Wall clock time and date at job start Mon Mar 30 2020 03:51:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52999 * 109.47277 * 2 1
4 4 C 1.53005 * 109.46981 * 119.99944 * 2 1 3
5 5 C 1.53001 * 109.47121 * 64.99712 * 4 2 1
6 6 H 1.09002 * 115.55911 * 29.29701 * 5 4 2
7 7 C 1.53000 * 117.50223 * 243.61012 * 5 4 2
8 8 C 1.52997 * 117.49889 * 174.98273 * 5 4 2
9 9 H 1.08999 * 117.49685 * 0.02562 * 8 5 4
10 10 N 1.46898 * 117.51833 * 214.97115 * 8 5 4
11 11 C 1.46908 * 110.99558 * 154.98488 * 10 8 5
12 12 C 1.53001 * 109.46747 * 180.02562 * 11 10 8
13 13 O 1.42893 * 109.47463 * 64.99793 * 12 11 10
14 14 C 1.42907 * 114.00104 * 179.97438 * 13 12 11
15 15 C 1.50700 * 109.46963 * 179.97438 * 14 13 12
16 16 H 1.08000 * 120.00182 * 0.02562 * 15 14 13
17 17 C 1.37879 * 119.99497 * 179.97438 * 15 14 13
18 18 N 1.31508 * 120.00285 * 0.02562 * 17 15 14
19 19 Si 1.86804 * 119.99747 * 179.97438 * 17 15 14
20 20 H 1.48497 * 109.46857 * 0.02562 * 19 17 15
21 21 H 1.48507 * 109.46773 * 120.00229 * 19 17 15
22 22 H 1.48493 * 109.47196 * 240.00452 * 19 17 15
23 23 H 1.08995 * 109.47261 * 299.99962 * 1 2 3
24 24 H 1.09005 * 109.46880 * 60.00181 * 1 2 3
25 25 H 1.09004 * 109.47372 * 179.97438 * 1 2 3
26 26 H 1.09003 * 109.47005 * 239.99815 * 2 1 3
27 27 H 1.08992 * 109.47132 * 180.02562 * 3 2 1
28 28 H 1.08996 * 109.46858 * 299.99957 * 3 2 1
29 29 H 1.08995 * 109.46944 * 59.99844 * 3 2 1
30 30 H 1.08996 * 109.46714 * 305.00333 * 4 2 1
31 31 H 1.08994 * 109.46846 * 185.00061 * 4 2 1
32 32 H 1.08990 * 117.49990 * 145.01974 * 7 5 4
33 33 H 1.09004 * 117.49237 * 359.97438 * 7 5 4
34 34 H 1.00900 * 111.00361 * 278.93344 * 10 8 5
35 35 H 1.09001 * 109.46566 * 299.99586 * 11 10 8
36 36 H 1.08990 * 109.47302 * 60.00078 * 11 10 8
37 37 H 1.09003 * 109.46811 * 185.00004 * 12 11 10
38 38 H 1.08998 * 109.46860 * 304.99378 * 12 11 10
39 39 H 1.09002 * 109.46928 * 299.99928 * 14 13 12
40 40 H 1.08994 * 109.46920 * 59.99864 * 14 13 12
41 41 H 0.97002 * 120.00148 * 180.02562 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2493
5 6 1.6352 -2.1955 1.1881
6 1 1.5385 -2.6154 0.1868
7 6 0.6792 -2.7110 2.2657
8 6 2.1541 -3.1171 2.2936
9 1 2.7835 -2.6730 3.0648
10 7 2.4837 -4.5003 1.9250
11 6 3.4757 -5.0687 2.8477
12 6 3.7934 -6.5066 2.4322
13 8 4.4267 -6.5034 1.1512
14 6 4.7677 -7.8044 0.6682
15 6 5.4254 -7.6824 -0.6822
16 1 5.5689 -6.7087 -1.1270
17 6 5.8447 -8.8138 -1.3495
18 7 5.6704 -9.9993 -0.8077
19 14 6.6592 -8.6626 -3.0238
20 1 6.7364 -7.2306 -3.4092
21 1 8.0292 -9.2324 -2.9609
22 1 5.8602 -9.4046 -4.0317
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 -1.0277 -0.0005
26 1 1.8934 -0.5139 -0.8900
27 1 3.1300 1.4425 -0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6767 1.9563 0.8899
30 1 1.6053 -0.2617 2.1369
31 1 3.1263 -0.6443 1.2952
32 1 -0.0464 -3.4700 1.9734
33 1 0.3390 -1.9998 3.0185
34 1 1.6536 -5.0727 1.8893
35 1 4.3869 -4.4715 2.8143
36 1 3.0744 -5.0632 3.8610
37 1 4.4608 -6.9578 3.1664
38 1 2.8692 -7.0821 2.3792
39 1 5.4556 -8.2822 1.3659
40 1 3.8640 -8.4072 0.5788
41 1 5.9657 -10.7952 -1.2769
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385270232.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:07
Heat of formation + Delta-G solvation = -69.275513 kcal
Electronic energy + Delta-G solvation = -16928.717197 eV
Core-core repulsion = 14228.606360 eV
Total energy + Delta-G solvation = -2700.110837 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-39.63203 -38.57878 -36.71176 -35.07068 -34.19802 -30.12812 -28.65452 -27.94950
-27.56185 -24.49054 -22.95720 -22.59097 -21.51933 -20.82788 -18.63501 -17.54371
-17.10114 -16.64962 -16.18510 -16.05768 -15.78793 -14.97916 -14.94005 -14.61500
-14.28777 -13.93171 -13.72372 -13.35684 -13.04573 -12.98970 -12.84503 -12.71188
-12.60747 -12.34750 -12.30400 -12.09970 -11.88660 -11.68584 -11.47918 -11.27587
-11.18269 -10.87942 -10.70068 -10.19808 -9.01379 -8.32267 -6.44190 1.39503
1.41201 1.56309 2.35395 2.87744 3.01253 3.11551 3.23938 3.87438
3.97894 4.04961 4.16126 4.20381 4.23569 4.29734 4.40547 4.52867
4.66837 4.68037 4.75511 4.83017 4.85192 4.88132 4.92742 4.96634
4.98661 5.04196 5.11895 5.18971 5.22457 5.36519 5.46177 5.50057
5.55732 5.57716 5.97372 6.17781 6.43651 6.57570 6.86365 7.28203
8.80390
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.022549 B = 0.003965 C = 0.003513
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1241.463415 B = 7060.617800 C = 7969.554054
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.097 4.097
3 C -0.145 4.145
4 C -0.076 4.076
5 C -0.143 4.143
6 H 0.084 0.916
7 C -0.182 4.182
8 C 0.016 3.984
9 H 0.114 0.886
10 N -0.671 5.671
11 C 0.078 3.922
12 C 0.053 3.947
13 O -0.398 6.398
14 C 0.208 3.792
15 C -0.547 4.547
16 H 0.058 0.942
17 C 0.006 3.994
18 N -0.931 5.931
19 Si 0.984 3.016
20 H -0.266 1.266
21 H -0.269 1.269
22 H -0.270 1.270
23 H 0.060 0.940
24 H 0.053 0.947
25 H 0.049 0.951
26 H 0.055 0.945
27 H 0.051 0.949
28 H 0.057 0.943
29 H 0.061 0.939
30 H 0.075 0.925
31 H 0.057 0.943
32 H 0.092 0.908
33 H 0.111 0.889
34 H 0.342 0.658
35 H 0.071 0.929
36 H 0.072 0.928
37 H 0.050 0.950
38 H 0.040 0.960
39 H -0.015 1.015
40 H -0.017 1.017
41 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.370 19.087 6.925 22.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.116 4.116
3 C -0.203 4.203
4 C -0.114 4.114
5 C -0.163 4.163
6 H 0.102 0.898
7 C -0.221 4.221
8 C -0.095 4.095
9 H 0.132 0.868
10 N -0.302 5.302
11 C -0.050 4.050
12 C -0.024 4.024
13 O -0.318 6.318
14 C 0.133 3.867
15 C -0.584 4.584
16 H 0.077 0.923
17 C -0.193 4.193
18 N -0.571 5.571
19 Si 0.806 3.194
20 H -0.190 1.190
21 H -0.194 1.194
22 H -0.195 1.195
23 H 0.079 0.921
24 H 0.073 0.927
25 H 0.069 0.931
26 H 0.073 0.927
27 H 0.070 0.930
28 H 0.076 0.924
29 H 0.080 0.920
30 H 0.093 0.907
31 H 0.076 0.924
32 H 0.110 0.890
33 H 0.129 0.871
34 H 0.162 0.838
35 H 0.090 0.910
36 H 0.090 0.910
37 H 0.069 0.931
38 H 0.058 0.942
39 H 0.003 0.997
40 H 0.001 0.999
41 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -9.821 19.228 6.345 22.503
hybrid contribution -0.181 -0.990 0.148 1.017
sum -10.002 18.238 6.493 21.790
Atomic orbital electron populations
1.21796 0.94643 1.01622 1.01802 1.21113 0.96478 0.96347 0.97624
1.21822 1.00856 0.95383 1.02190 1.21189 1.00257 0.91496 0.98441
1.22555 1.03646 0.95159 0.94933 0.89770 1.23613 0.92398 1.04067
1.02031 1.22596 0.96652 0.89665 1.00566 0.86805 1.60003 1.15573
1.02163 1.52437 1.21911 0.96136 0.93064 0.93934 1.22621 0.96159
0.97586 0.86043 1.87917 1.79222 1.30134 1.34535 1.19809 0.92748
0.80440 0.93713 1.21417 1.39790 0.93851 1.03359 0.92345 1.25966
0.96159 0.94164 1.02966 1.70071 1.47814 0.98595 1.40585 0.85132
0.78138 0.78652 0.77449 1.19028 1.19446 1.19533 0.92087 0.92749
0.93143 0.92670 0.92972 0.92357 0.91955 0.90684 0.92387 0.88991
0.87101 0.83801 0.91008 0.90992 0.93137 0.94214 0.99722 0.99880
0.92027
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.24 9.01 71.98 0.65 -1.59 16
2 C -0.10 -1.72 2.88 -10.79 -0.03 -1.75 16
3 C -0.15 -2.16 9.19 71.98 0.66 -1.50 16
4 C -0.08 -1.42 4.96 30.60 0.15 -1.27 16
5 C -0.14 -3.22 4.65 -10.79 -0.05 -3.27 16
6 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16
7 C -0.18 -3.42 9.88 30.60 0.30 -3.12 16
8 C 0.02 0.37 6.03 44.92 0.27 0.64 16
9 H 0.11 2.44 7.90 -2.39 -0.02 2.42 16
10 N -0.67 -20.18 6.73 -491.56 -3.31 -23.49 16
11 C 0.08 2.32 5.92 86.30 0.51 2.83 16
12 C 0.05 2.02 6.22 71.98 0.45 2.47 16
13 O -0.40 -20.46 10.27 -148.98 -1.53 -21.99 16
14 C 0.21 12.16 5.69 71.24 0.41 12.57 16
15 C -0.55 -33.87 9.43 25.60 0.24 -33.63 16
16 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16
17 C 0.01 0.34 5.46 84.66 0.46 0.80 16
18 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16
19 Si 0.98 45.62 29.54 68.60 2.03 47.64 16
20 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16
21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16
23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
24 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16
25 H 0.05 0.88 7.38 -2.39 -0.02 0.86 16
26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16
27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
30 H 0.07 1.17 7.87 -2.39 -0.02 1.15 16
31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
32 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16
33 H 0.11 1.65 8.03 -2.38 -0.02 1.63 16
34 H 0.34 9.73 8.52 -89.69 -0.76 8.96 16
35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16
36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16
38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
39 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16
40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16
41 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16
Total: -1.00 -68.49 338.31 1.69 -66.80
By element:
Atomic # 1 Polarization: 14.53 SS G_CDS: 0.20 Total: 14.72 kcal
Atomic # 6 Polarization: -30.85 SS G_CDS: 4.02 Total: -26.83 kcal
Atomic # 7 Polarization: -77.33 SS G_CDS: -3.02 Total: -80.35 kcal
Atomic # 8 Polarization: -20.46 SS G_CDS: -1.53 Total: -21.99 kcal
Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal
Total: -68.49 1.69 -66.80 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385270232.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.478 kcal
(2) G-P(sol) polarization free energy of solvation -68.490 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.968 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.797 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.276 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds