Wall clock time and date at job start Mon Mar 30 2020 03:19:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86805 * 120.00110 * 2 1
4 4 H 1.48507 * 109.46918 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.46968 * 299.99886 * 3 2 1
6 6 H 1.48497 * 109.47191 * 59.99957 * 3 2 1
7 7 C 1.37883 * 120.00230 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00267 * 179.97438 * 7 2 1
9 9 C 1.50699 * 119.99720 * 0.02562 * 7 2 1
10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.47235 * 179.97438 * 10 9 7
12 12 C 1.53003 * 109.47148 * 180.02562 * 11 10 9
13 13 N 1.46895 * 109.46905 * 180.02562 * 12 11 10
14 14 C 1.48562 * 111.00142 * 74.58056 * 13 12 11
15 15 C 1.54377 * 104.59407 * 159.03785 * 14 13 12
16 16 C 1.54266 * 105.06190 * 336.14868 * 15 14 13
17 17 H 1.08996 * 110.32023 * 118.89709 * 16 15 14
18 18 C 1.52993 * 110.32247 * 241.00140 * 16 15 14
19 19 C 1.53004 * 109.47257 * 293.54343 * 18 16 15
20 20 O 1.42904 * 109.47142 * 180.02562 * 19 18 16
21 21 C 1.48562 * 110.99842 * 190.00219 * 13 12 11
22 22 H 0.96998 * 119.99964 * 0.02562 * 1 2 3
23 23 H 1.09006 * 109.46715 * 59.99777 * 9 7 2
24 24 H 1.08997 * 109.47084 * 300.00155 * 9 7 2
25 25 H 1.09010 * 109.46739 * 60.00145 * 10 9 7
26 26 H 1.08997 * 109.47655 * 300.00303 * 10 9 7
27 27 H 1.08997 * 109.46608 * 60.00569 * 11 10 9
28 28 H 1.08997 * 109.47290 * 300.00825 * 11 10 9
29 29 H 1.09001 * 109.46777 * 60.00260 * 12 11 10
30 30 H 1.09000 * 109.47051 * 300.00140 * 12 11 10
31 31 H 1.09000 * 110.41111 * 40.26361 * 14 13 12
32 32 H 1.08989 * 110.41482 * 277.81625 * 14 13 12
33 33 H 1.09005 * 110.32720 * 217.25400 * 15 14 13
34 34 H 1.09003 * 110.32570 * 95.04509 * 15 14 13
35 35 H 1.08994 * 109.47541 * 53.54978 * 18 16 15
36 36 H 1.09004 * 109.47209 * 173.54817 * 18 16 15
37 37 H 1.08999 * 109.47161 * 300.00286 * 19 18 16
38 38 H 1.08995 * 109.47191 * 60.00666 * 19 18 16
39 39 H 0.96700 * 114.00246 * 180.02562 * 20 19 18
40 40 H 1.08998 * 110.41528 * 82.17831 * 21 13 12
41 41 H 1.08997 * 110.50874 * 319.78619 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9871 0.0012
12 6 2.4745 -6.1500 0.0018
13 7 1.7400 -7.4222 0.0018
14 6 1.1549 -7.6992 -1.3354
15 6 0.9116 -9.2236 -1.3453
16 6 1.8995 -9.7940 -0.3067
17 1 1.3579 -10.2954 0.4953
18 6 2.8734 -10.7650 -0.9771
19 6 2.1094 -11.9970 -1.4665
20 8 3.0192 -12.9042 -2.0921
21 6 2.6565 -8.5661 0.2433
22 1 -0.4850 0.8400 -0.0004
23 1 0.6247 -2.5570 -0.8897
24 1 0.6240 -2.5567 0.8903
25 1 2.8719 -3.6043 0.8906
26 1 2.8720 -3.6044 -0.8894
27 1 0.8534 -5.0451 -0.8886
28 1 0.8538 -5.0445 0.8913
29 1 3.1010 -6.0918 0.8919
30 1 3.1012 -6.0927 -0.8881
31 1 1.8561 -7.4210 -2.1221
32 1 0.2137 -7.1633 -1.4569
33 1 1.1218 -9.6342 -2.3330
34 1 -0.1148 -9.4452 -1.0529
35 1 3.3512 -10.2734 -1.8245
36 1 3.6339 -11.0709 -0.2586
37 1 1.6318 -12.4886 -0.6191
38 1 1.3491 -11.6913 -2.1851
39 1 2.6029 -13.7099 -2.4277
40 1 2.8459 -8.6829 1.3104
41 1 3.5937 -8.4248 -0.2950
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385293269.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:10
Heat of formation + Delta-G solvation = -103.199697 kcal
Electronic energy + Delta-G solvation = -16995.782106 eV
Core-core repulsion = 14294.200206 eV
Total energy + Delta-G solvation = -2701.581900 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.31104 -37.93063 -36.70827 -35.06745 -33.63876 -31.15291 -29.92498 -28.36457
-26.15141 -23.72708 -23.53991 -21.84969 -21.78020 -20.55369 -18.44764 -18.26022
-17.29706 -16.62060 -16.36592 -16.24066 -15.75101 -15.40266 -14.80482 -14.60254
-14.21903 -13.88733 -13.76356 -13.42528 -13.19322 -12.94745 -12.76378 -12.75446
-12.42514 -12.23191 -12.16595 -11.93509 -11.73895 -11.64263 -11.43056 -11.33086
-11.27723 -10.97271 -10.82475 -10.56846 -9.45365 -8.20659 -6.32258 1.39013
1.39654 1.53228 2.40315 2.95703 3.11953 3.35470 3.68704 3.70389
4.01850 4.12056 4.16906 4.27109 4.32793 4.40421 4.52924 4.55175
4.57050 4.62903 4.71878 4.78980 4.83287 4.84695 4.93191 4.95817
5.04575 5.13625 5.21266 5.26422 5.27787 5.34610 5.40460 5.54305
5.76065 5.85740 5.94081 6.07328 6.25121 6.85372 6.90971 7.37089
8.91577
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.074284 B = 0.003001 C = 0.002962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 376.841353 B = 9328.713138 C = 9451.340160
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.004 4.004
3 Si 0.968 3.032
4 H -0.262 1.262
5 H -0.277 1.277
6 H -0.277 1.277
7 C -0.544 4.544
8 H 0.060 0.940
9 C 0.023 3.977
10 C -0.097 4.097
11 C -0.099 4.099
12 C 0.055 3.945
13 N -0.525 5.525
14 C 0.026 3.974
15 C -0.116 4.116
16 C -0.080 4.080
17 H 0.090 0.910
18 C -0.109 4.109
19 C 0.074 3.926
20 O -0.600 6.600
21 C 0.034 3.966
22 H 0.264 0.736
23 H -0.012 1.012
24 H -0.011 1.011
25 H 0.051 0.949
26 H 0.049 0.951
27 H 0.048 0.952
28 H 0.054 0.946
29 H 0.076 0.924
30 H 0.036 0.964
31 H 0.040 0.960
32 H 0.072 0.928
33 H 0.081 0.919
34 H 0.079 0.921
35 H 0.058 0.942
36 H 0.068 0.932
37 H 0.058 0.942
38 H 0.056 0.944
39 H 0.397 0.603
40 H 0.085 0.915
41 H 0.044 0.956
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.990 -24.789 -2.709 25.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.201 4.201
3 Si 0.792 3.208
4 H -0.185 1.185
5 H -0.203 1.203
6 H -0.202 1.202
7 C -0.582 4.582
8 H 0.078 0.922
9 C -0.014 4.014
10 C -0.135 4.135
11 C -0.137 4.137
12 C -0.073 4.073
13 N -0.249 5.249
14 C -0.102 4.102
15 C -0.154 4.154
16 C -0.099 4.099
17 H 0.109 0.891
18 C -0.147 4.147
19 C -0.003 4.003
20 O -0.408 6.408
21 C -0.094 4.094
22 H 0.073 0.927
23 H 0.007 0.993
24 H 0.008 0.992
25 H 0.070 0.930
26 H 0.067 0.933
27 H 0.067 0.933
28 H 0.072 0.928
29 H 0.095 0.905
30 H 0.055 0.945
31 H 0.058 0.942
32 H 0.090 0.910
33 H 0.099 0.901
34 H 0.098 0.902
35 H 0.077 0.923
36 H 0.087 0.913
37 H 0.076 0.924
38 H 0.075 0.925
39 H 0.247 0.753
40 H 0.103 0.897
41 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 3.869 -24.169 -2.128 24.569
hybrid contribution 0.259 0.814 -0.749 1.136
sum 4.128 -23.355 -2.877 23.891
Atomic orbital electron populations
1.70111 1.07876 1.27734 1.51808 1.26042 0.95823 1.03543 0.94733
0.85363 0.79037 0.78565 0.77859 1.18547 1.20265 1.20241 1.21766
0.93554 0.92486 1.50361 0.92201 1.19017 0.94491 0.93309 0.94570
1.21408 0.97983 0.93685 1.00404 1.21407 0.97923 0.93133 1.01242
1.22188 0.95142 0.89001 1.00955 1.65358 1.29801 1.01742 1.27978
1.23197 0.99793 0.97468 0.89783 1.22438 1.00252 0.93131 0.99593
1.21761 0.95736 0.94460 0.97988 0.89136 1.21518 0.98168 0.94706
1.00267 1.22251 0.91426 0.89958 0.96655 1.86421 1.39616 1.35267
1.79533 1.23207 0.94439 0.90057 1.01666 0.92746 0.99324 0.99243
0.92975 0.93259 0.93289 0.92752 0.90518 0.94534 0.94209 0.90960
0.90083 0.90236 0.92337 0.91342 0.92392 0.92535 0.75287 0.89677
0.93758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16
2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16
3 Si 0.97 45.22 29.54 68.60 2.03 47.24 16
4 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16
5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16
6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16
7 C -0.54 -32.05 9.11 25.60 0.23 -31.82 16
8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16
9 C 0.02 1.28 4.97 29.85 0.15 1.43 16
10 C -0.10 -4.14 5.15 30.59 0.16 -3.98 16
11 C -0.10 -3.57 5.33 30.60 0.16 -3.40 16
12 C 0.06 1.61 4.83 86.31 0.42 2.03 16
13 N -0.53 -13.59 5.34 -881.51 -4.70 -18.29 16
14 C 0.03 0.59 5.91 86.45 0.51 1.11 16
15 C -0.12 -1.97 6.14 31.49 0.19 -1.78 16
16 C -0.08 -1.29 3.09 -9.90 -0.03 -1.33 16
17 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
18 C -0.11 -1.65 4.78 30.59 0.15 -1.50 16
19 C 0.07 0.93 6.87 71.98 0.49 1.43 16
20 O -0.60 -8.76 13.66 -148.98 -2.04 -10.79 16
21 C 0.03 0.69 6.00 86.45 0.52 1.21 16
22 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16
23 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16
24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16
25 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16
26 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16
27 H 0.05 1.80 7.47 -2.39 -0.02 1.78 16
28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
29 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16
30 H 0.04 1.04 7.77 -2.39 -0.02 1.02 16
31 H 0.04 0.94 7.75 -2.39 -0.02 0.93 16
32 H 0.07 1.82 7.85 -2.39 -0.02 1.80 16
33 H 0.08 1.18 6.85 -2.38 -0.02 1.17 16
34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16
36 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16
37 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
38 H 0.06 0.60 6.93 -2.39 -0.02 0.59 16
39 H 0.40 2.07 9.12 -74.06 -0.68 1.39 16
40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
41 H 0.04 0.91 7.72 -2.39 -0.02 0.89 16
Total: -1.00 -69.09 325.94 -0.72 -69.81
By element:
Atomic # 1 Polarization: 6.32 SS G_CDS: 0.29 Total: 6.61 kcal
Atomic # 6 Polarization: -39.80 SS G_CDS: 3.42 Total: -36.39 kcal
Atomic # 7 Polarization: -72.06 SS G_CDS: -4.42 Total: -76.48 kcal
Atomic # 8 Polarization: -8.76 SS G_CDS: -2.04 Total: -10.79 kcal
Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal
Total: -69.09 -0.72 -69.81 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385293269.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.394 kcal
(2) G-P(sol) polarization free energy of solvation -69.086 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.805 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.200 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds