Wall clock time and date at job start Mon Mar 30 2020 03:19:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86805 * 120.00110 * 2 1
4 4 H 1.48507 * 109.46918 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.46968 * 299.99886 * 3 2 1
6 6 H 1.48497 * 109.47191 * 59.99957 * 3 2 1
7 7 C 1.37883 * 120.00230 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00267 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99720 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.47235 * 179.97438 * 10 9 7
12 12 C 1.53003 * 109.47148 * 180.02562 * 11 10 9
13 13 N 1.46895 * 109.46905 * 180.02562 * 12 11 10
14 14 C 1.48562 * 111.00142 * 74.58056 * 13 12 11
15 15 C 1.54377 * 104.59407 * 159.03785 * 14 13 12
16 16 C 1.54266 * 105.06190 * 336.14868 * 15 14 13
17 17 H 1.08996 * 110.32023 * 118.89709 * 16 15 14
18 18 C 1.52993 * 110.32247 * 241.00140 * 16 15 14
19 19 C 1.53004 * 109.47257 * 293.54343 * 18 16 15
20 20 O 1.42904 * 109.47142 * 180.02562 * 19 18 16
21 21 C 1.48562 * 110.99842 * 190.00219 * 13 12 11
22 22 H 0.96998 * 119.99964 * 0.02562 * 1 2 3
23 23 H 1.09006 * 109.46715 * 59.99777 * 9 7 2
24 24 H 1.08997 * 109.47084 * 300.00155 * 9 7 2
25 25 H 1.09010 * 109.46739 * 60.00145 * 10 9 7
26 26 H 1.08997 * 109.47655 * 300.00303 * 10 9 7
27 27 H 1.08997 * 109.46608 * 60.00569 * 11 10 9
28 28 H 1.08997 * 109.47290 * 300.00825 * 11 10 9
29 29 H 1.09001 * 109.46777 * 60.00260 * 12 11 10
30 30 H 1.09000 * 109.47051 * 300.00140 * 12 11 10
31 31 H 1.09000 * 110.41111 * 40.26361 * 14 13 12
32 32 H 1.08989 * 110.41482 * 277.81625 * 14 13 12
33 33 H 1.09005 * 110.32720 * 217.25400 * 15 14 13
34 34 H 1.09003 * 110.32570 * 95.04509 * 15 14 13
35 35 H 1.08994 * 109.47541 * 53.54978 * 18 16 15
36 36 H 1.09004 * 109.47209 * 173.54817 * 18 16 15
37 37 H 1.08999 * 109.47161 * 300.00286 * 19 18 16
38 38 H 1.08995 * 109.47191 * 60.00666 * 19 18 16
39 39 H 0.96700 * 114.00246 * 180.02562 * 20 19 18
40 40 H 1.08998 * 110.41528 * 82.17831 * 21 13 12
41 41 H 1.08997 * 110.50874 * 319.78619 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9871 0.0012
12 6 2.4745 -6.1500 0.0018
13 7 1.7400 -7.4222 0.0018
14 6 1.1549 -7.6992 -1.3354
15 6 0.9116 -9.2236 -1.3453
16 6 1.8995 -9.7940 -0.3067
17 1 1.3579 -10.2954 0.4953
18 6 2.8734 -10.7650 -0.9771
19 6 2.1094 -11.9970 -1.4665
20 8 3.0192 -12.9042 -2.0921
21 6 2.6565 -8.5661 0.2433
22 1 -0.4850 0.8400 -0.0004
23 1 0.6247 -2.5570 -0.8897
24 1 0.6240 -2.5567 0.8903
25 1 2.8719 -3.6043 0.8906
26 1 2.8720 -3.6044 -0.8894
27 1 0.8534 -5.0451 -0.8886
28 1 0.8538 -5.0445 0.8913
29 1 3.1010 -6.0918 0.8919
30 1 3.1012 -6.0927 -0.8881
31 1 1.8561 -7.4210 -2.1221
32 1 0.2137 -7.1633 -1.4569
33 1 1.1218 -9.6342 -2.3330
34 1 -0.1148 -9.4452 -1.0529
35 1 3.3512 -10.2734 -1.8245
36 1 3.6339 -11.0709 -0.2586
37 1 1.6318 -12.4886 -0.6191
38 1 1.3491 -11.6913 -2.1851
39 1 2.6029 -13.7099 -2.4277
40 1 2.8459 -8.6829 1.3104
41 1 3.5937 -8.4248 -0.2950
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385293269.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:10
Heat of formation + Delta-G solvation = -80.470582 kcal
Electronic energy + Delta-G solvation = -16994.796498 eV
Core-core repulsion = 14294.200206 eV
Total energy + Delta-G solvation = -2700.596292 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.41956 -37.26455 -35.21995 -33.49824 -32.01119 -30.02021 -28.68701 -27.14471
-24.45321 -23.00795 -22.09468 -20.76965 -20.12802 -19.62018 -17.69811 -16.49281
-16.16862 -15.47844 -15.15608 -14.76940 -14.59169 -14.39824 -13.77672 -13.28932
-12.88777 -12.58458 -12.39659 -12.23569 -11.94559 -11.69232 -11.45110 -11.27250
-11.00554 -10.94187 -10.91881 -10.68293 -10.43383 -10.41919 -10.33015 -10.26219
-9.58102 -9.22499 -8.96032 -8.41711 -8.30430 -5.95414 -3.97401 3.33399
3.40565 3.45015 3.73166 4.12142 4.44993 4.49680 4.50927 4.77924
4.87096 4.93648 5.12024 5.22570 5.27999 5.39196 5.40544 5.46705
5.55028 5.61006 5.66383 5.71828 5.77425 5.94733 5.99441 6.00087
6.10776 6.18092 6.29104 6.55844 6.82681 6.95618 7.01815 7.10202
7.24346 7.28138 7.74506 7.90564 8.06174 8.49124 9.10443 9.66320
11.16022
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.074284 B = 0.003001 C = 0.002962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 376.841353 B = 9328.713138 C = 9451.340160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.055 3.945
3 Si 0.891 3.109
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.519 4.519
8 H 0.054 0.946
9 C 0.021 3.979
10 C -0.109 4.109
11 C -0.110 4.110
12 C 0.045 3.955
13 N -0.511 5.511
14 C 0.031 3.969
15 C -0.123 4.123
16 C -0.090 4.090
17 H 0.081 0.919
18 C -0.113 4.113
19 C 0.075 3.925
20 O -0.578 6.578
21 C 0.036 3.964
22 H 0.259 0.741
23 H 0.014 0.986
24 H 0.016 0.984
25 H 0.046 0.954
26 H 0.044 0.956
27 H 0.054 0.946
28 H 0.064 0.936
29 H 0.071 0.929
30 H 0.033 0.967
31 H 0.043 0.957
32 H 0.083 0.917
33 H 0.068 0.932
34 H 0.071 0.929
35 H 0.069 0.931
36 H 0.070 0.930
37 H 0.045 0.955
38 H 0.048 0.952
39 H 0.379 0.621
40 H 0.080 0.920
41 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.975 -23.895 -2.626 24.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.146 4.146
3 Si 0.719 3.281
4 H -0.198 1.198
5 H -0.211 1.211
6 H -0.210 1.210
7 C -0.557 4.557
8 H 0.073 0.927
9 C -0.016 4.016
10 C -0.148 4.148
11 C -0.148 4.148
12 C -0.083 4.083
13 N -0.235 5.235
14 C -0.097 4.097
15 C -0.161 4.161
16 C -0.109 4.109
17 H 0.099 0.901
18 C -0.150 4.150
19 C -0.003 4.003
20 O -0.383 6.383
21 C -0.092 4.092
22 H 0.069 0.931
23 H 0.032 0.968
24 H 0.034 0.966
25 H 0.065 0.935
26 H 0.062 0.938
27 H 0.073 0.927
28 H 0.083 0.917
29 H 0.089 0.911
30 H 0.052 0.948
31 H 0.061 0.939
32 H 0.102 0.898
33 H 0.087 0.913
34 H 0.090 0.910
35 H 0.088 0.912
36 H 0.089 0.911
37 H 0.064 0.936
38 H 0.066 0.934
39 H 0.225 0.775
40 H 0.098 0.902
41 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 2.853 -23.242 -2.040 23.505
hybrid contribution 0.617 0.565 -0.769 1.136
sum 3.470 -22.677 -2.809 23.112
Atomic orbital electron populations
1.69978 1.06045 1.26379 1.51188 1.25041 0.94847 0.99238 0.95477
0.86558 0.80122 0.83908 0.77545 1.19777 1.21056 1.21022 1.21334
0.93045 0.91218 1.50094 0.92738 1.19091 0.94034 0.91342 0.97146
1.21605 0.99088 0.94075 0.99994 1.21593 0.97775 0.93423 1.02013
1.22406 0.96102 0.89230 1.00519 1.65416 1.29223 1.01725 1.27095
1.23139 1.00524 0.95515 0.90489 1.22458 0.99694 0.95255 0.98694
1.21830 0.95967 0.95171 0.97897 0.90102 1.21584 0.98312 0.94321
1.00821 1.22247 0.91690 0.90400 0.95964 1.86477 1.38491 1.34061
1.79267 1.23128 0.94627 0.90274 1.01155 0.93122 0.96756 0.96600
0.93507 0.93751 0.92731 0.91738 0.91082 0.94844 0.93867 0.89841
0.91329 0.90989 0.91214 0.91104 0.93648 0.93391 0.77467 0.90178
0.93786
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16
2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16
3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16
4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16
5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16
8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16
9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16
10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16
11 C -0.11 -1.97 5.33 -26.73 -0.14 -2.11 16
12 C 0.05 0.68 4.83 -3.83 -0.02 0.66 16
13 N -0.51 -6.86 5.34 -229.98 -1.23 -8.09 16
14 C 0.03 0.38 5.91 -2.18 -0.01 0.36 16
15 C -0.12 -1.16 6.14 -25.35 -0.16 -1.31 16
16 C -0.09 -0.81 3.09 -89.24 -0.28 -1.09 16
17 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
18 C -0.11 -0.96 4.78 -26.73 -0.13 -1.09 16
19 C 0.07 0.55 6.87 37.16 0.26 0.81 16
20 O -0.58 -4.78 13.66 -35.23 -0.48 -5.26 16
21 C 0.04 0.40 6.00 -2.18 -0.01 0.39 16
22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
23 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16
24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
25 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16
26 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16
27 H 0.05 0.98 7.47 -51.93 -0.39 0.59 16
28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
29 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16
30 H 0.03 0.49 7.77 -51.93 -0.40 0.09 16
31 H 0.04 0.53 7.75 -51.93 -0.40 0.13 16
32 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16
33 H 0.07 0.58 6.85 -51.93 -0.36 0.22 16
34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
38 H 0.05 0.32 6.93 -51.93 -0.36 -0.04 16
39 H 0.38 1.36 9.12 45.56 0.42 1.78 16
40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
41 H 0.04 0.48 7.72 -51.93 -0.40 0.08 16
LS Contribution 325.94 15.07 4.91 4.91
Total: -1.00 -32.29 325.94 -9.17 -41.47
By element:
Atomic # 1 Polarization: 3.02 SS G_CDS: -6.91 Total: -3.89 kcal
Atomic # 6 Polarization: -18.17 SS G_CDS: -1.18 Total: -19.35 kcal
Atomic # 7 Polarization: -34.45 SS G_CDS: -0.49 Total: -34.94 kcal
Atomic # 8 Polarization: -4.78 SS G_CDS: -0.48 Total: -5.26 kcal
Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -32.29 -9.17 -41.47 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385293269.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.003 kcal
(2) G-P(sol) polarization free energy of solvation -32.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.298 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds