Wall clock time and date at job start Mon Mar 30 2020 03:19:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 120.00005 * 2 1
4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1
5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1
7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7
12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9
13 13 N 1.46897 * 109.47161 * 180.02562 * 12 11 10
14 14 C 1.48536 * 111.00392 * 52.59345 * 13 12 11
15 15 C 1.54936 * 103.22515 * 159.72385 * 14 13 12
16 16 C 1.54601 * 102.92584 * 322.59170 * 15 14 13
17 17 H 1.09004 * 110.30380 * 263.04465 * 16 15 14
18 18 C 1.52994 * 110.39682 * 140.91838 * 16 15 14
19 19 C 1.52996 * 109.47312 * 69.23299 * 18 16 15
20 20 O 1.42895 * 109.47124 * 180.02562 * 19 18 16
21 21 C 1.47902 * 111.00182 * 169.99767 * 13 12 11
22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3
23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2
24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2
25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7
26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7
27 27 H 1.09001 * 109.47194 * 299.99650 * 11 10 9
28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9
29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10
30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10
31 31 H 1.08993 * 110.66687 * 278.16191 * 14 13 12
32 32 H 1.09001 * 110.66177 * 41.29691 * 14 13 12
33 33 H 1.09000 * 110.72635 * 204.23126 * 15 14 13
34 34 H 1.09003 * 110.87603 * 81.01727 * 15 14 13
35 35 H 1.09004 * 109.47207 * 189.23575 * 18 16 15
36 36 H 1.09004 * 109.46757 * 309.23491 * 18 16 15
37 37 H 1.09004 * 109.47211 * 300.00275 * 19 18 16
38 38 H 1.08995 * 109.47275 * 60.00328 * 19 18 16
39 39 H 0.96700 * 114.00271 * 179.97438 * 20 19 18
40 40 H 1.08999 * 109.91610 * 333.50445 * 21 13 12
41 41 H 1.09001 * 109.91634 * 94.79983 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4800 -4.9871 -0.0001
12 6 2.4743 -6.1501 0.0005
13 7 1.7397 -7.4222 -0.0007
14 6 0.7452 -7.4617 -1.1033
15 6 0.4737 -8.9766 -1.2816
16 6 1.8666 -9.6069 -1.0524
17 1 2.3594 -9.7928 -2.0068
18 6 1.7387 -10.9090 -0.2593
19 6 1.0660 -11.9723 -1.1297
20 8 0.9460 -13.1883 -0.3887
21 6 2.6525 -8.5611 -0.2400
22 1 -0.4850 0.8401 -0.0004
23 1 0.6246 -2.5571 -0.8897
24 1 0.6240 -2.5566 0.8902
25 1 2.8718 -3.6044 0.8905
26 1 2.8718 -3.6044 -0.8895
27 1 0.8531 -5.0451 0.8897
28 1 0.8537 -5.0446 -0.8902
29 1 3.1015 -6.0923 -0.8891
30 1 3.1004 -6.0924 0.8909
31 1 -0.1671 -6.9383 -0.8173
32 1 1.1646 -7.0361 -2.0149
33 1 0.1156 -9.1883 -2.2891
34 1 -0.2384 -9.3338 -0.5377
35 1 2.7299 -11.2541 0.0349
36 1 1.1356 -10.7339 0.6316
37 1 0.0748 -11.6272 -1.4239
38 1 1.6690 -12.1474 -2.0206
39 1 0.5269 -13.9083 -0.8795
40 1 3.5219 -8.2275 -0.8065
41 1 2.9680 -8.9903 0.7111
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385293267.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:08
Heat of formation + Delta-G solvation = -80.013581 kcal
Electronic energy + Delta-G solvation = -17035.220683 eV
Core-core repulsion = 14334.644208 eV
Total energy + Delta-G solvation = -2700.576475 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.42988 -37.25501 -35.23345 -33.47810 -31.96800 -30.05741 -28.71744 -27.07441
-24.45098 -22.92245 -22.24407 -20.50459 -20.29565 -19.72843 -17.63607 -16.27846
-16.04248 -15.60757 -15.41163 -14.76959 -14.43641 -14.18551 -13.89804 -13.34924
-12.97037 -12.67169 -12.31717 -12.13022 -11.81439 -11.67465 -11.40677 -11.29342
-10.96526 -10.92827 -10.89463 -10.75341 -10.51650 -10.44496 -10.33219 -10.24422
-9.59729 -9.23420 -8.99284 -8.32756 -8.30099 -5.95999 -3.98207 3.35320
3.39423 3.42084 3.82305 4.07122 4.43779 4.49107 4.55323 4.75182
4.93229 4.97928 5.15587 5.24544 5.29685 5.39184 5.42610 5.47728
5.50500 5.59861 5.72758 5.79329 5.85209 5.92304 5.97905 6.01202
6.13010 6.17086 6.30759 6.51822 6.83746 6.97922 6.99191 7.11172
7.26579 7.28061 7.72682 7.88983 8.05134 8.48019 9.09091 9.65437
11.15368
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.082305 B = 0.003035 C = 0.002973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 340.118282 B = 9224.769181 C = 9415.010480
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.055 3.945
3 Si 0.892 3.108
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.520 4.520
8 H 0.053 0.947
9 C 0.022 3.978
10 C -0.109 4.109
11 C -0.117 4.117
12 C 0.047 3.953
13 N -0.518 5.518
14 C 0.034 3.966
15 C -0.122 4.122
16 C -0.096 4.096
17 H 0.074 0.926
18 C -0.109 4.109
19 C 0.075 3.925
20 O -0.577 6.577
21 C 0.040 3.960
22 H 0.260 0.740
23 H 0.014 0.986
24 H 0.016 0.984
25 H 0.047 0.953
26 H 0.044 0.956
27 H 0.064 0.936
28 H 0.056 0.944
29 H 0.031 0.969
30 H 0.073 0.927
31 H 0.086 0.914
32 H 0.045 0.955
33 H 0.068 0.932
34 H 0.076 0.924
35 H 0.068 0.932
36 H 0.075 0.925
37 H 0.047 0.953
38 H 0.043 0.957
39 H 0.378 0.622
40 H 0.044 0.956
41 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.147 -23.098 -3.931 23.528
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.145 4.145
3 Si 0.720 3.280
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.559 4.559
8 H 0.072 0.928
9 C -0.015 4.015
10 C -0.147 4.147
11 C -0.155 4.155
12 C -0.080 4.080
13 N -0.242 5.242
14 C -0.093 4.093
15 C -0.160 4.160
16 C -0.115 4.115
17 H 0.092 0.908
18 C -0.146 4.146
19 C -0.003 4.003
20 O -0.382 6.382
21 C -0.088 4.088
22 H 0.070 0.930
23 H 0.032 0.968
24 H 0.034 0.966
25 H 0.066 0.934
26 H 0.063 0.937
27 H 0.083 0.917
28 H 0.075 0.925
29 H 0.050 0.950
30 H 0.092 0.908
31 H 0.104 0.896
32 H 0.063 0.937
33 H 0.087 0.913
34 H 0.095 0.905
35 H 0.087 0.913
36 H 0.094 0.906
37 H 0.065 0.935
38 H 0.061 0.939
39 H 0.225 0.775
40 H 0.062 0.938
41 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 2.047 -22.638 -2.955 22.922
hybrid contribution 0.638 0.798 -1.302 1.655
sum 2.684 -21.841 -4.257 22.413
Atomic orbital electron populations
1.69962 1.06045 1.26620 1.50979 1.25037 0.94854 0.99224 0.95434
0.86664 0.79582 0.83201 0.78585 1.20303 1.21301 1.20244 1.21255
0.92976 0.91233 1.50404 0.92836 1.19081 0.94016 0.91329 0.97116
1.21597 0.99083 0.93974 1.00058 1.21721 0.97912 0.93849 1.02007
1.22427 0.96302 0.88814 1.00499 1.64832 1.13699 1.02728 1.42923
1.23231 0.97187 0.95883 0.93046 1.22639 0.96468 0.95267 1.01588
1.21956 0.96727 0.94287 0.98578 0.90779 1.21574 1.01499 0.92671
0.98895 1.22241 0.99325 0.84800 0.93929 1.86481 1.84304 1.22811
1.44616 1.22927 0.94647 0.91687 0.99587 0.92999 0.96795 0.96606
0.93413 0.93740 0.91683 0.92546 0.95044 0.90847 0.89602 0.93651
0.91312 0.90547 0.91280 0.90604 0.93467 0.93899 0.77536 0.93785
0.90306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16
4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16
8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16
9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16
10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16
11 C -0.12 -2.07 4.87 -26.73 -0.13 -2.20 16
12 C 0.05 0.71 5.03 -3.83 -0.02 0.69 16
13 N -0.52 -6.99 5.40 -230.45 -1.24 -8.23 16
14 C 0.03 0.42 5.10 -1.90 -0.01 0.41 16
15 C -0.12 -1.17 5.88 -24.87 -0.15 -1.32 16
16 C -0.10 -0.88 2.99 -89.26 -0.27 -1.15 16
17 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
18 C -0.11 -0.96 4.74 -26.74 -0.13 -1.09 16
19 C 0.07 0.57 6.92 37.16 0.26 0.83 16
20 O -0.58 -4.92 13.66 -35.23 -0.48 -5.40 16
21 C 0.04 0.44 6.36 -2.75 -0.02 0.42 16
22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16
23 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16
24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
25 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16
27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
28 H 0.06 0.99 6.79 -51.93 -0.35 0.64 16
29 H 0.03 0.46 7.81 -51.93 -0.41 0.05 16
30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16
31 H 0.09 1.11 7.66 -51.93 -0.40 0.71 16
32 H 0.05 0.57 8.00 -51.93 -0.42 0.15 16
33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.08 0.75 7.77 -51.93 -0.40 0.35 16
35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
36 H 0.08 0.77 8.00 -51.93 -0.42 0.35 16
37 H 0.05 0.33 7.58 -51.93 -0.39 -0.06 16
38 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
39 H 0.38 1.45 9.12 45.56 0.42 1.86 16
40 H 0.04 0.48 7.57 -51.93 -0.39 0.09 16
41 H 0.08 0.86 7.68 -51.93 -0.40 0.46 16
LS Contribution 325.24 15.07 4.90 4.90
Total: -1.00 -32.10 325.24 -9.18 -41.28
By element:
Atomic # 1 Polarization: 3.47 SS G_CDS: -6.93 Total: -3.46 kcal
Atomic # 6 Polarization: -18.18 SS G_CDS: -1.15 Total: -19.33 kcal
Atomic # 7 Polarization: -34.51 SS G_CDS: -0.51 Total: -35.01 kcal
Atomic # 8 Polarization: -4.92 SS G_CDS: -0.48 Total: -5.40 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 4.90 Total: 4.90 kcal
Total: -32.10 -9.18 -41.28 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385293267.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.729 kcal
(2) G-P(sol) polarization free energy of solvation -32.100 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.014 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds