Wall clock time and date at job start Mon Mar 30 2020 04:46:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42903 * 113.99965 * 2 1
4 4 H 1.09001 * 109.46681 * 12.41174 * 3 2 1
5 5 C 1.52995 * 109.46789 * 132.40844 * 3 2 1
6 6 N 1.46898 * 109.47406 * 300.00114 * 5 3 2
7 7 C 1.46903 * 110.99998 * 180.02562 * 6 5 3
8 8 C 1.53007 * 109.46767 * 185.29701 * 7 6 5
9 9 C 1.50699 * 115.54750 * 64.77695 * 8 7 6
10 10 H 1.07998 * 119.99684 * 264.87982 * 9 8 7
11 11 C 1.37871 * 120.00478 * 84.88369 * 9 8 7
12 12 N 1.31517 * 119.99676 * 1.80738 * 11 9 8
13 13 Si 1.86799 * 120.00479 * 181.80768 * 11 9 8
14 14 H 1.48500 * 109.47068 * 359.97438 * 13 11 9
15 15 H 1.48500 * 109.47360 * 120.00051 * 13 11 9
16 16 H 1.48500 * 109.47017 * 240.00192 * 13 11 9
17 17 C 1.53000 * 117.49840 * 279.10117 * 8 7 6
18 18 C 1.52999 * 117.49588 * 210.44353 * 8 7 6
19 19 C 1.52995 * 109.47176 * 252.40791 * 3 2 1
20 20 C 1.53001 * 109.47298 * 54.36520 * 19 3 2
21 21 C 1.53000 * 109.47131 * 174.35986 * 19 3 2
22 22 H 1.09007 * 109.46551 * 185.00938 * 1 2 3
23 23 H 1.08995 * 109.47349 * 305.00907 * 1 2 3
24 24 H 1.08999 * 109.47358 * 65.01455 * 1 2 3
25 25 H 1.09001 * 109.47240 * 60.00672 * 5 3 2
26 26 H 1.09004 * 109.46656 * 180.02562 * 5 3 2
27 27 H 1.00903 * 110.99737 * 303.95766 * 6 5 3
28 28 H 1.08995 * 109.46752 * 305.29588 * 7 6 5
29 29 H 1.08997 * 109.47297 * 65.29996 * 7 6 5
30 30 H 0.97003 * 120.00079 * 179.97438 * 12 11 9
31 31 H 1.08991 * 117.49926 * 0.02562 * 17 8 7
32 32 H 1.08998 * 117.49475 * 145.02279 * 17 8 7
33 33 H 1.09008 * 117.49514 * 214.98366 * 18 8 7
34 34 H 1.09001 * 117.50066 * 359.97296 * 18 8 7
35 35 H 1.08995 * 109.47657 * 294.36322 * 19 3 2
36 36 H 1.09007 * 109.47505 * 60.72050 * 20 19 3
37 37 H 1.08994 * 109.47542 * 180.72688 * 20 19 3
38 38 H 1.09007 * 109.46916 * 300.72743 * 20 19 3
39 39 H 1.08994 * 109.47215 * 179.97438 * 21 19 3
40 40 H 1.08998 * 109.47572 * 300.00418 * 21 19 3
41 41 H 1.09002 * 109.46679 * 60.00426 * 21 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.2411 2.0456 0.2209
5 6 3.1063 1.3756 1.0651
6 7 2.5248 1.0985 2.3853
7 6 3.5505 1.1580 3.4353
8 6 2.9369 0.7361 4.7720
9 6 2.4683 -0.6940 4.8495
10 1 1.4342 -0.9349 4.6515
11 6 3.3594 -1.6950 5.1731
12 7 4.6105 -1.3976 5.4489
13 14 2.7901 -3.4735 5.2197
14 1 1.3476 -3.5407 4.8734
15 1 3.5724 -4.2696 4.2403
16 1 2.9974 -4.0240 6.5833
17 6 2.1338 1.7856 5.5432
18 6 3.5164 1.3596 6.0433
19 6 2.6159 1.5941 -1.3750
20 6 1.5520 1.3865 -2.4548
21 6 3.1127 3.0405 -1.4200
22 1 -0.3633 -1.0238 0.0897
23 1 -0.3634 0.5895 0.8417
24 1 -0.3634 0.4341 -0.9315
25 1 3.8755 0.6355 0.8442
26 1 3.5494 2.3716 1.0654
27 1 1.7652 1.7316 2.5859
28 1 4.3688 0.4839 3.1823
29 1 3.9301 2.1766 3.5152
30 1 5.2375 -2.1018 5.6770
31 1 2.0423 2.7763 5.0981
32 1 1.2667 1.4414 6.1069
33 1 3.5583 0.7353 6.9360
34 1 4.3351 2.0699 5.9276
35 1 3.4514 0.9172 -1.5534
36 1 0.7222 2.0724 -2.2839
37 1 1.9869 1.5796 -3.4353
38 1 1.1887 0.3596 -2.4142
39 1 3.5447 3.2459 -2.3994
40 1 2.2773 3.7174 -1.2417
41 1 3.8708 3.1883 -0.6508
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000381152193.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:46:12
Heat of formation + Delta-G solvation = -33.749809 kcal
Electronic energy + Delta-G solvation = -18178.983517 eV
Core-core repulsion = 15480.413189 eV
Total energy + Delta-G solvation = -2698.570327 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-38.71506 -36.81626 -34.80075 -33.79035 -31.72661 -28.75005 -27.06647 -26.12646
-25.32933 -23.87245 -21.83218 -20.87797 -20.12580 -18.86501 -16.62875 -16.11928
-15.45045 -15.08309 -14.49004 -14.38407 -13.96248 -13.55413 -13.45624 -13.05592
-12.81410 -12.73246 -12.34696 -12.18446 -11.63991 -11.49326 -11.21136 -11.05614
-10.92988 -10.83542 -10.70303 -10.56725 -10.36706 -10.34848 -10.08637 -9.39023
-9.02645 -8.78442 -8.26449 -7.96261 -7.40672 -5.85798 -3.87430 3.40614
3.48322 3.53640 4.07340 4.55870 4.62928 4.89583 5.07743 5.18267
5.33278 5.44537 5.50000 5.53533 5.56654 5.65249 5.67566 5.77831
5.81702 5.84237 5.92895 5.99254 6.07993 6.20418 6.25841 6.28935
6.38717 6.42280 6.56107 6.70359 6.80658 6.97179 7.20903 7.57251
7.59154 7.65644 8.04345 8.07155 8.24860 8.65181 9.11611 9.75605
11.23905
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023147 B = 0.006520 C = 0.005716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1209.353521 B = 4293.137926 C = 4897.454299
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.361 6.361
3 C 0.100 3.900
4 H 0.055 0.945
5 C 0.054 3.946
6 N -0.660 5.660
7 C 0.109 3.891
8 C 0.051 3.949
9 C -0.462 4.462
10 H 0.058 0.942
11 C 0.065 3.935
12 N -0.889 5.889
13 Si 0.889 3.111
14 H -0.273 1.273
15 H -0.286 1.286
16 H -0.288 1.288
17 C -0.217 4.217
18 C -0.154 4.154
19 C -0.112 4.112
20 C -0.145 4.145
21 C -0.147 4.147
22 H 0.080 0.920
23 H 0.042 0.958
24 H 0.030 0.970
25 H 0.075 0.925
26 H 0.028 0.972
27 H 0.324 0.676
28 H 0.073 0.927
29 H -0.008 1.008
30 H 0.255 0.745
31 H 0.058 0.942
32 H 0.075 0.925
33 H 0.083 0.917
34 H 0.058 0.942
35 H 0.078 0.922
36 H 0.048 0.952
37 H 0.051 0.949
38 H 0.062 0.938
39 H 0.055 0.945
40 H 0.052 0.948
41 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.763 7.686 -12.330 15.290
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.279 6.279
3 C 0.041 3.959
4 H 0.073 0.927
5 C -0.076 4.076
6 N -0.289 5.289
7 C -0.019 4.019
8 C 0.050 3.950
9 C -0.501 4.501
10 H 0.077 0.923
11 C -0.136 4.136
12 N -0.528 5.528
13 Si 0.718 3.282
14 H -0.198 1.198
15 H -0.212 1.212
16 H -0.215 1.215
17 C -0.255 4.255
18 C -0.192 4.192
19 C -0.132 4.132
20 C -0.202 4.202
21 C -0.205 4.205
22 H 0.098 0.902
23 H 0.060 0.940
24 H 0.049 0.951
25 H 0.093 0.907
26 H 0.046 0.954
27 H 0.141 0.859
28 H 0.091 0.909
29 H 0.010 0.990
30 H 0.065 0.935
31 H 0.076 0.924
32 H 0.094 0.906
33 H 0.101 0.899
34 H 0.077 0.923
35 H 0.096 0.904
36 H 0.067 0.933
37 H 0.070 0.930
38 H 0.081 0.919
39 H 0.074 0.926
40 H 0.071 0.929
41 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -4.429 6.733 -12.349 14.746
hybrid contribution -0.168 0.236 0.130 0.318
sum -4.596 6.969 -12.219 14.799
Atomic orbital electron populations
1.22766 0.81985 1.02459 0.98944 1.87982 1.18695 1.26582 1.94616
1.22163 0.95119 0.85333 0.93243 0.92702 1.22217 0.96553 0.98713
0.90069 1.60165 1.11483 1.57126 1.00159 1.21529 0.93507 0.95371
0.91541 1.18845 0.96427 0.92397 0.87340 1.20325 0.95215 0.89064
1.45446 0.92335 1.24933 0.94979 0.98519 0.95154 1.70023 1.03206
1.32092 1.47436 0.86579 0.78940 0.85591 0.77102 1.19800 1.21179
1.21492 1.22983 0.95624 0.98594 1.08271 1.22493 0.92980 1.02279
1.01494 1.21521 0.99125 0.97276 0.95253 1.21816 0.98419 1.02069
0.97897 1.21872 1.01150 0.95617 1.01836 0.90182 0.93980 0.95123
0.90693 0.95370 0.85908 0.90892 0.98956 0.93488 0.92379 0.90617
0.89868 0.92341 0.90402 0.93267 0.92961 0.91900 0.92612 0.92878
0.92173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.48 10.33 101.05 1.04 1.52 16
2 O -0.36 -6.00 9.50 -35.23 -0.33 -6.34 16
3 C 0.10 1.44 2.04 -26.74 -0.05 1.39 16
4 H 0.05 0.74 7.59 -51.93 -0.39 0.34 16
5 C 0.05 0.91 5.13 -3.83 -0.02 0.89 16
6 N -0.66 -13.28 6.24 -113.78 -0.71 -13.99 16
7 C 0.11 2.49 5.51 -3.82 -0.02 2.47 16
8 C 0.05 1.27 1.60 -155.66 -0.25 1.02 16
9 C -0.46 -12.95 8.74 -34.44 -0.30 -13.25 16
10 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16
11 C 0.07 1.85 5.42 -17.82 -0.10 1.75 16
12 N -0.89 -25.95 12.72 55.43 0.71 -25.24 16
13 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16
14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16
15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
17 C -0.22 -4.83 9.96 -26.69 -0.27 -5.09 16
18 C -0.15 -3.73 9.22 -26.69 -0.25 -3.98 16
19 C -0.11 -1.34 2.69 -90.62 -0.24 -1.59 16
20 C -0.14 -1.52 8.12 37.16 0.30 -1.22 16
21 C -0.15 -1.50 8.96 37.16 0.33 -1.17 16
22 H 0.08 1.04 8.14 -51.92 -0.42 0.61 16
23 H 0.04 0.57 8.05 -51.93 -0.42 0.15 16
24 H 0.03 0.34 6.81 -51.93 -0.35 -0.01 16
25 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16
26 H 0.03 0.43 6.59 -51.93 -0.34 0.09 16
27 H 0.32 6.08 8.79 -39.29 -0.35 5.74 16
28 H 0.07 1.87 8.13 -51.93 -0.42 1.45 16
29 H -0.01 -0.16 8.09 -51.93 -0.42 -0.58 16
30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16
31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
32 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16
33 H 0.08 2.16 8.14 -51.92 -0.42 1.74 16
34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16
35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
38 H 0.06 0.71 6.78 -51.93 -0.35 0.36 16
39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
41 H 0.06 0.64 6.59 -51.93 -0.34 0.29 16
LS Contribution 330.15 15.07 4.98 4.98
Total: -1.00 -29.76 330.15 -7.79 -37.55
By element:
Atomic # 1 Polarization: 10.71 SS G_CDS: -7.58 Total: 3.13 kcal
Atomic # 6 Polarization: -17.43 SS G_CDS: 0.18 Total: -17.25 kcal
Atomic # 7 Polarization: -39.22 SS G_CDS: 0.00 Total: -39.23 kcal
Atomic # 8 Polarization: -6.00 SS G_CDS: -0.33 Total: -6.34 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal
Total LS contribution 4.98 Total: 4.98 kcal
Total: -29.76 -7.79 -37.55 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000381152193.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.802 kcal
(2) G-P(sol) polarization free energy of solvation -29.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.960 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.750 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds