Wall clock time and date at job start Mon Mar 30 2020 03:51:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52999 * 109.47277 * 2 1
4 4 C 1.53005 * 109.46981 * 119.99944 * 2 1 3
5 5 C 1.53001 * 109.47121 * 64.99712 * 4 2 1
6 6 H 1.09002 * 115.55911 * 29.29701 * 5 4 2
7 7 C 1.53000 * 117.50223 * 243.61012 * 5 4 2
8 8 C 1.52997 * 117.49889 * 174.98273 * 5 4 2
9 9 H 1.08999 * 117.49685 * 0.02562 * 8 5 4
10 10 N 1.46898 * 117.51833 * 214.97115 * 8 5 4
11 11 C 1.46908 * 110.99558 * 154.98488 * 10 8 5
12 12 C 1.53001 * 109.46747 * 180.02562 * 11 10 8
13 13 O 1.42893 * 109.47463 * 64.99793 * 12 11 10
14 14 C 1.42907 * 114.00104 * 179.97438 * 13 12 11
15 15 C 1.50700 * 109.46963 * 179.97438 * 14 13 12
16 16 H 1.08000 * 120.00182 * 0.02562 * 15 14 13
17 17 C 1.37879 * 119.99497 * 179.97438 * 15 14 13
18 18 N 1.31508 * 120.00285 * 0.02562 * 17 15 14
19 19 Si 1.86804 * 119.99747 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.46857 * 0.02562 * 19 17 15
21 21 H 1.48507 * 109.46773 * 120.00229 * 19 17 15
22 22 H 1.48493 * 109.47196 * 240.00452 * 19 17 15
23 23 H 1.08995 * 109.47261 * 299.99962 * 1 2 3
24 24 H 1.09005 * 109.46880 * 60.00181 * 1 2 3
25 25 H 1.09004 * 109.47372 * 179.97438 * 1 2 3
26 26 H 1.09003 * 109.47005 * 239.99815 * 2 1 3
27 27 H 1.08992 * 109.47132 * 180.02562 * 3 2 1
28 28 H 1.08996 * 109.46858 * 299.99957 * 3 2 1
29 29 H 1.08995 * 109.46944 * 59.99844 * 3 2 1
30 30 H 1.08996 * 109.46714 * 305.00333 * 4 2 1
31 31 H 1.08994 * 109.46846 * 185.00061 * 4 2 1
32 32 H 1.08990 * 117.49990 * 145.01974 * 7 5 4
33 33 H 1.09004 * 117.49237 * 359.97438 * 7 5 4
34 34 H 1.00900 * 111.00361 * 278.93344 * 10 8 5
35 35 H 1.09001 * 109.46566 * 299.99586 * 11 10 8
36 36 H 1.08990 * 109.47302 * 60.00078 * 11 10 8
37 37 H 1.09003 * 109.46811 * 185.00004 * 12 11 10
38 38 H 1.08998 * 109.46860 * 304.99378 * 12 11 10
39 39 H 1.09002 * 109.46928 * 299.99928 * 14 13 12
40 40 H 1.08994 * 109.46920 * 59.99864 * 14 13 12
41 41 H 0.97002 * 120.00148 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 1.6352 -2.1955 1.1881
6 1 1.5385 -2.6154 0.1868
7 6 0.6792 -2.7110 2.2657
8 6 2.1541 -3.1171 2.2936
9 1 2.7835 -2.6730 3.0648
10 7 2.4837 -4.5003 1.9250
11 6 3.4757 -5.0687 2.8477
12 6 3.7934 -6.5066 2.4322
13 8 4.4267 -6.5034 1.1512
14 6 4.7677 -7.8044 0.6682
15 6 5.4254 -7.6824 -0.6822
16 1 5.5689 -6.7087 -1.1270
17 6 5.8447 -8.8138 -1.3495
18 7 5.6704 -9.9993 -0.8077
19 14 6.6592 -8.6626 -3.0238
20 1 6.7364 -7.2306 -3.4092
21 1 8.0292 -9.2324 -2.9609
22 1 5.8602 -9.4046 -4.0317
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0277 -0.0005
26 1 1.8934 -0.5139 -0.8900
27 1 3.1300 1.4425 -0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6767 1.9563 0.8899
30 1 1.6053 -0.2617 2.1369
31 1 3.1263 -0.6443 1.2952
32 1 -0.0464 -3.4700 1.9734
33 1 0.3390 -1.9998 3.0185
34 1 1.6536 -5.0727 1.8893
35 1 4.3869 -4.4715 2.8143
36 1 3.0744 -5.0632 3.8610
37 1 4.4608 -6.9578 3.1664
38 1 2.8692 -7.0821 2.3792
39 1 5.4556 -8.2822 1.3659
40 1 3.8640 -8.4072 0.5788
41 1 5.9657 -10.7952 -1.2769
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385270232.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:07
Heat of formation + Delta-G solvation = -49.128233 kcal
Electronic energy + Delta-G solvation = -16927.843546 eV
Core-core repulsion = 14228.606360 eV
Total energy + Delta-G solvation = -2699.237186 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-38.66303 -36.88070 -35.70815 -33.39668 -32.44841 -28.52271 -27.28201 -27.16757
-26.22435 -22.27389 -21.69587 -21.54910 -20.62050 -20.03180 -16.38441 -15.91464
-15.79795 -15.33250 -14.98639 -14.56988 -14.34472 -13.97475 -13.55627 -13.25994
-13.16953 -12.65183 -12.53471 -12.29807 -11.90941 -11.72003 -11.57785 -11.32008
-11.22969 -10.97630 -10.76677 -10.75960 -10.73427 -10.46805 -10.33464 -10.01379
-9.74422 -9.02119 -8.76281 -8.10094 -7.93548 -6.05774 -4.06463 3.33076
3.39248 3.46811 3.81449 4.12944 4.40171 4.69006 4.78825 4.83963
4.92225 4.97326 5.06847 5.25262 5.30825 5.44206 5.49727 5.53306
5.59299 5.62299 5.63996 5.70523 5.72667 5.79598 5.88440 5.94893
6.03742 6.09579 6.12426 6.18714 6.25018 6.33300 6.41582 7.15454
7.26344 7.48936 7.56191 7.86774 8.22478 8.67252 9.08827 9.58330
11.06029
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.022549 B = 0.003965 C = 0.003513
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1241.463415 B = 7060.617800 C = 7969.554054
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.096 4.096
3 C -0.148 4.148
4 C -0.082 4.082
5 C -0.137 4.137
6 H 0.108 0.892
7 C -0.207 4.207
8 C 0.030 3.970
9 H 0.104 0.896
10 N -0.645 5.645
11 C 0.067 3.933
12 C 0.064 3.936
13 O -0.380 6.380
14 C 0.193 3.807
15 C -0.509 4.509
16 H 0.067 0.933
17 C 0.054 3.946
18 N -0.901 5.901
19 Si 0.907 3.093
20 H -0.270 1.270
21 H -0.283 1.283
22 H -0.283 1.283
23 H 0.050 0.950
24 H 0.049 0.951
25 H 0.058 0.942
26 H 0.072 0.928
27 H 0.054 0.946
28 H 0.052 0.948
29 H 0.051 0.949
30 H 0.059 0.941
31 H 0.066 0.934
32 H 0.092 0.908
33 H 0.089 0.911
34 H 0.341 0.659
35 H 0.079 0.921
36 H 0.035 0.965
37 H 0.041 0.959
38 H 0.034 0.966
39 H 0.002 0.998
40 H 0.003 0.997
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.021 17.837 6.847 21.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.114 4.114
3 C -0.205 4.205
4 C -0.120 4.120
5 C -0.157 4.157
6 H 0.126 0.874
7 C -0.245 4.245
8 C -0.081 4.081
9 H 0.122 0.878
10 N -0.275 5.275
11 C -0.062 4.062
12 C -0.014 4.014
13 O -0.300 6.300
14 C 0.119 3.881
15 C -0.548 4.548
16 H 0.086 0.914
17 C -0.146 4.146
18 N -0.541 5.541
19 Si 0.734 3.266
20 H -0.194 1.194
21 H -0.209 1.209
22 H -0.209 1.209
23 H 0.069 0.931
24 H 0.068 0.932
25 H 0.078 0.922
26 H 0.090 0.910
27 H 0.073 0.927
28 H 0.071 0.929
29 H 0.070 0.930
30 H 0.078 0.922
31 H 0.084 0.916
32 H 0.110 0.890
33 H 0.108 0.892
34 H 0.160 0.840
35 H 0.097 0.903
36 H 0.053 0.947
37 H 0.059 0.941
38 H 0.052 0.948
39 H 0.020 0.980
40 H 0.021 0.979
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -9.458 17.966 6.243 21.241
hybrid contribution -0.236 -0.596 0.104 0.650
sum -9.694 17.370 6.347 20.880
Atomic orbital electron populations
1.21829 0.95334 1.01985 1.01045 1.21118 0.95884 0.95790 0.98619
1.21846 1.01028 0.96205 1.01428 1.21220 1.00690 0.92528 0.97523
1.22576 1.02718 0.94374 0.95983 0.87359 1.23608 0.93751 1.04417
1.02773 1.22525 0.94777 0.91073 0.99742 0.87797 1.60048 1.15247
1.00648 1.51533 1.22025 0.96008 0.95900 0.92255 1.22239 0.96222
0.94475 0.88479 1.87964 1.78526 1.32068 1.31421 1.20194 0.94256
0.79326 0.94368 1.21118 1.38001 0.93691 1.01951 0.91432 1.24954
0.96176 0.94893 0.98610 1.69975 1.47653 0.97714 1.38715 0.86291
0.78820 0.78372 0.83091 1.19434 1.20907 1.20885 0.93118 0.93226
0.92249 0.90952 0.92683 0.92871 0.92963 0.92228 0.91561 0.89002
0.89213 0.83971 0.90283 0.94666 0.94084 0.94797 0.97983 0.97907
0.92808
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.25 9.01 37.16 0.33 -0.91 16
2 C -0.10 -0.89 2.88 -90.62 -0.26 -1.15 16
3 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16
4 C -0.08 -0.81 4.96 -26.73 -0.13 -0.95 16
5 C -0.14 -1.59 4.65 -90.62 -0.42 -2.01 16
6 H 0.11 1.44 8.07 -51.93 -0.42 1.02 16
7 C -0.21 -2.14 9.88 -26.73 -0.26 -2.40 16
8 C 0.03 0.37 6.03 -67.71 -0.41 -0.04 16
9 H 0.10 1.21 7.90 -51.93 -0.41 0.80 16
10 N -0.64 -9.85 6.73 -106.72 -0.72 -10.57 16
11 C 0.07 1.03 5.92 -3.82 -0.02 1.00 16
12 C 0.06 1.21 6.22 37.16 0.23 1.44 16
13 O -0.38 -9.53 10.27 -35.23 -0.36 -9.89 16
14 C 0.19 5.46 5.69 36.01 0.20 5.66 16
15 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16
16 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16
17 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16
18 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16
19 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16
20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16
25 H 0.06 0.54 7.38 -51.93 -0.38 0.16 16
26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16
31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16
33 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16
34 H 0.34 4.90 8.52 -39.29 -0.33 4.56 16
35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16
36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16
37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16
38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16
39 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16
40 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16
41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
LS Contribution 338.31 15.07 5.10 5.10
Total: -1.00 -31.76 338.31 -8.92 -40.69
By element:
Atomic # 1 Polarization: 6.43 SS G_CDS: -7.83 Total: -1.40 kcal
Atomic # 6 Polarization: -13.65 SS G_CDS: -0.82 Total: -14.47 kcal
Atomic # 7 Polarization: -37.34 SS G_CDS: 0.02 Total: -37.32 kcal
Atomic # 8 Polarization: -9.53 SS G_CDS: -0.36 Total: -9.89 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -31.76 -8.92 -40.69 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385270232.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.443 kcal
(2) G-P(sol) polarization free energy of solvation -31.765 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.128 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds