Wall clock time and date at job start Mon Mar 30 2020 03:21:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53000 * 109.45371 * 2 1
4 4 O 1.42906 * 109.47147 * 299.96835 * 3 2 1
5 5 C 1.53036 * 109.46410 * 240.02526 * 2 1 3
6 6 C 1.53126 * 109.27437 * 299.16039 * 5 2 1
7 7 C 1.53115 * 109.16202 * 302.34403 * 6 5 2
8 8 C 1.53038 * 109.27529 * 57.65721 * 7 6 5
9 9 N 1.46844 * 109.52314 * 300.81457 * 8 7 6
10 10 C 1.46904 * 110.99834 * 185.84071 * 9 8 7
11 11 C 1.52997 * 109.47265 * 45.79297 * 10 9 8
12 12 C 1.52999 * 109.47415 * 179.97438 * 11 10 9
13 13 C 1.50695 * 109.47057 * 180.02562 * 12 11 10
14 14 H 1.07999 * 120.00538 * 359.97438 * 13 12 11
15 15 C 1.37881 * 119.99661 * 179.97438 * 13 12 11
16 16 N 1.31520 * 120.00186 * 359.97438 * 15 13 12
17 17 Si 1.86798 * 120.00030 * 179.97438 * 15 13 12
18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13
19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13
20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13
21 21 H 1.08998 * 109.46795 * 300.02931 * 1 2 3
22 22 H 1.08996 * 109.47249 * 60.02900 * 1 2 3
23 23 H 1.08997 * 109.47181 * 180.02562 * 1 2 3
24 24 H 1.08999 * 109.47678 * 59.97282 * 3 2 1
25 25 H 1.09003 * 109.47171 * 179.97438 * 3 2 1
26 26 H 0.96689 * 114.00065 * 179.97438 * 4 3 2
27 27 H 1.08994 * 109.50136 * 59.10030 * 5 2 1
28 28 H 1.08996 * 109.50339 * 179.22542 * 5 2 1
29 29 H 1.08999 * 109.52032 * 62.25342 * 6 5 2
30 30 H 1.09000 * 109.52096 * 182.37507 * 6 5 2
31 31 H 1.08999 * 109.50127 * 177.59602 * 7 6 5
32 32 H 1.08997 * 109.50751 * 297.67422 * 7 6 5
33 33 H 1.09006 * 109.45901 * 180.80248 * 8 7 6
34 34 H 1.08998 * 109.46778 * 60.83816 * 8 7 6
35 35 H 1.09002 * 109.47117 * 285.78991 * 10 9 8
36 36 H 1.08998 * 109.47117 * 165.79108 * 10 9 8
37 37 H 1.09002 * 109.47302 * 59.99808 * 11 10 9
38 38 H 1.08998 * 109.46899 * 299.99946 * 11 10 9
39 39 H 1.09002 * 109.46997 * 59.99676 * 12 11 10
40 40 H 1.09000 * 109.46625 * 300.00101 * 12 11 10
41 41 H 0.97001 * 119.99697 * 359.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0396 1.4426 0.0000
4 8 1.5636 2.1160 -1.1672
5 6 2.0399 -0.7209 -1.2499
6 6 1.5443 -2.1697 -1.2354
7 6 2.0270 -2.8531 0.0469
8 6 1.5174 -2.0704 1.2592
9 7 2.0193 -0.6917 1.1994
10 6 1.6651 0.0507 2.4166
11 6 1.9651 -0.8107 3.6449
12 6 1.5968 -0.0373 4.9126
13 6 1.8929 -0.8855 6.1224
14 1 2.3025 -1.8773 5.9995
15 6 1.6410 -0.3955 7.3863
16 7 1.1428 0.8124 7.5361
17 14 2.0074 -1.4472 8.8860
18 1 3.4002 -1.1981 9.3370
19 1 1.8497 -2.8816 8.5352
20 1 1.0636 -1.0981 9.9780
21 1 -0.3633 0.5143 0.8897
22 1 -0.3633 0.5134 -0.8902
23 1 -0.3633 -1.0276 0.0005
24 1 1.6757 1.9566 0.8897
25 1 3.1296 1.4430 0.0005
26 1 1.8483 3.0376 -1.2331
27 1 1.6637 -0.2165 -2.1398
28 1 3.1298 -0.7093 -1.2575
29 1 0.4549 -2.1822 -1.2670
30 1 1.9400 -2.6987 -2.1024
31 1 1.6415 -3.8721 0.0834
32 1 3.1167 -2.8757 0.0593
33 1 1.8713 -2.5464 2.1737
34 1 0.4275 -2.0607 1.2534
35 1 0.6035 0.2970 2.3960
36 1 2.2502 0.9691 2.4652
37 1 3.0268 -1.0569 3.6655
38 1 1.3801 -1.7290 3.5963
39 1 0.5353 0.2093 4.8922
40 1 2.1823 0.8809 4.9609
41 1 0.9529 1.3587 6.7573
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000351643720.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:47
Heat of formation + Delta-G solvation = -91.182188 kcal
Electronic energy + Delta-G solvation = -18410.866824 eV
Core-core repulsion = 15709.806042 eV
Total energy + Delta-G solvation = -2701.060782 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.26646 -37.58205 -36.63714 -34.94896 -33.43881 -32.08025 -28.77225 -27.79005
-27.02761 -25.60811 -24.11908 -22.10982 -21.62243 -19.33979 -18.86484 -18.46185
-16.94633 -16.53217 -16.04927 -15.94973 -15.64674 -15.48673 -14.94627 -14.67608
-14.31710 -14.24998 -13.77511 -13.54436 -13.44174 -13.21978 -12.92197 -12.57003
-12.46341 -12.30481 -12.04923 -11.96380 -11.77995 -11.69700 -11.40781 -11.12654
-11.10982 -10.81460 -10.65035 -10.55026 -9.25041 -8.70788 -6.41024 1.51580
1.61065 1.78905 2.55234 2.68663 3.14434 3.42286 3.75079 3.87024
3.90769 4.01450 4.11330 4.16088 4.28942 4.40057 4.48352 4.51035
4.51850 4.56883 4.67999 4.71588 4.79540 4.88380 4.92610 4.98649
5.01281 5.06940 5.09065 5.17876 5.22771 5.33305 5.39089 5.47850
5.53800 5.96371 6.07720 6.15905 6.21884 6.56509 6.84140 7.41206
8.70088
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.033947 B = 0.005134 C = 0.004646
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 824.616354 B = 5452.060355 C = 6025.354060
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C 0.108 3.892
3 C 0.089 3.911
4 O -0.577 6.577
5 C -0.093 4.093
6 C -0.120 4.120
7 C -0.111 4.111
8 C 0.043 3.957
9 N -0.526 5.526
10 C 0.061 3.939
11 C -0.088 4.088
12 C 0.010 3.990
13 C -0.618 4.618
14 H 0.050 0.950
15 C -0.040 4.040
16 N -0.938 5.938
17 Si 1.121 2.879
18 H -0.271 1.271
19 H -0.269 1.269
20 H -0.282 1.282
21 H 0.039 0.961
22 H 0.071 0.929
23 H 0.063 0.937
24 H 0.037 0.963
25 H 0.055 0.945
26 H 0.397 0.603
27 H 0.075 0.925
28 H 0.064 0.936
29 H 0.061 0.939
30 H 0.080 0.920
31 H 0.079 0.921
32 H 0.067 0.933
33 H 0.072 0.928
34 H 0.032 0.968
35 H 0.027 0.973
36 H 0.068 0.932
37 H 0.053 0.947
38 H 0.054 0.946
39 H -0.015 1.015
40 H -0.011 1.011
41 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.446 -3.241 -19.133 19.460
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.018 3.982
3 C 0.011 3.989
4 O -0.385 6.385
5 C -0.131 4.131
6 C -0.157 4.157
7 C -0.149 4.149
8 C -0.084 4.084
9 N -0.251 5.251
10 C -0.067 4.067
11 C -0.126 4.126
12 C -0.027 4.027
13 C -0.656 4.656
14 H 0.068 0.932
15 C -0.237 4.237
16 N -0.576 5.576
17 Si 0.942 3.058
18 H -0.197 1.197
19 H -0.193 1.193
20 H -0.207 1.207
21 H 0.058 0.942
22 H 0.090 0.910
23 H 0.081 0.919
24 H 0.055 0.945
25 H 0.073 0.927
26 H 0.247 0.753
27 H 0.094 0.906
28 H 0.083 0.917
29 H 0.080 0.920
30 H 0.099 0.901
31 H 0.098 0.902
32 H 0.086 0.914
33 H 0.091 0.909
34 H 0.050 0.950
35 H 0.045 0.955
36 H 0.086 0.914
37 H 0.072 0.928
38 H 0.073 0.927
39 H 0.003 0.997
40 H 0.007 0.993
41 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 1.631 -3.853 -17.663 18.151
hybrid contribution -0.726 1.108 -1.135 1.744
sum 0.905 -2.745 -18.797 19.018
Atomic orbital electron populations
1.22359 0.96798 1.01999 1.01876 1.21019 0.93018 0.92830 0.91328
1.22053 0.97781 0.91858 0.87219 1.86345 1.77886 1.30485 1.43763
1.21476 1.00748 0.95363 0.95472 1.21636 1.00773 0.95337 0.97947
1.21576 1.01478 0.98583 0.93219 1.22283 0.97443 0.88639 1.00041
1.62180 1.59449 1.02486 1.01013 1.22123 0.98092 0.97170 0.89269
1.21423 1.00493 0.98011 0.92662 1.19140 0.93976 0.95275 0.94327
1.22509 1.46272 1.03104 0.93706 0.93152 1.27490 0.93263 0.98081
1.04887 1.70896 1.42955 1.10295 1.33448 0.82894 0.77231 0.73989
0.71709 1.19670 1.19341 1.20749 0.94224 0.90999 0.91861 0.94482
0.92658 0.75315 0.90648 0.91722 0.92036 0.90135 0.90202 0.91412
0.90943 0.94988 0.95503 0.91365 0.92842 0.92709 0.99653 0.99318
0.93622
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.47 7.34 71.98 0.53 -3.94 16
2 C 0.11 2.77 0.52 3.55 0.00 2.77 16
3 C 0.09 2.17 5.50 71.98 0.40 2.57 16
4 O -0.58 -11.98 12.33 -148.98 -1.84 -13.82 16
5 C -0.09 -2.04 4.73 30.65 0.15 -1.90 16
6 C -0.12 -2.33 5.69 30.68 0.17 -2.15 16
7 C -0.11 -2.41 6.09 30.65 0.19 -2.22 16
8 C 0.04 1.22 4.55 86.33 0.39 1.61 16
9 N -0.53 -15.72 4.59 -846.82 -3.89 -19.61 16
10 C 0.06 2.17 4.24 86.30 0.37 2.54 16
11 C -0.09 -3.76 4.40 30.59 0.13 -3.62 16
12 C 0.01 0.56 4.28 29.85 0.13 0.68 16
13 C -0.62 -36.27 9.11 25.60 0.23 -36.03 16
14 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16
15 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16
16 N -0.94 -59.40 13.65 21.45 0.29 -59.11 16
17 Si 1.12 51.08 29.90 68.60 2.05 53.13 16
18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16
19 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16
20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
21 H 0.04 1.15 6.36 -2.39 -0.02 1.13 16
22 H 0.07 1.77 7.68 -2.39 -0.02 1.75 16
23 H 0.06 1.59 4.80 -2.39 -0.01 1.58 16
24 H 0.04 0.98 6.55 -2.39 -0.02 0.96 16
25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
26 H 0.40 4.72 9.12 -74.06 -0.68 4.04 16
27 H 0.07 1.60 7.71 -2.39 -0.02 1.59 16
28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16
29 H 0.06 1.20 6.56 -2.39 -0.02 1.18 16
30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.07 2.24 5.81 -2.38 -0.01 2.23 16
34 H 0.03 0.92 6.19 -2.39 -0.01 0.90 16
35 H 0.03 0.99 6.07 -2.39 -0.01 0.98 16
36 H 0.07 2.43 6.84 -2.39 -0.02 2.42 16
37 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16
38 H 0.05 2.30 6.21 -2.39 -0.01 2.28 16
39 H -0.01 -0.84 8.01 -2.39 -0.02 -0.86 16
40 H -0.01 -0.65 8.01 -2.39 -0.02 -0.67 16
41 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16
Total: -1.00 -67.39 303.44 0.20 -67.19
By element:
Atomic # 1 Polarization: 13.41 SS G_CDS: 0.43 Total: 13.84 kcal
Atomic # 6 Polarization: -44.77 SS G_CDS: 3.15 Total: -41.62 kcal
Atomic # 7 Polarization: -75.12 SS G_CDS: -3.59 Total: -78.72 kcal
Atomic # 8 Polarization: -11.98 SS G_CDS: -1.84 Total: -13.82 kcal
Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal
Total: -67.39 0.20 -67.19 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000351643720.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.995 kcal
(2) G-P(sol) polarization free energy of solvation -67.388 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.188 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.182 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds