Wall clock time and date at job start Mon Mar 30 2020 03:19:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 120.00005 * 2 1
4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1
5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1
7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2
11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7
12 12 C 1.53001 * 109.46886 * 180.02562 * 11 10 9
13 13 N 1.46897 * 109.47161 * 180.02562 * 12 11 10
14 14 C 1.48536 * 111.00392 * 52.59345 * 13 12 11
15 15 C 1.54936 * 103.22515 * 159.72385 * 14 13 12
16 16 C 1.54601 * 102.92584 * 322.59170 * 15 14 13
17 17 H 1.09004 * 110.30380 * 263.04465 * 16 15 14
18 18 C 1.52994 * 110.39682 * 140.91838 * 16 15 14
19 19 C 1.52996 * 109.47312 * 69.23299 * 18 16 15
20 20 O 1.42895 * 109.47124 * 180.02562 * 19 18 16
21 21 C 1.47902 * 111.00182 * 169.99767 * 13 12 11
22 22 H 0.97002 * 119.99731 * 0.02562 * 1 2 3
23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2
24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2
25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7
26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7
27 27 H 1.09001 * 109.47194 * 299.99650 * 11 10 9
28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9
29 29 H 1.09001 * 109.47109 * 299.99380 * 12 11 10
30 30 H 1.09002 * 109.47508 * 59.99571 * 12 11 10
31 31 H 1.08993 * 110.66687 * 278.16191 * 14 13 12
32 32 H 1.09001 * 110.66177 * 41.29691 * 14 13 12
33 33 H 1.09000 * 110.72635 * 204.23126 * 15 14 13
34 34 H 1.09003 * 110.87603 * 81.01727 * 15 14 13
35 35 H 1.09004 * 109.47207 * 189.23575 * 18 16 15
36 36 H 1.09004 * 109.46757 * 309.23491 * 18 16 15
37 37 H 1.09004 * 109.47211 * 300.00275 * 19 18 16
38 38 H 1.08995 * 109.47275 * 60.00328 * 19 18 16
39 39 H 0.96700 * 114.00271 * 179.97438 * 20 19 18
40 40 H 1.08999 * 109.91610 * 333.50445 * 21 13 12
41 41 H 1.09001 * 109.91634 * 94.79983 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4800 -4.9871 -0.0001
12 6 2.4743 -6.1501 0.0005
13 7 1.7397 -7.4222 -0.0007
14 6 0.7452 -7.4617 -1.1033
15 6 0.4737 -8.9766 -1.2816
16 6 1.8666 -9.6069 -1.0524
17 1 2.3594 -9.7928 -2.0068
18 6 1.7387 -10.9090 -0.2593
19 6 1.0660 -11.9723 -1.1297
20 8 0.9460 -13.1883 -0.3887
21 6 2.6525 -8.5611 -0.2400
22 1 -0.4850 0.8401 -0.0004
23 1 0.6246 -2.5571 -0.8897
24 1 0.6240 -2.5566 0.8902
25 1 2.8718 -3.6044 0.8905
26 1 2.8718 -3.6044 -0.8895
27 1 0.8531 -5.0451 0.8897
28 1 0.8537 -5.0446 -0.8902
29 1 3.1015 -6.0923 -0.8891
30 1 3.1004 -6.0924 0.8909
31 1 -0.1671 -6.9383 -0.8173
32 1 1.1646 -7.0361 -2.0149
33 1 0.1156 -9.1883 -2.2891
34 1 -0.2384 -9.3338 -0.5377
35 1 2.7299 -11.2541 0.0349
36 1 1.1356 -10.7339 0.6316
37 1 0.0748 -11.6272 -1.4239
38 1 1.6690 -12.1474 -2.0206
39 1 0.5269 -13.9083 -0.8795
40 1 3.5219 -8.2275 -0.8065
41 1 2.9680 -8.9903 0.7111
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385293267.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:07
Heat of formation + Delta-G solvation = -102.675648 kcal
Electronic energy + Delta-G solvation = -17036.203384 eV
Core-core repulsion = 14334.644208 eV
Total energy + Delta-G solvation = -2701.559176 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.34479 -37.94032 -36.69958 -35.07199 -33.59283 -31.15252 -30.00656 -28.29912
-26.13394 -23.81535 -23.49372 -22.03212 -21.36222 -20.84513 -18.43283 -18.23088
-17.01331 -16.71604 -16.50126 -16.21100 -15.93714 -15.04068 -14.87481 -14.54519
-14.34649 -13.94823 -13.81067 -13.56586 -13.04151 -12.86847 -12.71872 -12.66428
-12.37062 -12.29253 -12.16401 -11.97505 -11.74730 -11.62254 -11.49820 -11.35503
-11.29852 -10.98316 -10.82408 -10.55770 -9.35457 -8.20504 -6.32276 1.38949
1.42589 1.50592 2.40443 3.04883 3.12006 3.27038 3.64350 3.74551
4.01665 4.09231 4.21477 4.27648 4.35218 4.37898 4.51069 4.53913
4.56812 4.62749 4.73784 4.77963 4.83754 4.86615 4.96895 4.98912
5.08193 5.15220 5.22799 5.24654 5.26308 5.32350 5.39193 5.53126
5.75832 5.85319 5.99233 6.10650 6.24924 6.84938 6.92224 7.37004
8.91301
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.082305 B = 0.003035 C = 0.002973
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 340.118282 B = 9224.769181 C = 9415.010480
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.003 4.003
3 Si 0.967 3.033
4 H -0.266 1.266
5 H -0.282 1.282
6 H -0.266 1.266
7 C -0.546 4.546
8 H 0.060 0.940
9 C 0.024 3.976
10 C -0.096 4.096
11 C -0.106 4.106
12 C 0.057 3.943
13 N -0.533 5.533
14 C 0.029 3.971
15 C -0.114 4.114
16 C -0.087 4.087
17 H 0.090 0.910
18 C -0.106 4.106
19 C 0.075 3.925
20 O -0.600 6.600
21 C 0.037 3.963
22 H 0.264 0.736
23 H -0.011 1.011
24 H -0.012 1.012
25 H 0.051 0.949
26 H 0.050 0.950
27 H 0.053 0.947
28 H 0.054 0.946
29 H 0.038 0.962
30 H 0.075 0.925
31 H 0.072 0.928
32 H 0.044 0.956
33 H 0.089 0.911
34 H 0.073 0.927
35 H 0.067 0.933
36 H 0.058 0.942
37 H 0.055 0.945
38 H 0.058 0.942
39 H 0.397 0.603
40 H 0.049 0.951
41 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.388 -23.876 -4.699 24.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.201 4.201
3 Si 0.791 3.209
4 H -0.191 1.191
5 H -0.207 1.207
6 H -0.191 1.191
7 C -0.584 4.584
8 H 0.078 0.922
9 C -0.013 4.013
10 C -0.134 4.134
11 C -0.144 4.144
12 C -0.071 4.071
13 N -0.257 5.257
14 C -0.099 4.099
15 C -0.152 4.152
16 C -0.106 4.106
17 H 0.109 0.891
18 C -0.143 4.143
19 C -0.002 4.002
20 O -0.408 6.408
21 C -0.091 4.091
22 H 0.073 0.927
23 H 0.008 0.992
24 H 0.007 0.993
25 H 0.070 0.930
26 H 0.069 0.931
27 H 0.071 0.929
28 H 0.073 0.927
29 H 0.056 0.944
30 H 0.093 0.907
31 H 0.090 0.910
32 H 0.062 0.938
33 H 0.107 0.893
34 H 0.091 0.909
35 H 0.086 0.914
36 H 0.077 0.923
37 H 0.073 0.927
38 H 0.076 0.924
39 H 0.247 0.753
40 H 0.067 0.933
41 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 3.291 -23.448 -3.730 23.970
hybrid contribution 0.202 1.005 -1.051 1.468
sum 3.493 -22.443 -4.780 23.211
Atomic orbital electron populations
1.70104 1.07877 1.27867 1.51661 1.26040 0.95822 1.03531 0.94696
0.85471 0.78259 0.77901 0.79246 1.19060 1.20743 1.19114 1.21712
0.93569 0.92503 1.50608 0.92172 1.19007 0.94476 0.93286 0.94556
1.21401 0.97979 0.93610 1.00449 1.21536 0.98033 0.93416 1.01366
1.22224 0.95407 0.88516 1.00908 1.64792 1.14385 1.02637 1.43869
1.23271 0.96327 0.97822 0.92492 1.22610 0.96792 0.93083 1.02722
1.21899 0.96103 0.93678 0.98941 0.89128 1.21510 1.01273 0.93046
0.98505 1.22243 0.99875 0.84275 0.93851 1.86426 1.84765 1.23754
1.45874 1.23001 0.94650 0.91288 1.00156 0.92741 0.99247 0.99336
0.93049 0.93124 0.92859 0.92730 0.94409 0.90655 0.90979 0.93816
0.89266 0.90870 0.91449 0.92286 0.92716 0.92381 0.75336 0.93310
0.90275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16
2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16
3 Si 0.97 45.04 29.54 68.60 2.03 47.06 16
4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16
6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16
7 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16
8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16
9 C 0.02 1.31 4.97 29.85 0.15 1.46 16
10 C -0.10 -4.09 5.15 30.59 0.16 -3.93 16
11 C -0.11 -3.76 4.87 30.59 0.15 -3.61 16
12 C 0.06 1.66 5.03 86.30 0.43 2.10 16
13 N -0.53 -13.92 5.40 -883.02 -4.76 -18.68 16
14 C 0.03 0.68 5.10 86.65 0.44 1.12 16
15 C -0.11 -1.99 5.88 31.80 0.19 -1.81 16
16 C -0.09 -1.41 2.99 -9.91 -0.03 -1.44 16
17 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16
18 C -0.11 -1.70 4.74 30.59 0.15 -1.55 16
19 C 0.07 0.98 6.92 71.98 0.50 1.48 16
20 O -0.60 -9.15 13.66 -148.98 -2.03 -11.19 16
21 C 0.04 0.76 6.36 86.45 0.55 1.31 16
22 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
23 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16
24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16
25 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
26 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16
27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
28 H 0.05 1.94 6.79 -2.39 -0.02 1.93 16
29 H 0.04 1.05 7.81 -2.39 -0.02 1.03 16
30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
31 H 0.07 1.88 7.66 -2.39 -0.02 1.86 16
32 H 0.04 1.05 8.00 -2.39 -0.02 1.03 16
33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
34 H 0.07 1.34 7.77 -2.39 -0.02 1.32 16
35 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16
36 H 0.06 1.14 8.00 -2.38 -0.02 1.12 16
37 H 0.05 0.63 7.58 -2.38 -0.02 0.61 16
38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
39 H 0.40 2.28 9.12 -74.06 -0.68 1.61 16
40 H 0.05 0.97 7.57 -2.39 -0.02 0.95 16
41 H 0.08 1.62 7.68 -2.39 -0.02 1.60 16
Total: -1.00 -68.88 325.24 -0.82 -69.70
By element:
Atomic # 1 Polarization: 7.32 SS G_CDS: 0.29 Total: 7.61 kcal
Atomic # 6 Polarization: -39.82 SS G_CDS: 3.38 Total: -36.44 kcal
Atomic # 7 Polarization: -72.26 SS G_CDS: -4.48 Total: -76.74 kcal
Atomic # 8 Polarization: -9.15 SS G_CDS: -2.03 Total: -11.19 kcal
Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal
Total: -68.88 -0.82 -69.70 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385293267.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.979 kcal
(2) G-P(sol) polarization free energy of solvation -68.878 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.676 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds