Wall clock time and date at job start Mon Mar 30 2020 04:49:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47254 * 2 1
4 4 C 1.53002 * 109.47306 * 120.00305 * 2 1 3
5 5 H 1.08999 * 109.46906 * 60.00081 * 4 2 1
6 6 O 1.42898 * 109.46823 * 300.00073 * 4 2 1
7 7 C 1.53003 * 109.47253 * 179.97438 * 4 2 1
8 8 N 1.46892 * 109.47103 * 184.92058 * 7 4 2
9 9 C 1.46900 * 111.00368 * 162.43962 * 8 7 4
10 10 C 1.50693 * 109.47459 * 195.79510 * 9 8 7
11 11 H 1.07997 * 119.99923 * 5.10557 * 10 9 8
12 12 C 1.37882 * 119.99902 * 185.10792 * 10 9 8
13 13 N 1.31513 * 119.99913 * 180.02562 * 12 10 9
14 14 Si 1.86795 * 120.00092 * 0.02562 * 12 10 9
15 15 H 1.48500 * 109.47063 * 90.00178 * 14 12 10
16 16 H 1.48497 * 109.47246 * 210.00069 * 14 12 10
17 17 H 1.48501 * 109.47194 * 330.00216 * 14 12 10
18 18 C 1.46908 * 110.99958 * 286.39141 * 8 7 4
19 19 C 1.52994 * 109.47091 * 300.49857 * 18 8 7
20 20 C 1.52998 * 117.49737 * 244.15974 * 19 18 8
21 21 C 1.53007 * 117.49624 * 175.50286 * 19 18 8
22 22 H 1.09004 * 109.46566 * 299.99975 * 1 2 3
23 23 H 1.09004 * 109.47062 * 59.99815 * 1 2 3
24 24 H 1.08993 * 109.47384 * 179.97438 * 1 2 3
25 25 H 1.09006 * 109.47021 * 240.00296 * 2 1 3
26 26 H 1.08994 * 109.47246 * 300.00065 * 3 2 1
27 27 H 1.08995 * 109.47178 * 60.00608 * 3 2 1
28 28 H 1.09008 * 109.47296 * 179.97438 * 3 2 1
29 29 H 0.96701 * 113.99838 * 299.99106 * 6 4 2
30 30 H 1.09003 * 109.47014 * 304.91972 * 7 4 2
31 31 H 1.08998 * 109.46568 * 64.91781 * 7 4 2
32 32 H 1.08998 * 109.46873 * 315.80217 * 9 8 7
33 33 H 1.09003 * 109.46771 * 75.79553 * 9 8 7
34 34 H 0.96996 * 120.00146 * 179.97438 * 13 12 10
35 35 H 1.09001 * 109.46908 * 60.49782 * 18 8 7
36 36 H 1.08998 * 109.47324 * 180.49242 * 18 8 7
37 37 H 1.09002 * 115.55351 * 29.83283 * 19 18 8
38 38 H 1.09004 * 117.50317 * 0.02562 * 20 19 18
39 39 H 1.09001 * 117.50134 * 145.02094 * 20 19 18
40 40 H 1.09004 * 117.49296 * 214.97769 * 21 19 18
41 41 H 1.08995 * 117.49854 * 359.97438 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6767 -1.7490 1.2491
6 8 1.5637 -0.0477 2.4160
7 6 3.5701 -0.7219 1.2489
8 7 4.0597 -1.5147 2.3844
9 6 5.4677 -1.8892 2.1969
10 6 5.8241 -2.9984 3.1527
11 1 5.0600 -3.4428 3.7732
12 6 7.1257 -3.4459 3.2350
13 7 7.4366 -4.4143 4.0687
14 14 8.4474 -2.6767 2.1622
15 1 9.0592 -1.5282 2.8777
16 1 9.4931 -3.6879 1.8637
17 1 7.8405 -2.2025 0.8926
18 6 3.8708 -0.7937 3.6503
19 6 4.6321 0.5325 3.6004
20 6 5.7873 0.7214 4.5855
21 6 4.4749 1.4825 4.7894
22 1 -0.3632 0.5139 0.8901
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.8933 -0.5138 -0.8901
26 1 1.6767 1.9563 -0.8899
27 1 1.6768 1.9562 0.8900
28 1 3.1301 1.4425 0.0005
29 1 1.8491 0.8738 2.4822
30 1 3.9330 -1.1577 0.3180
31 1 3.9337 0.3019 1.3368
32 1 5.6199 -2.2292 1.1726
33 1 6.1025 -1.0245 2.3909
34 1 8.3522 -4.7294 4.1264
35 1 2.8093 -0.5978 3.8020
36 1 4.2496 -1.3993 4.4735
37 1 4.7365 0.9777 2.6109
38 1 6.0053 -0.0992 5.2691
39 1 6.6517 1.2912 4.2444
40 1 4.4764 2.5527 4.5822
41 1 3.8289 1.1628 5.6070
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000336704999.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:07
Heat of formation + Delta-G solvation = -29.509377 kcal
Electronic energy + Delta-G solvation = -18657.492508 eV
Core-core repulsion = 15959.106060 eV
Total energy + Delta-G solvation = -2698.386448 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.15549 -37.23366 -34.85321 -33.68577 -32.35996 -28.95817 -27.58670 -27.24916
-24.87560 -22.56222 -21.91319 -21.34450 -19.86011 -19.07885 -16.76340 -16.33934
-15.84420 -15.49544 -14.83436 -14.36017 -14.13430 -13.99816 -13.44540 -13.09897
-12.87613 -12.35451 -12.21482 -12.06656 -11.77762 -11.53665 -11.27804 -11.16704
-11.02009 -10.88960 -10.82484 -10.68268 -10.55333 -10.38829 -10.05794 -9.78496
-9.58641 -9.22361 -8.88949 -8.52059 -7.22547 -6.00269 -3.95792 3.29314
3.37070 3.38828 4.25417 4.45471 4.51300 4.72510 4.92720 4.98407
5.13116 5.18690 5.31834 5.38578 5.43261 5.53111 5.59058 5.62156
5.70415 5.81994 5.84520 5.91689 5.97722 6.05343 6.10336 6.14641
6.30219 6.34006 6.38722 6.48934 6.55303 6.62532 6.93552 7.00304
7.10605 7.70209 7.87543 7.99884 8.15586 8.73721 9.11037 9.62823
11.13322
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023803 B = 0.007301 C = 0.006459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.040067 B = 3834.261403 C = 4333.665858
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.129 4.129
3 C -0.153 4.153
4 C 0.118 3.882
5 H 0.104 0.896
6 O -0.550 6.550
7 C 0.015 3.985
8 N -0.515 5.515
9 C 0.160 3.840
10 C -0.500 4.500
11 H 0.079 0.921
12 C 0.068 3.932
13 N -0.903 5.903
14 Si 0.873 3.127
15 H -0.278 1.278
16 H -0.287 1.287
17 H -0.270 1.270
18 C 0.080 3.920
19 C -0.177 4.177
20 C -0.173 4.173
21 C -0.185 4.185
22 H 0.060 0.940
23 H 0.047 0.953
24 H 0.054 0.946
25 H 0.076 0.924
26 H 0.054 0.946
27 H 0.054 0.946
28 H 0.058 0.942
29 H 0.364 0.636
30 H 0.070 0.930
31 H 0.036 0.964
32 H 0.019 0.981
33 H -0.008 1.008
34 H 0.262 0.738
35 H 0.094 0.906
36 H 0.079 0.921
37 H 0.093 0.907
38 H 0.100 0.900
39 H 0.081 0.919
40 H 0.082 0.918
41 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.745 12.998 -6.068 17.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.149 4.149
3 C -0.210 4.210
4 C 0.059 3.941
5 H 0.122 0.878
6 O -0.356 6.356
7 C -0.114 4.114
8 N -0.237 5.237
9 C 0.033 3.967
10 C -0.538 4.538
11 H 0.097 0.903
12 C -0.133 4.133
13 N -0.542 5.542
14 Si 0.700 3.300
15 H -0.204 1.204
16 H -0.213 1.213
17 H -0.195 1.195
18 C -0.049 4.049
19 C -0.197 4.197
20 C -0.210 4.210
21 C -0.222 4.222
22 H 0.079 0.921
23 H 0.067 0.933
24 H 0.073 0.927
25 H 0.094 0.906
26 H 0.073 0.927
27 H 0.073 0.927
28 H 0.077 0.923
29 H 0.211 0.789
30 H 0.089 0.911
31 H 0.053 0.947
32 H 0.037 0.963
33 H 0.010 0.990
34 H 0.072 0.928
35 H 0.112 0.888
36 H 0.098 0.902
37 H 0.111 0.889
38 H 0.118 0.882
39 H 0.099 0.901
40 H 0.100 0.900
41 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -10.133 11.837 -5.886 16.657
hybrid contribution 1.864 1.648 -0.851 2.630
sum -8.268 13.485 -6.737 17.193
Atomic orbital electron populations
1.21726 0.94738 1.01838 1.01437 1.21805 0.96624 0.96823 0.99605
1.21895 1.01306 0.96164 1.01655 1.22008 0.92523 0.96353 0.83203
0.87826 1.86576 1.76888 1.28286 1.43818 1.22921 0.95462 0.96902
0.96144 1.62142 1.21929 1.39293 1.00314 1.20219 0.83803 0.95470
0.97166 1.21020 0.94753 1.16639 1.21398 0.90253 1.24877 0.98225
0.94976 0.95221 1.69894 1.19100 1.28135 1.37087 0.86904 0.82197
0.79228 0.81636 1.20394 1.21323 1.19473 1.22105 0.99995 0.89206
0.93554 1.23101 1.02850 0.99760 0.94012 1.22961 0.91576 1.02869
1.03610 1.22871 1.01463 0.96790 1.01126 0.92114 0.93345 0.92721
0.90596 0.92725 0.92667 0.92312 0.78863 0.91132 0.94662 0.96341
0.99025 0.92813 0.88836 0.90223 0.88949 0.88186 0.90051 0.89956
0.89039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.42 9.05 37.16 0.34 -1.08 16
2 C -0.13 -1.41 2.81 -90.62 -0.25 -1.67 16
3 C -0.15 -1.48 8.54 37.16 0.32 -1.17 16
4 C 0.12 1.63 2.99 -26.73 -0.08 1.55 16
5 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16
6 O -0.55 -7.55 9.57 -35.23 -0.34 -7.89 16
7 C 0.01 0.24 4.15 -3.83 -0.02 0.22 16
8 N -0.52 -10.57 4.60 -236.08 -1.09 -11.65 16
9 C 0.16 3.86 3.68 -4.98 -0.02 3.84 16
10 C -0.50 -14.25 9.01 -34.44 -0.31 -14.56 16
11 H 0.08 2.49 7.92 -52.49 -0.42 2.08 16
12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
13 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16
14 Si 0.87 21.79 27.37 -169.99 -4.65 17.14 16
15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
17 H -0.27 -6.51 6.69 56.52 0.38 -6.13 16
18 C 0.08 1.50 5.15 -3.82 -0.02 1.48 16
19 C -0.18 -2.95 4.19 -90.62 -0.38 -3.33 16
20 C -0.17 -2.97 10.06 -26.69 -0.27 -3.24 16
21 C -0.18 -2.62 10.26 -26.69 -0.27 -2.90 16
22 H 0.06 0.63 7.68 -51.93 -0.40 0.24 16
23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
27 H 0.05 0.50 6.78 -51.93 -0.35 0.14 16
28 H 0.06 0.60 6.54 -51.92 -0.34 0.26 16
29 H 0.36 4.15 7.33 45.56 0.33 4.49 16
30 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16
31 H 0.04 0.54 4.15 -51.93 -0.22 0.32 16
32 H 0.02 0.46 7.12 -51.93 -0.37 0.09 16
33 H -0.01 -0.19 5.94 -51.93 -0.31 -0.50 16
34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
35 H 0.09 1.65 5.34 -51.93 -0.28 1.37 16
36 H 0.08 1.76 7.02 -51.93 -0.36 1.40 16
37 H 0.09 1.51 5.91 -51.93 -0.31 1.20 16
38 H 0.10 1.90 8.03 -51.93 -0.42 1.49 16
39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
41 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16
LS Contribution 312.67 15.07 4.71 4.71
Total: -1.00 -30.31 312.67 -8.03 -38.34
By element:
Atomic # 1 Polarization: 11.78 SS G_CDS: -6.37 Total: 5.41 kcal
Atomic # 6 Polarization: -17.90 SS G_CDS: -1.06 Total: -18.97 kcal
Atomic # 7 Polarization: -38.44 SS G_CDS: -0.31 Total: -38.75 kcal
Atomic # 8 Polarization: -7.55 SS G_CDS: -0.34 Total: -7.89 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -4.65 Total: 17.14 kcal
Total LS contribution 4.71 Total: 4.71 kcal
Total: -30.31 -8.03 -38.34 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336704999.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.829 kcal
(2) G-P(sol) polarization free energy of solvation -30.311 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.509 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds