Wall clock time and date at job start Mon Mar 30 2020 03:21:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53000 * 109.45371 * 2 1
4 4 O 1.42906 * 109.47147 * 299.96835 * 3 2 1
5 5 C 1.53036 * 109.46410 * 240.02526 * 2 1 3
6 6 C 1.53126 * 109.27437 * 299.16039 * 5 2 1
7 7 C 1.53115 * 109.16202 * 302.34403 * 6 5 2
8 8 C 1.53038 * 109.27529 * 57.65721 * 7 6 5
9 9 N 1.46844 * 109.52314 * 300.81457 * 8 7 6
10 10 C 1.46904 * 110.99834 * 185.84071 * 9 8 7
11 11 C 1.52997 * 109.47265 * 45.79297 * 10 9 8
12 12 C 1.52999 * 109.47415 * 179.97438 * 11 10 9
13 13 C 1.50695 * 109.47057 * 180.02562 * 12 11 10
14 14 H 1.07999 * 120.00538 * 359.97438 * 13 12 11
15 15 C 1.37881 * 119.99661 * 179.97438 * 13 12 11
16 16 N 1.31520 * 120.00186 * 359.97438 * 15 13 12
17 17 Si 1.86798 * 120.00030 * 179.97438 * 15 13 12
18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13
19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13
20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13
21 21 H 1.08998 * 109.46795 * 300.02931 * 1 2 3
22 22 H 1.08996 * 109.47249 * 60.02900 * 1 2 3
23 23 H 1.08997 * 109.47181 * 180.02562 * 1 2 3
24 24 H 1.08999 * 109.47678 * 59.97282 * 3 2 1
25 25 H 1.09003 * 109.47171 * 179.97438 * 3 2 1
26 26 H 0.96689 * 114.00065 * 179.97438 * 4 3 2
27 27 H 1.08994 * 109.50136 * 59.10030 * 5 2 1
28 28 H 1.08996 * 109.50339 * 179.22542 * 5 2 1
29 29 H 1.08999 * 109.52032 * 62.25342 * 6 5 2
30 30 H 1.09000 * 109.52096 * 182.37507 * 6 5 2
31 31 H 1.08999 * 109.50127 * 177.59602 * 7 6 5
32 32 H 1.08997 * 109.50751 * 297.67422 * 7 6 5
33 33 H 1.09006 * 109.45901 * 180.80248 * 8 7 6
34 34 H 1.08998 * 109.46778 * 60.83816 * 8 7 6
35 35 H 1.09002 * 109.47117 * 285.78991 * 10 9 8
36 36 H 1.08998 * 109.47117 * 165.79108 * 10 9 8
37 37 H 1.09002 * 109.47302 * 59.99808 * 11 10 9
38 38 H 1.08998 * 109.46899 * 299.99946 * 11 10 9
39 39 H 1.09002 * 109.46997 * 59.99676 * 12 11 10
40 40 H 1.09000 * 109.46625 * 300.00101 * 12 11 10
41 41 H 0.97001 * 119.99697 * 359.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0396 1.4426 0.0000
4 8 1.5636 2.1160 -1.1672
5 6 2.0399 -0.7209 -1.2499
6 6 1.5443 -2.1697 -1.2354
7 6 2.0270 -2.8531 0.0469
8 6 1.5174 -2.0704 1.2592
9 7 2.0193 -0.6917 1.1994
10 6 1.6651 0.0507 2.4166
11 6 1.9651 -0.8107 3.6449
12 6 1.5968 -0.0373 4.9126
13 6 1.8929 -0.8855 6.1224
14 1 2.3025 -1.8773 5.9995
15 6 1.6410 -0.3955 7.3863
16 7 1.1428 0.8124 7.5361
17 14 2.0074 -1.4472 8.8860
18 1 3.4002 -1.1981 9.3370
19 1 1.8497 -2.8816 8.5352
20 1 1.0636 -1.0981 9.9780
21 1 -0.3633 0.5143 0.8897
22 1 -0.3633 0.5134 -0.8902
23 1 -0.3633 -1.0276 0.0005
24 1 1.6757 1.9566 0.8897
25 1 3.1296 1.4430 0.0005
26 1 1.8483 3.0376 -1.2331
27 1 1.6637 -0.2165 -2.1398
28 1 3.1298 -0.7093 -1.2575
29 1 0.4549 -2.1822 -1.2670
30 1 1.9400 -2.6987 -2.1024
31 1 1.6415 -3.8721 0.0834
32 1 3.1167 -2.8757 0.0593
33 1 1.8713 -2.5464 2.1737
34 1 0.4275 -2.0607 1.2534
35 1 0.6035 0.2970 2.3960
36 1 2.2502 0.9691 2.4652
37 1 3.0268 -1.0569 3.6655
38 1 1.3801 -1.7290 3.5963
39 1 0.5353 0.2093 4.8922
40 1 2.1823 0.8809 4.9609
41 1 0.9529 1.3587 6.7573
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000351643720.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:48
Heat of formation + Delta-G solvation = -68.941826 kcal
Electronic energy + Delta-G solvation = -18409.902410 eV
Core-core repulsion = 15709.806042 eV
Total energy + Delta-G solvation = -2700.096368 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.13936 -36.58328 -34.97467 -33.23912 -32.26179 -30.42739 -27.56165 -26.32655
-25.80676 -24.09607 -22.31261 -21.08080 -20.00881 -18.17576 -17.51790 -16.77091
-15.74033 -15.25630 -14.93146 -14.59385 -14.41707 -13.71879 -13.36413 -13.25507
-13.06122 -12.91995 -12.60192 -12.49488 -11.97668 -11.56222 -11.42936 -11.30302
-11.00971 -10.91451 -10.73929 -10.45072 -10.20236 -10.16559 -10.08116 -9.84411
-9.72626 -9.60871 -8.51307 -8.30042 -8.00167 -6.34175 -4.02708 3.44688
3.48363 3.64088 3.78906 4.45606 4.57111 4.76448 4.82807 4.99063
5.04480 5.26161 5.34274 5.43029 5.49752 5.54215 5.56789 5.64823
5.69466 5.79675 5.80494 5.93557 5.95928 6.05227 6.07677 6.15268
6.17128 6.25130 6.31391 6.47251 6.61539 6.67482 6.95891 7.33665
7.38313 7.43522 7.54993 7.57708 8.25209 8.49330 8.91222 9.69603
11.06539
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.033947 B = 0.005134 C = 0.004646
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 824.616354 B = 5452.060355 C = 6025.354060
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.113 3.887
3 C 0.085 3.915
4 O -0.572 6.572
5 C -0.098 4.098
6 C -0.123 4.123
7 C -0.117 4.117
8 C 0.047 3.953
9 N -0.525 5.525
10 C 0.048 3.952
11 C -0.104 4.104
12 C 0.009 3.991
13 C -0.599 4.599
14 H 0.048 0.952
15 C 0.013 3.987
16 N -0.915 5.915
17 Si 1.071 2.929
18 H -0.288 1.288
19 H -0.289 1.289
20 H -0.285 1.285
21 H 0.056 0.944
22 H 0.065 0.935
23 H 0.060 0.940
24 H 0.049 0.951
25 H 0.053 0.947
26 H 0.378 0.622
27 H 0.069 0.931
28 H 0.065 0.935
29 H 0.059 0.941
30 H 0.059 0.941
31 H 0.063 0.937
32 H 0.069 0.931
33 H 0.088 0.912
34 H 0.035 0.965
35 H 0.033 0.967
36 H 0.069 0.931
37 H 0.057 0.943
38 H 0.052 0.948
39 H 0.004 0.996
40 H 0.006 0.994
41 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.947 -2.014 -17.993 18.130
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.023 3.977
3 C 0.007 3.993
4 O -0.377 6.377
5 C -0.136 4.136
6 C -0.160 4.160
7 C -0.154 4.154
8 C -0.080 4.080
9 N -0.251 5.251
10 C -0.079 4.079
11 C -0.142 4.142
12 C -0.028 4.028
13 C -0.638 4.638
14 H 0.067 0.933
15 C -0.190 4.190
16 N -0.552 5.552
17 Si 0.900 3.100
18 H -0.215 1.215
19 H -0.215 1.215
20 H -0.210 1.210
21 H 0.075 0.925
22 H 0.084 0.916
23 H 0.078 0.922
24 H 0.067 0.933
25 H 0.071 0.929
26 H 0.224 0.776
27 H 0.088 0.912
28 H 0.084 0.916
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.081 0.919
32 H 0.087 0.913
33 H 0.107 0.893
34 H 0.054 0.946
35 H 0.051 0.949
36 H 0.087 0.913
37 H 0.076 0.924
38 H 0.071 0.929
39 H 0.022 0.978
40 H 0.024 0.976
41 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 1.125 -2.641 -16.481 16.729
hybrid contribution -0.555 0.679 -1.428 1.676
sum 0.570 -1.962 -17.909 18.025
Atomic orbital electron populations
1.22423 0.96788 1.02001 1.02473 1.20876 0.92996 0.92157 0.91630
1.22196 0.97773 0.92229 0.87093 1.86394 1.77758 1.28836 1.44692
1.21508 1.00876 0.94789 0.96390 1.21639 1.00637 0.96012 0.97738
1.21602 1.01614 0.98088 0.94136 1.22229 0.97594 0.88941 0.99247
1.62175 1.59284 1.02150 1.01469 1.22405 0.98525 0.97687 0.89305
1.21659 1.00980 0.98168 0.93390 1.19198 0.95547 0.95685 0.92417
1.22076 1.46574 1.02703 0.92426 0.93328 1.25859 0.94260 0.97761
1.01136 1.70757 1.41112 1.09222 1.34073 0.83514 0.76583 0.74668
0.75254 1.21453 1.21507 1.21030 0.92541 0.91606 0.92157 0.93270
0.92896 0.77574 0.91202 0.91598 0.92188 0.92200 0.91874 0.91257
0.89347 0.94644 0.94862 0.91267 0.92419 0.92915 0.97770 0.97558
0.92158
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.41 7.34 37.16 0.27 -2.14 16
2 C 0.11 1.53 0.52 -131.61 -0.07 1.46 16
3 C 0.09 1.08 5.50 37.16 0.20 1.28 16
4 O -0.57 -6.45 12.33 -35.23 -0.43 -6.88 16
5 C -0.10 -1.19 4.73 -26.65 -0.13 -1.32 16
6 C -0.12 -1.37 5.69 -26.61 -0.15 -1.52 16
7 C -0.12 -1.40 6.09 -26.65 -0.16 -1.56 16
8 C 0.05 0.69 4.55 -3.84 -0.02 0.67 16
9 N -0.53 -8.04 4.59 -219.01 -1.00 -9.05 16
10 C 0.05 0.84 4.24 -3.82 -0.02 0.82 16
11 C -0.10 -2.19 4.40 -26.73 -0.12 -2.31 16
12 C 0.01 0.24 4.28 -27.89 -0.12 0.12 16
13 C -0.60 -17.40 9.11 -34.44 -0.31 -17.71 16
14 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16
15 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16
16 N -0.92 -28.48 13.65 55.43 0.76 -27.72 16
17 Si 1.07 25.71 29.90 -169.99 -5.08 20.63 16
18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
21 H 0.06 0.82 6.36 -51.93 -0.33 0.49 16
22 H 0.06 0.86 7.68 -51.93 -0.40 0.46 16
23 H 0.06 0.80 4.80 -51.93 -0.25 0.55 16
24 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16
25 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
26 H 0.38 2.60 9.12 45.56 0.42 3.01 16
27 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16
28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16
30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.09 1.39 5.81 -51.93 -0.30 1.09 16
34 H 0.04 0.52 6.19 -51.93 -0.32 0.20 16
35 H 0.03 0.60 6.07 -51.93 -0.32 0.28 16
36 H 0.07 1.21 6.84 -51.93 -0.36 0.86 16
37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
38 H 0.05 1.10 6.21 -51.93 -0.32 0.77 16
39 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16
40 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16
41 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16
LS Contribution 303.44 15.07 4.57 4.57
Total: -1.00 -31.59 303.44 -8.03 -39.62
By element:
Atomic # 1 Polarization: 6.86 SS G_CDS: -6.13 Total: 0.74 kcal
Atomic # 6 Polarization: -21.19 SS G_CDS: -0.71 Total: -21.91 kcal
Atomic # 7 Polarization: -36.52 SS G_CDS: -0.25 Total: -36.77 kcal
Atomic # 8 Polarization: -6.45 SS G_CDS: -0.43 Total: -6.88 kcal
Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -31.59 -8.03 -39.62 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000351643720.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.321 kcal
(2) G-P(sol) polarization free energy of solvation -31.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.911 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.942 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds