Wall clock time and date at job start Mon Mar 30 2020 04:46:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42903 * 113.99965 * 2 1
4 4 H 1.09001 * 109.46681 * 12.41174 * 3 2 1
5 5 C 1.52995 * 109.46789 * 132.40844 * 3 2 1
6 6 N 1.46898 * 109.47406 * 300.00114 * 5 3 2
7 7 C 1.46903 * 110.99998 * 180.02562 * 6 5 3
8 8 C 1.53007 * 109.46767 * 185.29701 * 7 6 5
9 9 C 1.50699 * 115.54750 * 64.77695 * 8 7 6
10 10 H 1.07998 * 119.99684 * 264.87982 * 9 8 7
11 11 C 1.37871 * 120.00478 * 84.88369 * 9 8 7
12 12 N 1.31517 * 119.99676 * 1.80738 * 11 9 8
13 13 Si 1.86799 * 120.00479 * 181.80768 * 11 9 8
14 14 H 1.48500 * 109.47068 * 359.97438 * 13 11 9
15 15 H 1.48500 * 109.47360 * 120.00051 * 13 11 9
16 16 H 1.48500 * 109.47017 * 240.00192 * 13 11 9
17 17 C 1.53000 * 117.49840 * 279.10117 * 8 7 6
18 18 C 1.52999 * 117.49588 * 210.44353 * 8 7 6
19 19 C 1.52995 * 109.47176 * 252.40791 * 3 2 1
20 20 C 1.53001 * 109.47298 * 54.36520 * 19 3 2
21 21 C 1.53000 * 109.47131 * 174.35986 * 19 3 2
22 22 H 1.09007 * 109.46551 * 185.00938 * 1 2 3
23 23 H 1.08995 * 109.47349 * 305.00907 * 1 2 3
24 24 H 1.08999 * 109.47358 * 65.01455 * 1 2 3
25 25 H 1.09001 * 109.47240 * 60.00672 * 5 3 2
26 26 H 1.09004 * 109.46656 * 180.02562 * 5 3 2
27 27 H 1.00903 * 110.99737 * 303.95766 * 6 5 3
28 28 H 1.08995 * 109.46752 * 305.29588 * 7 6 5
29 29 H 1.08997 * 109.47297 * 65.29996 * 7 6 5
30 30 H 0.97003 * 120.00079 * 179.97438 * 12 11 9
31 31 H 1.08991 * 117.49926 * 0.02562 * 17 8 7
32 32 H 1.08998 * 117.49475 * 145.02279 * 17 8 7
33 33 H 1.09008 * 117.49514 * 214.98366 * 18 8 7
34 34 H 1.09001 * 117.50066 * 359.97296 * 18 8 7
35 35 H 1.08995 * 109.47657 * 294.36322 * 19 3 2
36 36 H 1.09007 * 109.47505 * 60.72050 * 20 19 3
37 37 H 1.08994 * 109.47542 * 180.72688 * 20 19 3
38 38 H 1.09007 * 109.46916 * 300.72743 * 20 19 3
39 39 H 1.08994 * 109.47215 * 179.97438 * 21 19 3
40 40 H 1.08998 * 109.47572 * 300.00418 * 21 19 3
41 41 H 1.09002 * 109.46679 * 60.00426 * 21 19 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.2411 2.0456 0.2209
5 6 3.1063 1.3756 1.0651
6 7 2.5248 1.0985 2.3853
7 6 3.5505 1.1580 3.4353
8 6 2.9369 0.7361 4.7720
9 6 2.4683 -0.6940 4.8495
10 1 1.4342 -0.9349 4.6515
11 6 3.3594 -1.6950 5.1731
12 7 4.6105 -1.3976 5.4489
13 14 2.7901 -3.4735 5.2197
14 1 1.3476 -3.5407 4.8734
15 1 3.5724 -4.2696 4.2403
16 1 2.9974 -4.0240 6.5833
17 6 2.1338 1.7856 5.5432
18 6 3.5164 1.3596 6.0433
19 6 2.6159 1.5941 -1.3750
20 6 1.5520 1.3865 -2.4548
21 6 3.1127 3.0405 -1.4200
22 1 -0.3633 -1.0238 0.0897
23 1 -0.3634 0.5895 0.8417
24 1 -0.3634 0.4341 -0.9315
25 1 3.8755 0.6355 0.8442
26 1 3.5494 2.3716 1.0654
27 1 1.7652 1.7316 2.5859
28 1 4.3688 0.4839 3.1823
29 1 3.9301 2.1766 3.5152
30 1 5.2375 -2.1018 5.6770
31 1 2.0423 2.7763 5.0981
32 1 1.2667 1.4414 6.1069
33 1 3.5583 0.7353 6.9360
34 1 4.3351 2.0699 5.9276
35 1 3.4514 0.9172 -1.5534
36 1 0.7222 2.0724 -2.2839
37 1 1.9869 1.5796 -3.4353
38 1 1.1887 0.3596 -2.4142
39 1 3.5447 3.2459 -2.3994
40 1 2.2773 3.7174 -1.2417
41 1 3.8708 3.1883 -0.6508
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000381152193.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:46:12
Heat of formation + Delta-G solvation = -52.337839 kcal
Electronic energy + Delta-G solvation = -18179.789554 eV
Core-core repulsion = 15480.413189 eV
Total energy + Delta-G solvation = -2699.376365 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.88910 -38.62391 -35.98608 -35.19168 -33.86194 -30.03256 -27.89378 -27.71665
-27.04359 -25.40308 -23.24973 -22.66254 -21.22521 -20.73644 -18.12136 -17.69600
-16.79004 -16.55566 -16.34809 -15.69437 -15.36926 -15.12104 -14.88202 -14.61407
-13.96843 -13.78204 -13.67601 -13.42405 -13.07144 -12.93562 -12.84373 -12.59316
-12.55694 -12.34113 -12.11856 -12.00561 -11.97225 -11.67233 -11.45972 -11.23551
-10.82634 -10.36314 -10.20462 -9.87625 -8.97660 -8.02236 -6.08460 1.40251
1.43467 1.53869 2.48441 2.98928 3.24462 3.28273 3.64720 3.91445
4.07969 4.15133 4.28511 4.39545 4.48728 4.54728 4.58392 4.64632
4.65796 4.74416 4.76138 4.81891 4.82882 4.93564 4.97256 5.00369
5.01453 5.07919 5.13646 5.25157 5.31159 5.42205 5.46488 5.67978
5.74604 5.89256 6.35736 6.47818 6.55554 6.78993 6.95103 7.56691
9.06791
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023147 B = 0.006520 C = 0.005716
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1209.353521 B = 4293.137926 C = 4897.454299
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.394 6.394
3 C 0.103 3.897
4 H 0.069 0.931
5 C 0.056 3.944
6 N -0.673 5.673
7 C 0.125 3.875
8 C 0.021 3.979
9 C -0.472 4.472
10 H 0.045 0.955
11 C 0.018 3.982
12 N -0.916 5.916
13 Si 0.944 3.056
14 H -0.270 1.270
15 H -0.287 1.287
16 H -0.282 1.282
17 C -0.186 4.186
18 C -0.162 4.162
19 C -0.110 4.110
20 C -0.140 4.140
21 C -0.144 4.144
22 H 0.079 0.921
23 H 0.039 0.961
24 H 0.056 0.944
25 H 0.049 0.951
26 H 0.049 0.951
27 H 0.335 0.665
28 H 0.034 0.966
29 H 0.009 0.991
30 H 0.255 0.745
31 H 0.090 0.910
32 H 0.074 0.926
33 H 0.056 0.944
34 H 0.070 0.930
35 H 0.063 0.937
36 H 0.060 0.940
37 H 0.066 0.934
38 H 0.050 0.950
39 H 0.070 0.930
40 H 0.063 0.937
41 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.910 8.996 -13.527 17.287
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.313 6.313
3 C 0.045 3.955
4 H 0.087 0.913
5 C -0.073 4.073
6 N -0.304 5.304
7 C -0.004 4.004
8 C 0.020 3.980
9 C -0.511 4.511
10 H 0.063 0.937
11 C -0.180 4.180
12 N -0.555 5.555
13 Si 0.771 3.229
14 H -0.195 1.195
15 H -0.213 1.213
16 H -0.208 1.208
17 C -0.224 4.224
18 C -0.200 4.200
19 C -0.129 4.129
20 C -0.198 4.198
21 C -0.201 4.201
22 H 0.097 0.903
23 H 0.058 0.942
24 H 0.075 0.925
25 H 0.068 0.932
26 H 0.067 0.933
27 H 0.152 0.848
28 H 0.053 0.947
29 H 0.027 0.973
30 H 0.064 0.936
31 H 0.109 0.891
32 H 0.093 0.907
33 H 0.075 0.925
34 H 0.089 0.911
35 H 0.081 0.919
36 H 0.079 0.921
37 H 0.085 0.915
38 H 0.069 0.931
39 H 0.089 0.911
40 H 0.082 0.918
41 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -5.594 8.051 -13.551 16.725
hybrid contribution 0.166 -0.155 0.495 0.545
sum -5.428 7.897 -13.055 16.195
Atomic orbital electron populations
1.22881 0.80596 1.02746 1.00185 1.87938 1.20420 1.28059 1.94850
1.22214 0.94626 0.84937 0.93721 0.91256 1.22259 0.96999 0.98919
0.89161 1.60032 1.11354 1.58186 1.00791 1.21157 0.92889 0.95077
0.91278 1.18960 0.98394 0.92012 0.88618 1.20548 0.94580 0.91072
1.44851 0.93655 1.25579 0.95180 1.01945 0.95277 1.70118 1.03976
1.32943 1.48488 0.85717 0.78483 0.81524 0.77151 1.19460 1.21339
1.20806 1.22966 0.94213 0.99071 1.06105 1.22394 0.94947 1.02493
1.00146 1.21487 0.99017 0.98201 0.94201 1.21776 0.98318 1.01664
0.98009 1.21847 1.01369 0.94349 1.02524 0.90259 0.94215 0.92540
0.93219 0.93292 0.84772 0.94736 0.97282 0.93618 0.89138 0.90708
0.92485 0.91121 0.91881 0.92086 0.91505 0.93055 0.91146 0.91776
0.92864
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.82 10.33 113.37 1.17 1.99 16
2 O -0.39 -12.82 9.50 -148.98 -1.42 -14.23 16
3 C 0.10 2.82 2.04 30.59 0.06 2.88 16
4 H 0.07 1.68 7.59 -2.39 -0.02 1.67 16
5 C 0.06 1.84 5.13 86.30 0.44 2.28 16
6 N -0.67 -26.62 6.24 -513.88 -3.21 -29.83 16
7 C 0.13 5.70 5.51 86.30 0.48 6.17 16
8 C 0.02 1.04 1.60 -52.93 -0.08 0.95 16
9 C -0.47 -26.69 8.74 25.60 0.22 -26.47 16
10 H 0.05 2.62 7.81 -2.91 -0.02 2.59 16
11 C 0.02 1.06 5.42 84.65 0.46 1.52 16
12 N -0.92 -54.44 12.72 21.45 0.27 -54.16 16
13 Si 0.94 46.10 29.54 68.60 2.03 48.13 16
14 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16
15 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16
16 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16
17 C -0.19 -7.92 9.96 30.62 0.30 -7.62 16
18 C -0.16 -7.75 9.22 30.62 0.28 -7.47 16
19 C -0.11 -2.42 2.69 -10.79 -0.03 -2.45 16
20 C -0.14 -2.60 8.12 71.98 0.58 -2.02 16
21 C -0.14 -2.54 8.96 71.98 0.64 -1.89 16
22 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16
23 H 0.04 1.01 8.05 -2.39 -0.02 0.99 16
24 H 0.06 1.13 6.81 -2.39 -0.02 1.11 16
25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
26 H 0.05 1.41 6.59 -2.38 -0.02 1.39 16
27 H 0.33 11.97 8.79 -89.69 -0.79 11.18 16
28 H 0.03 1.81 8.13 -2.39 -0.02 1.79 16
29 H 0.01 0.38 8.09 -2.39 -0.02 0.36 16
30 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16
31 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16
32 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16
33 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16
34 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16
35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
36 H 0.06 0.98 8.14 -2.38 -0.02 0.97 16
37 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16
38 H 0.05 1.07 6.78 -2.38 -0.02 1.05 16
39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
41 H 0.05 1.01 6.59 -2.39 -0.02 0.99 16
Total: -1.00 -63.97 330.15 2.40 -61.57
By element:
Atomic # 1 Polarization: 20.45 SS G_CDS: 0.19 Total: 20.64 kcal
Atomic # 6 Polarization: -36.65 SS G_CDS: 4.54 Total: -32.11 kcal
Atomic # 7 Polarization: -81.06 SS G_CDS: -2.93 Total: -83.99 kcal
Atomic # 8 Polarization: -12.82 SS G_CDS: -1.42 Total: -14.23 kcal
Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal
Total: -63.97 2.40 -61.57 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000381152193.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.230 kcal
(2) G-P(sol) polarization free energy of solvation -63.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.739 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.338 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds