Wall clock time and date at job start Mon Mar 30 2020 03:21:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52999 * 110.01574 * 2 1
4 4 O 1.42903 * 109.47256 * 59.30352 * 3 2 1
5 5 C 1.54267 * 110.03318 * 121.39382 * 2 1 3
6 6 C 1.54886 * 104.19791 * 142.94667 * 5 2 1
7 7 C 1.54896 * 102.74434 * 322.05564 * 6 5 2
8 8 C 1.53873 * 110.03494 * 238.61218 * 2 1 3
9 9 H 1.08993 * 110.03518 * 121.37631 * 8 2 1
10 10 N 1.46903 * 110.02843 * 359.95020 * 8 2 1
11 11 C 1.46900 * 111.00183 * 155.00468 * 10 8 2
12 12 C 1.52995 * 109.47361 * 179.97438 * 11 10 8
13 13 C 1.53004 * 109.47269 * 179.97438 * 12 11 10
14 14 C 1.50690 * 109.47238 * 180.02562 * 13 12 11
15 15 H 1.08000 * 120.00502 * 0.02562 * 14 13 12
16 16 C 1.37878 * 119.99890 * 180.02562 * 14 13 12
17 17 N 1.31521 * 119.99778 * 179.97438 * 16 14 13
18 18 Si 1.86802 * 120.00097 * 359.97438 * 16 14 13
19 19 H 1.48493 * 109.46911 * 89.99956 * 18 16 14
20 20 H 1.48498 * 109.47098 * 210.00030 * 18 16 14
21 21 H 1.48498 * 109.47100 * 330.00015 * 18 16 14
22 22 H 1.09001 * 109.46985 * 60.69732 * 1 2 3
23 23 H 1.09005 * 109.47165 * 180.70337 * 1 2 3
24 24 H 1.09001 * 109.47341 * 300.69862 * 1 2 3
25 25 H 1.08997 * 109.47286 * 299.29912 * 3 2 1
26 26 H 1.09008 * 109.47201 * 179.29693 * 3 2 1
27 27 H 0.96700 * 114.00311 * 180.02562 * 4 3 2
28 28 H 1.09007 * 110.48549 * 261.62298 * 5 2 1
29 29 H 1.09003 * 110.48573 * 24.12969 * 5 2 1
30 30 H 1.09001 * 110.76037 * 80.36843 * 6 5 2
31 31 H 1.09000 * 110.75548 * 203.74337 * 6 5 2
32 32 H 1.09004 * 110.48310 * 156.62596 * 7 6 5
33 33 H 1.08996 * 110.48550 * 279.26480 * 7 6 5
34 34 H 1.00909 * 110.99953 * 278.95536 * 10 8 2
35 35 H 1.09004 * 109.46849 * 299.99772 * 11 10 8
36 36 H 1.08998 * 109.47135 * 59.99582 * 11 10 8
37 37 H 1.08995 * 109.46924 * 299.99970 * 12 11 10
38 38 H 1.09002 * 109.46799 * 60.00056 * 12 11 10
39 39 H 1.09002 * 109.47131 * 300.00644 * 13 12 11
40 40 H 1.08998 * 109.46856 * 59.99972 * 13 12 11
41 41 H 0.96997 * 119.99636 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0537 1.4376 0.0000
4 8 1.5705 2.1206 1.1585
5 6 2.0585 -0.7550 1.2372
6 6 3.3144 -1.4994 0.7201
7 6 2.8891 -1.9398 -0.7027
8 6 2.0572 -0.7529 -1.2341
9 1 2.6860 -0.0942 -1.8329
10 7 0.9329 -1.2464 -2.0406
11 6 1.3295 -1.4238 -3.4439
12 6 0.1353 -1.9382 -4.2503
13 6 0.5483 -2.1223 -5.7120
14 6 -0.6280 -2.6283 -6.5063
15 1 -1.5756 -2.8009 -6.0178
16 6 -0.4946 -2.8710 -7.8570
17 7 -1.5212 -3.3131 -8.5502
18 14 1.1441 -2.5718 -8.7024
19 1 1.9606 -3.8110 -8.6517
20 1 0.9085 -2.1918 -10.1185
21 1 1.8658 -1.4747 -8.0090
22 1 -0.3633 0.5030 -0.8962
23 1 -0.3634 -1.0276 0.0126
24 1 -0.3634 0.5246 0.8836
25 1 1.7055 1.9511 -0.8962
26 1 3.1436 1.4273 0.0126
27 1 1.8635 3.0398 1.2240
28 1 2.3289 -0.0528 2.0258
29 1 1.3136 -1.4643 1.5981
30 1 4.1713 -0.8271 0.6763
31 1 3.5336 -2.3663 1.3434
32 1 3.7657 -2.1024 -1.3298
33 1 2.2794 -2.8421 -0.6564
34 1 0.5625 -2.1037 -1.6584
35 1 1.6593 -0.4683 -3.8518
36 1 2.1448 -2.1448 -3.5026
37 1 -0.1941 -2.8937 -3.8422
38 1 -0.6802 -1.2174 -4.1915
39 1 0.8776 -1.1666 -6.1197
40 1 1.3640 -2.8428 -5.7710
41 1 -1.4272 -3.4841 -9.5004
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309158354.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:37
Heat of formation + Delta-G solvation = -76.270158 kcal
Electronic energy + Delta-G solvation = -17785.031852 eV
Core-core repulsion = 15084.617704 eV
Total energy + Delta-G solvation = -2700.414148 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.77611 -36.63769 -35.22813 -33.07752 -31.56399 -31.17771 -27.82743 -26.61157
-25.64786 -23.75028 -22.04812 -20.91562 -20.15115 -18.47197 -17.41743 -16.70889
-15.92319 -15.67478 -14.85103 -14.57018 -14.16413 -14.01858 -13.77195 -13.41517
-12.94656 -12.72341 -12.46759 -11.99882 -11.92952 -11.81506 -11.49021 -11.13245
-10.97600 -10.83825 -10.77705 -10.75176 -10.57249 -10.36464 -10.00520 -9.92631
-9.71516 -9.52646 -9.14726 -8.51498 -8.13254 -6.01858 -3.99414 3.31445
3.38770 3.42649 3.94751 4.31744 4.47035 4.53948 4.71966 4.82430
5.10977 5.13442 5.25546 5.31847 5.33371 5.44309 5.47688 5.53016
5.66621 5.77521 5.80278 5.83311 5.89045 5.99345 6.05063 6.14514
6.20467 6.27720 6.39347 6.59009 6.59400 6.65644 6.94338 7.28119
7.39155 7.46566 7.47523 7.61505 7.83069 8.57726 9.03973 9.60885
11.11811
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.038639 B = 0.004223 C = 0.004126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 724.483098 B = 6628.152710 C = 6784.686432
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.055 4.055
3 C 0.089 3.911
4 O -0.570 6.570
5 C -0.113 4.113
6 C -0.124 4.124
7 C -0.153 4.153
8 C 0.091 3.909
9 H 0.077 0.923
10 N -0.678 5.678
11 C 0.056 3.944
12 C -0.099 4.099
13 C -0.013 4.013
14 C -0.518 4.518
15 H 0.072 0.928
16 C 0.065 3.935
17 N -0.905 5.905
18 Si 0.881 3.119
19 H -0.278 1.278
20 H -0.288 1.288
21 H -0.266 1.266
22 H 0.064 0.936
23 H 0.051 0.949
24 H 0.046 0.954
25 H 0.047 0.953
26 H 0.040 0.960
27 H 0.375 0.625
28 H 0.070 0.930
29 H 0.065 0.935
30 H 0.063 0.937
31 H 0.063 0.937
32 H 0.064 0.936
33 H 0.068 0.932
34 H 0.340 0.660
35 H 0.064 0.936
36 H 0.023 0.977
37 H 0.050 0.950
38 H 0.062 0.938
39 H 0.015 0.985
40 H 0.008 0.992
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.564 7.740 19.517 23.503
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.056 4.056
3 C 0.012 3.988
4 O -0.375 6.375
5 C -0.150 4.150
6 C -0.162 4.162
7 C -0.192 4.192
8 C -0.020 4.020
9 H 0.095 0.905
10 N -0.308 5.308
11 C -0.072 4.072
12 C -0.137 4.137
13 C -0.051 4.051
14 C -0.556 4.556
15 H 0.090 0.910
16 C -0.136 4.136
17 N -0.544 5.544
18 Si 0.708 3.292
19 H -0.204 1.204
20 H -0.214 1.214
21 H -0.191 1.191
22 H 0.083 0.917
23 H 0.070 0.930
24 H 0.065 0.935
25 H 0.065 0.935
26 H 0.058 0.942
27 H 0.221 0.779
28 H 0.089 0.911
29 H 0.084 0.916
30 H 0.082 0.918
31 H 0.082 0.918
32 H 0.083 0.917
33 H 0.087 0.913
34 H 0.159 0.841
35 H 0.083 0.917
36 H 0.041 0.959
37 H 0.069 0.931
38 H 0.080 0.920
39 H 0.033 0.967
40 H 0.026 0.974
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 9.943 7.731 19.310 23.054
hybrid contribution 1.731 -0.219 -0.770 1.907
sum 11.674 7.512 18.539 23.161
Atomic orbital electron populations
1.21479 0.92723 1.01481 1.01306 1.21181 0.97584 0.92501 0.94292
1.22234 0.96395 0.92779 0.87439 1.86472 1.76852 1.28691 1.45439
1.22442 0.96782 0.98654 0.97158 1.22446 0.97893 0.99760 0.96054
1.23138 1.00429 0.98775 0.96857 1.22176 0.90937 0.95340 0.93547
0.90485 1.60694 1.31365 1.36246 1.02506 1.22175 0.97905 0.99803
0.87358 1.21435 0.96232 0.99997 0.96052 1.19539 0.97118 0.96246
0.92163 1.21161 0.97564 1.43541 0.93362 0.91033 1.25046 0.96426
0.94659 0.97464 1.69924 1.30364 1.46174 1.07962 0.86765 0.84696
0.79059 0.78670 1.20392 1.21409 1.19077 0.91714 0.92976 0.93515
0.93455 0.94190 0.77917 0.91128 0.91591 0.91814 0.91779 0.91743
0.91311 0.84061 0.91710 0.95876 0.93107 0.91965 0.96695 0.97354
0.92796
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.37 7.22 37.16 0.27 -1.10 16
2 C -0.05 -0.60 0.75 -153.39 -0.12 -0.72 16
3 C 0.09 0.89 5.65 37.16 0.21 1.10 16
4 O -0.57 -5.52 12.26 -35.23 -0.43 -5.95 16
5 C -0.11 -1.14 5.81 -25.07 -0.15 -1.28 16
6 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16
7 C -0.15 -1.60 6.46 -25.01 -0.16 -1.76 16
8 C 0.09 1.06 2.87 -66.54 -0.19 0.87 16
9 H 0.08 0.92 7.34 -51.93 -0.38 0.54 16
10 N -0.68 -9.27 4.45 -105.49 -0.47 -9.74 16
11 C 0.06 0.90 5.52 -3.83 -0.02 0.88 16
12 C -0.10 -1.98 5.41 -26.73 -0.14 -2.12 16
13 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16
14 C -0.52 -15.06 9.66 -34.45 -0.33 -15.39 16
15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16
16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16
17 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16
18 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16
19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
21 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16
22 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16
23 H 0.05 0.63 7.46 -51.93 -0.39 0.24 16
24 H 0.05 0.57 7.68 -51.93 -0.40 0.17 16
25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
26 H 0.04 0.36 8.14 -51.92 -0.42 -0.07 16
27 H 0.37 1.98 9.12 45.56 0.42 2.40 16
28 H 0.07 0.73 7.32 -51.92 -0.38 0.35 16
29 H 0.07 0.67 7.84 -51.93 -0.41 0.27 16
30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.07 0.74 7.56 -51.93 -0.39 0.35 16
34 H 0.34 4.51 7.66 -39.29 -0.30 4.21 16
35 H 0.06 1.05 8.07 -51.93 -0.42 0.64 16
36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16
37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16
39 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16
40 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16
41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
LS Contribution 318.75 15.07 4.80 4.80
Total: -1.00 -31.42 318.75 -7.80 -39.22
By element:
Atomic # 1 Polarization: 8.11 SS G_CDS: -6.79 Total: 1.32 kcal
Atomic # 6 Polarization: -18.42 SS G_CDS: -1.02 Total: -19.43 kcal
Atomic # 7 Polarization: -37.61 SS G_CDS: 0.30 Total: -37.30 kcal
Atomic # 8 Polarization: -5.52 SS G_CDS: -0.43 Total: -5.95 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal
Total LS contribution 4.80 Total: 4.80 kcal
Total: -31.42 -7.80 -39.22 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309158354.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.052 kcal
(2) G-P(sol) polarization free energy of solvation -31.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.468 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.270 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds