Wall clock time and date at job start Mon Mar 30 2020 04:49:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47254 * 2 1
4 4 C 1.53002 * 109.47306 * 120.00305 * 2 1 3
5 5 H 1.08999 * 109.46906 * 60.00081 * 4 2 1
6 6 O 1.42898 * 109.46823 * 300.00073 * 4 2 1
7 7 C 1.53003 * 109.47253 * 179.97438 * 4 2 1
8 8 N 1.46892 * 109.47103 * 184.92058 * 7 4 2
9 9 C 1.46900 * 111.00368 * 162.43962 * 8 7 4
10 10 C 1.50693 * 109.47459 * 195.79510 * 9 8 7
11 11 H 1.07997 * 119.99923 * 5.10557 * 10 9 8
12 12 C 1.37882 * 119.99902 * 185.10792 * 10 9 8
13 13 N 1.31513 * 119.99913 * 180.02562 * 12 10 9
14 14 Si 1.86795 * 120.00092 * 0.02562 * 12 10 9
15 15 H 1.48500 * 109.47063 * 90.00178 * 14 12 10
16 16 H 1.48497 * 109.47246 * 210.00069 * 14 12 10
17 17 H 1.48501 * 109.47194 * 330.00216 * 14 12 10
18 18 C 1.46908 * 110.99958 * 286.39141 * 8 7 4
19 19 C 1.52994 * 109.47091 * 300.49857 * 18 8 7
20 20 C 1.52998 * 117.49737 * 244.15974 * 19 18 8
21 21 C 1.53007 * 117.49624 * 175.50286 * 19 18 8
22 22 H 1.09004 * 109.46566 * 299.99975 * 1 2 3
23 23 H 1.09004 * 109.47062 * 59.99815 * 1 2 3
24 24 H 1.08993 * 109.47384 * 179.97438 * 1 2 3
25 25 H 1.09006 * 109.47021 * 240.00296 * 2 1 3
26 26 H 1.08994 * 109.47246 * 300.00065 * 3 2 1
27 27 H 1.08995 * 109.47178 * 60.00608 * 3 2 1
28 28 H 1.09008 * 109.47296 * 179.97438 * 3 2 1
29 29 H 0.96701 * 113.99838 * 299.99106 * 6 4 2
30 30 H 1.09003 * 109.47014 * 304.91972 * 7 4 2
31 31 H 1.08998 * 109.46568 * 64.91781 * 7 4 2
32 32 H 1.08998 * 109.46873 * 315.80217 * 9 8 7
33 33 H 1.09003 * 109.46771 * 75.79553 * 9 8 7
34 34 H 0.96996 * 120.00146 * 179.97438 * 13 12 10
35 35 H 1.09001 * 109.46908 * 60.49782 * 18 8 7
36 36 H 1.08998 * 109.47324 * 180.49242 * 18 8 7
37 37 H 1.09002 * 115.55351 * 29.83283 * 19 18 8
38 38 H 1.09004 * 117.50317 * 0.02562 * 20 19 18
39 39 H 1.09001 * 117.50134 * 145.02094 * 20 19 18
40 40 H 1.09004 * 117.49296 * 214.97769 * 21 19 18
41 41 H 1.08995 * 117.49854 * 359.97438 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 1 1.6767 -1.7490 1.2491
6 8 1.5637 -0.0477 2.4160
7 6 3.5701 -0.7219 1.2489
8 7 4.0597 -1.5147 2.3844
9 6 5.4677 -1.8892 2.1969
10 6 5.8241 -2.9984 3.1527
11 1 5.0600 -3.4428 3.7732
12 6 7.1257 -3.4459 3.2350
13 7 7.4366 -4.4143 4.0687
14 14 8.4474 -2.6767 2.1622
15 1 9.0592 -1.5282 2.8777
16 1 9.4931 -3.6879 1.8637
17 1 7.8405 -2.2025 0.8926
18 6 3.8708 -0.7937 3.6503
19 6 4.6321 0.5325 3.6004
20 6 5.7873 0.7214 4.5855
21 6 4.4749 1.4825 4.7894
22 1 -0.3632 0.5139 0.8901
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.8933 -0.5138 -0.8901
26 1 1.6767 1.9563 -0.8899
27 1 1.6768 1.9562 0.8900
28 1 3.1301 1.4425 0.0005
29 1 1.8491 0.8738 2.4822
30 1 3.9330 -1.1577 0.3180
31 1 3.9337 0.3019 1.3368
32 1 5.6199 -2.2292 1.1726
33 1 6.1025 -1.0245 2.3909
34 1 8.3522 -4.7294 4.1264
35 1 2.8093 -0.5978 3.8020
36 1 4.2496 -1.3993 4.4735
37 1 4.7365 0.9777 2.6109
38 1 6.0053 -0.0992 5.2691
39 1 6.6517 1.2912 4.2444
40 1 4.4764 2.5527 4.5822
41 1 3.8289 1.1628 5.6070
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000336704999.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:49:06
Heat of formation + Delta-G solvation = -50.668677 kcal
Electronic energy + Delta-G solvation = -18658.410045 eV
Core-core repulsion = 15959.106060 eV
Total energy + Delta-G solvation = -2699.303984 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.42793 -38.46606 -36.37806 -34.64969 -34.50369 -30.58831 -29.18814 -28.02705
-26.45833 -23.98969 -23.14835 -23.01454 -20.86974 -20.56115 -18.87882 -17.52436
-17.12316 -16.82625 -16.21234 -15.99309 -15.50035 -15.42967 -14.78525 -14.52137
-14.27224 -13.76575 -13.53870 -13.33403 -12.89108 -12.81677 -12.68987 -12.55874
-12.49793 -12.31796 -12.22145 -11.93595 -11.87485 -11.69608 -11.65582 -11.39874
-11.08665 -10.85666 -10.75466 -10.22502 -8.81224 -8.26877 -6.28149 1.31213
1.32904 1.43611 2.33739 2.95154 3.07536 3.25418 3.61297 3.87958
3.99680 4.00421 4.10047 4.14252 4.17365 4.36335 4.50808 4.58646
4.72276 4.77384 4.80683 4.82895 4.86948 4.93397 5.02181 5.06663
5.07857 5.17137 5.17723 5.22727 5.26423 5.31101 5.47865 5.49860
5.53926 5.63898 6.06045 6.49810 6.73805 6.78603 6.93481 7.35119
8.90595
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023803 B = 0.007301 C = 0.006459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.040067 B = 3834.261403 C = 4333.665858
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.122 4.122
3 C -0.151 4.151
4 C 0.127 3.873
5 H 0.081 0.919
6 O -0.559 6.559
7 C 0.017 3.983
8 N -0.537 5.537
9 C 0.174 3.826
10 C -0.505 4.505
11 H 0.030 0.970
12 C 0.008 3.992
13 N -0.951 5.951
14 Si 0.944 3.056
15 H -0.268 1.268
16 H -0.282 1.282
17 H -0.250 1.250
18 C 0.088 3.912
19 C -0.183 4.183
20 C -0.199 4.199
21 C -0.147 4.147
22 H 0.057 0.943
23 H 0.064 0.936
24 H 0.046 0.954
25 H 0.077 0.923
26 H 0.068 0.932
27 H 0.064 0.936
28 H 0.053 0.947
29 H 0.377 0.623
30 H 0.068 0.932
31 H 0.055 0.945
32 H 0.017 0.983
33 H -0.004 1.004
34 H 0.265 0.735
35 H 0.108 0.892
36 H 0.033 0.967
37 H 0.106 0.894
38 H 0.066 0.934
39 H 0.091 0.909
40 H 0.116 0.884
41 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.118 16.119 -7.922 20.615
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.141 4.141
3 C -0.208 4.208
4 C 0.067 3.933
5 H 0.099 0.901
6 O -0.366 6.366
7 C -0.111 4.111
8 N -0.259 5.259
9 C 0.046 3.954
10 C -0.543 4.543
11 H 0.048 0.952
12 C -0.189 4.189
13 N -0.593 5.593
14 Si 0.768 3.232
15 H -0.193 1.193
16 H -0.208 1.208
17 H -0.174 1.174
18 C -0.040 4.040
19 C -0.203 4.203
20 C -0.236 4.236
21 C -0.184 4.184
22 H 0.077 0.923
23 H 0.083 0.917
24 H 0.065 0.935
25 H 0.096 0.904
26 H 0.087 0.913
27 H 0.083 0.917
28 H 0.073 0.927
29 H 0.226 0.774
30 H 0.087 0.913
31 H 0.072 0.928
32 H 0.035 0.965
33 H 0.013 0.987
34 H 0.074 0.926
35 H 0.126 0.874
36 H 0.051 0.949
37 H 0.124 0.876
38 H 0.085 0.915
39 H 0.109 0.891
40 H 0.134 0.866
41 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges -10.533 14.982 -7.745 19.885
hybrid contribution 1.872 0.619 -0.188 1.981
sum -8.661 15.601 -7.933 19.528
Atomic orbital electron populations
1.21699 0.93982 1.01625 1.02131 1.21719 0.97143 0.97490 0.97747
1.21884 1.00978 0.95075 1.02852 1.21825 0.90661 0.95968 0.84808
0.90108 1.86543 1.76795 1.29361 1.43945 1.23025 0.97036 0.97029
0.94052 1.62015 1.19659 1.41827 1.02434 1.19914 0.86243 0.93853
0.95346 1.21237 0.93891 1.17719 1.21501 0.95195 1.25804 1.00918
0.95425 0.96734 1.70059 1.19903 1.30062 1.39247 0.85761 0.78753
0.78489 0.80230 1.19307 1.20820 1.17417 1.21939 1.00941 0.89661
0.91431 1.22969 1.02593 0.99296 0.95418 1.22933 0.93314 1.03289
1.04046 1.22959 0.98308 0.97914 0.99219 0.92349 0.91671 0.93467
0.90412 0.91341 0.91748 0.92749 0.77390 0.91332 0.92761 0.96453
0.98664 0.92618 0.87386 0.94851 0.87615 0.91487 0.89053 0.86597
0.88586
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.43 9.05 71.98 0.65 -1.78 16
2 C -0.12 -2.34 2.81 -10.79 -0.03 -2.37 16
3 C -0.15 -2.36 8.54 71.98 0.61 -1.75 16
4 C 0.13 3.30 2.99 30.60 0.09 3.39 16
5 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16
6 O -0.56 -14.22 9.57 -148.98 -1.43 -15.65 16
7 C 0.02 0.51 4.15 86.31 0.36 0.87 16
8 N -0.54 -22.17 4.60 -900.81 -4.15 -26.31 16
9 C 0.17 8.42 3.68 85.55 0.31 8.73 16
10 C -0.50 -30.04 9.01 25.60 0.23 -29.81 16
11 H 0.03 2.02 7.92 -2.91 -0.02 1.99 16
12 C 0.01 0.46 5.47 84.66 0.46 0.93 16
13 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16
14 Si 0.94 45.11 27.37 68.60 1.88 46.98 16
15 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16
16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16
17 H -0.25 -11.11 6.69 99.48 0.67 -10.45 16
18 C 0.09 3.36 5.15 86.30 0.44 3.81 16
19 C -0.18 -5.78 4.19 -10.79 -0.05 -5.82 16
20 C -0.20 -6.66 10.06 30.62 0.31 -6.35 16
21 C -0.15 -3.73 10.26 30.62 0.31 -3.42 16
22 H 0.06 1.07 7.68 -2.38 -0.02 1.05 16
23 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16
24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16
25 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16
26 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16
27 H 0.06 0.90 6.78 -2.39 -0.02 0.88 16
28 H 0.05 0.91 6.54 -2.38 -0.02 0.89 16
29 H 0.38 7.37 7.33 -74.06 -0.54 6.82 16
30 H 0.07 2.14 7.69 -2.39 -0.02 2.12 16
31 H 0.05 1.48 4.15 -2.39 -0.01 1.47 16
32 H 0.02 0.85 7.12 -2.39 -0.02 0.83 16
33 H 0.00 -0.21 5.94 -2.39 -0.01 -0.22 16
34 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16
35 H 0.11 3.77 5.34 -2.39 -0.01 3.75 16
36 H 0.03 1.56 7.02 -2.39 -0.02 1.54 16
37 H 0.11 3.09 5.91 -2.39 -0.01 3.08 16
38 H 0.07 2.66 8.03 -2.39 -0.02 2.65 16
39 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16
40 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16
41 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16
Total: -1.00 -68.54 312.67 0.74 -67.81
By element:
Atomic # 1 Polarization: 21.02 SS G_CDS: 0.42 Total: 21.44 kcal
Atomic # 6 Polarization: -37.29 SS G_CDS: 3.72 Total: -33.57 kcal
Atomic # 7 Polarization: -83.17 SS G_CDS: -3.85 Total: -87.01 kcal
Atomic # 8 Polarization: -14.22 SS G_CDS: -1.43 Total: -15.65 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.98 kcal
Total: -68.54 0.74 -67.81 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336704999.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.140 kcal
(2) G-P(sol) polarization free energy of solvation -68.545 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.405 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.809 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds