96569 -10.83385 -10.58688 -10.51512 -8.71350 -8.23638 -6.21606 1.34381
1.36441 1.47109 2.38679 3.09026 3.37164 3.69806 3.75311 3.89002
4.06650 4.16237 4.20664 4.21695 4.42107 4.57375 4.59295 4.67940
4.76218 4.82048 4.84301 4.90769 4.97156 5.01661 5.03168 5.08101
5.13050 5.17134 5.20566 5.25212 5.36025 5.43271 5.44647 5.58553
5.61535 5.84289 6.20207 6.64416 6.85151 7.11143 7.22078 7.43127
8.93856
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.019068 B = 0.009552 C = 0.007893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1468.092508 B = 2930.770485 C = 3546.446226
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.097 4.097
3 C -0.140 4.140
4 C -0.116 4.116
5 C 0.203 3.797
6 H 0.000 1.000
7 C -0.498 4.498
8 H 0.019 0.981
9 C 0.007 3.993
10 N -0.954 5.954
11 Si 0.913 3.087
12 H -0.283 1.283
13 H -0.296 1.296
14 H -0.194 1.194
15 N -0.661 5.661
16 C 0.087 3.913
17 H 0.050 0.950
18 C -0.147 4.147
19 C -0.113 4.113
20 C -0.144 4.144
21 C 0.106 3.894
22 H 0.044 0.956
23 O -0.558 6.558
24 H 0.043 0.957
25 H 0.049 0.951
26 H 0.073 0.927
27 H 0.070 0.930
28 H 0.052 0.948
29 H 0.071 0.929
30 H 0.048 0.952
31 H 0.050 0.950
32 H 0.043 0.957
33 H 0.261 0.739
34 H 0.332 0.668
35 H 0.058 0.942
36 H 0.071 0.929
37 H 0.087 0.913
38 H 0.072 0.928
39 H 0.079 0.921
40 H 0.085 0.915
41 H 0.378 0.622
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.933 2.112 -17.956 18.502
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.115 4.115
3 C -0.197 4.197
4 C -0.154 4.154
5 C 0.094 3.906
6 H 0.018 0.982
7 C -0.537 4.537
8 H 0.038 0.962
9 C -0.189 4.189
10 N -0.595 5.595
11 Si 0.738 3.262
12 H -0.209 1.209
13 H -0.223 1.223
14 H -0.117 1.117
15 N -0.293 5.293
16 C -0.025 4.025
17 H 0.068 0.932
18 C -0.187 4.187
19 C -0.151 4.151
20 C -0.182 4.182
21 C 0.046 3.954
22 H 0.062 0.938
23 O -0.363 6.363
24 H 0.062 0.938
25 H 0.068 0.932
26 H 0.092 0.908
27 H 0.088 0.912
28 H 0.071 0.929
29 H 0.090 0.910
30 H 0.067 0.933
31 H 0.068 0.932
32 H 0.061 0.939
33 H 0.069 0.931
34 H 0.152 0.848
35 H 0.077 0.923
36 H 0.089 0.911
37 H 0.106 0.894
38 H 0.090 0.910
39 H 0.097 0.903
40 H 0.103 0.897
41 H 0.225 0.775
Dipole moment (debyes) X Y Z Total
from point charges -3.806 2.246 -17.025 17.589
hybrid contribution -0.829 -0.174 0.495 0.981
sum -4.635 2.072 -16.530 17.292
Atomic orbital electron populations
1.21964 0.95337 1.01293 1.01872 1.21181 0.95985 0.96774 0.97582
1.21789 1.00896 0.95089 1.01958 1.22112 0.99839 0.95942 0.97500
1.19295 0.91373 0.90801 0.89137 0.98249 1.21341 1.20051 1.20066
0.92216 0.96230 1.25835 1.00609 0.97723 0.94686 1.70132 1.41508
1.49632 0.98263 0.86519 0.79393 0.80640 0.79680 1.20919 1.22266
1.11662 1.60124 1.49375 1.09396 1.10364 1.22231 0.92143 0.92890
0.95204 0.93197 1.23157 0.98866 0.99633 0.97024 1.22402 0.96061
0.97639 0.98963 1.23048 0.96758 1.02748 0.95636 1.22493 0.83052
0.94718 0.95145 0.93833 1.86771 1.18000 1.51553 1.79938 0.93788
0.93229 0.90784 0.91220 0.92869 0.90978 0.93327 0.93196 0.93853
0.93054 0.84771 0.92297 0.91052 0.89449 0.90974 0.90254 0.89674
0.77528
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.31 8.25 71.98 0.59 -3.72 16
2 C -0.10 -3.04 2.83 -10.80 -0.03 -3.07 16
3 C -0.14 -3.70 9.19 71.98 0.66 -3.04 16
4 C -0.12 -4.85 3.70 30.59 0.11 -4.74 16
5 C 0.20 9.51 1.32 44.17 0.06 9.57 16
6 H 0.00 0.01 4.73 -2.39 -0.01 -0.01 16
7 C -0.50 -29.85 9.00 25.60 0.23 -29.62 16
8 H 0.02 1.35 8.06 -2.91 -0.02 1.33 16
9 C 0.01 0.45 5.37 84.66 0.45 0.90 16
10 N -0.95 -62.45 13.96 21.45 0.30 -62.15 16
11 Si 0.91 43.87 25.82 68.60 1.77 45.64 16
12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16
13 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16
14 H -0.19 -8.03 3.03 99.48 0.30 -7.73 16
15 N -0.66 -27.86 5.07 -469.63 -2.38 -30.24 16
16 C 0.09 3.19 3.01 45.64 0.14 3.33 16
17 H 0.05 2.20 7.71 -2.39 -0.02 2.18 16
18 C -0.15 -4.14 6.30 31.79 0.20 -3.94 16
19 C -0.11 -2.38 6.93 32.00 0.22 -2.16 16
20 C -0.14 -3.08 6.54 31.67 0.21 -2.87 16
21 C 0.11 3.25 4.26 31.32 0.13 3.39 16
22 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16
23 O -0.56 -18.30 12.28 -148.98 -1.83 -20.13 16
24 H 0.04 1.38 6.49 -2.39 -0.02 1.37 16
25 H 0.05 1.50 6.79 -2.39 -0.02 1.48 16
26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
27 H 0.07 2.08 6.29 -2.39 -0.02 2.07 16
28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16
29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
30 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16
31 H 0.05 2.21 4.62 -2.39 -0.01 2.20 16
32 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16
33 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16
34 H 0.33 12.54 5.83 -89.69 -0.52 12.02 16
35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
36 H 0.07 1.91 7.59 -2.38 -0.02 1.89 16
37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16
39 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16
40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
41 H 0.38 8.42 9.10 -74.05 -0.67 7.75 16
Total: -1.00 -72.97 306.09 0.25 -72.72
By element:
Atomic # 1 Polarization: 30.72 SS G_CDS: -0.59 Total: 30.12 kcal
Atomic # 6 Polarization: -38.95 SS G_CDS: 2.98 Total: -35.97 kcal
Atomic # 7 Polarization: -90.31 SS G_CDS: -2.08 Total: -92.39 kcal
Atomic # 8 Polarization: -18.30 SS G_CDS: -1.83 Total: -20.13 kcal
Atomic # 14 Polarization: 43.87 SS G_CDS: 1.77 Total: 45.64 kcal
Total: -72.97 0.25 -72.72 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309000608.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.666 kcal
(2) G-P(sol) polarization free energy of solvation -72.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.635 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.722 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds