Wall clock time and date at job start Mon Mar 30 2020 03:19:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86799 * 120.00155 * 2 1
4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1
5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1
6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1
7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1
10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7
12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9
13 13 N 1.46905 * 109.47327 * 180.02562 * 12 11 10
14 14 C 1.46854 * 110.99404 * 294.20455 * 13 12 11
15 15 C 1.53035 * 109.52033 * 174.15823 * 14 13 12
16 16 C 1.53117 * 109.27632 * 59.18530 * 15 14 13
17 17 C 1.53006 * 109.57663 * 182.40473 * 16 15 14
18 18 O 1.42900 * 109.47132 * 294.71656 * 17 16 15
19 19 C 1.53125 * 109.16116 * 302.34057 * 16 15 14
20 20 C 1.46847 * 111.00382 * 169.99981 * 13 12 11
21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3
22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2
23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2
24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7
25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7
26 26 H 1.09001 * 109.47289 * 299.99953 * 11 10 9
27 27 H 1.09004 * 109.47261 * 59.99697 * 11 10 9
28 28 H 1.09001 * 109.46997 * 299.99574 * 12 11 10
29 29 H 1.08992 * 109.47534 * 59.99520 * 12 11 10
30 30 H 1.08998 * 109.46338 * 294.17854 * 14 13 12
31 31 H 1.09001 * 109.46277 * 54.14866 * 14 13 12
32 32 H 1.08996 * 109.50754 * 299.24032 * 15 14 13
33 33 H 1.09001 * 109.50317 * 179.11892 * 15 14 13
34 34 H 1.08998 * 109.52887 * 62.24447 * 16 15 14
35 35 H 1.09001 * 109.46519 * 54.71104 * 17 16 15
36 36 H 1.08998 * 109.47047 * 174.70991 * 17 16 15
37 37 H 0.96694 * 114.00044 * 179.97438 * 18 17 16
38 38 H 1.09004 * 109.50048 * 297.71551 * 19 16 15
39 39 H 1.08997 * 109.50203 * 177.59887 * 19 16 15
40 40 H 1.08997 * 109.45965 * 305.85403 * 20 13 12
41 41 H 1.08998 * 109.45940 * 65.82643 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1294 0.0014
9 6 3.5115 -1.1941 0.0011
10 6 4.0215 -2.6366 0.0023
11 6 5.5514 -2.6366 0.0022
12 6 6.0614 -4.0791 0.0028
13 7 7.5305 -4.0792 0.0033
14 6 8.0571 -3.5174 -1.2471
15 6 9.5799 -3.3985 -1.1529
16 6 10.1805 -4.7844 -0.9015
17 6 11.6980 -4.6651 -0.7464
18 8 12.2704 -4.2311 -1.9817
19 6 9.5794 -5.3676 0.3805
20 6 8.0567 -5.4292 0.2419
21 1 -0.4850 0.8401 -0.0004
22 1 3.8746 -0.6800 0.8911
23 1 3.8752 -0.6805 -0.8889
24 1 3.6579 -3.1498 0.8925
25 1 3.6585 -3.1510 -0.8874
26 1 5.9148 -2.1236 -0.8882
27 1 5.9149 -2.1220 0.8918
28 1 5.6982 -4.5926 0.8930
29 1 5.6980 -4.5933 -0.8869
30 1 7.7945 -4.1718 -2.0783
31 1 7.6254 -2.5302 -1.4119
32 1 9.8429 -2.7333 -0.3306
33 1 9.9720 -2.9961 -2.0870
34 1 9.9506 -5.4391 -1.7421
35 1 11.9274 -3.9403 0.0348
36 1 12.1129 -5.6357 -0.4748
37 1 13.2320 -4.1331 -1.9567
38 1 9.8424 -4.7332 1.2270
39 1 9.9712 -6.3718 0.5420
40 1 7.6245 -5.8307 1.1584
41 1 7.7942 -6.0746 -0.5964
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385299010.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:05
Heat of formation + Delta-G solvation = -79.632437 kcal
Electronic energy + Delta-G solvation = -17344.313162 eV
Core-core repulsion = 14643.753215 eV
Total energy + Delta-G solvation = -2700.559947 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.44176 -37.17702 -35.22526 -33.49266 -31.96398 -30.96024 -29.15781 -26.80803
-24.26498 -23.40547 -22.10641 -20.74764 -19.98776 -19.82586 -17.58941 -16.60760
-15.96338 -15.54835 -15.15501 -14.61754 -14.53484 -14.17320 -14.00435 -13.36579
-13.27046 -12.65455 -12.62134 -12.47750 -12.02448 -11.75152 -11.61880 -11.31580
-11.12022 -10.87312 -10.79759 -10.58628 -10.50997 -10.39413 -10.15261 -9.78745
-9.61621 -9.42848 -9.10509 -8.48809 -8.26517 -5.99590 -3.96966 3.34811
3.41802 3.46968 3.87896 3.91613 4.50194 4.53046 4.59635 4.81796
5.04119 5.11367 5.14881 5.27031 5.31376 5.34581 5.39725 5.46143
5.50758 5.63510 5.69069 5.76949 5.87123 5.89274 5.95610 6.04549
6.11326 6.19524 6.25841 6.45449 6.71503 6.82722 6.96977 7.16034
7.20430 7.30469 7.39423 7.52562 7.86026 8.60015 9.05832 9.63615
11.14094
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.043502 B = 0.003695 C = 0.003485
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 643.492500 B = 7575.864454 C = 8031.389987
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.906 5.906
2 C 0.064 3.936
3 Si 0.881 3.119
4 H -0.278 1.278
5 H -0.288 1.288
6 H -0.265 1.265
7 C -0.519 4.519
8 H 0.070 0.930
9 C -0.014 4.014
10 C -0.101 4.101
11 C -0.117 4.117
12 C 0.056 3.944
13 N -0.540 5.540
14 C 0.051 3.949
15 C -0.106 4.106
16 C -0.090 4.090
17 C 0.081 3.919
18 O -0.573 6.573
19 C -0.109 4.109
20 C 0.057 3.943
21 H 0.262 0.738
22 H 0.015 0.985
23 H 0.009 0.991
24 H 0.053 0.947
25 H 0.050 0.950
26 H 0.055 0.945
27 H 0.064 0.936
28 H 0.072 0.928
29 H 0.031 0.969
30 H 0.030 0.970
31 H 0.082 0.918
32 H 0.068 0.932
33 H 0.071 0.929
34 H 0.072 0.928
35 H 0.047 0.953
36 H 0.043 0.957
37 H 0.377 0.623
38 H 0.073 0.927
39 H 0.065 0.935
40 H 0.075 0.925
41 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.303 -10.681 -0.629 26.554
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.546 5.546
2 C -0.137 4.137
3 Si 0.708 3.292
4 H -0.204 1.204
5 H -0.215 1.215
6 H -0.189 1.189
7 C -0.557 4.557
8 H 0.089 0.911
9 C -0.051 4.051
10 C -0.140 4.140
11 C -0.154 4.154
12 C -0.071 4.071
13 N -0.264 5.264
14 C -0.077 4.077
15 C -0.144 4.144
16 C -0.108 4.108
17 C 0.003 3.997
18 O -0.378 6.378
19 C -0.147 4.147
20 C -0.072 4.072
21 H 0.072 0.928
22 H 0.033 0.967
23 H 0.028 0.972
24 H 0.071 0.929
25 H 0.069 0.931
26 H 0.074 0.926
27 H 0.083 0.917
28 H 0.091 0.909
29 H 0.049 0.951
30 H 0.048 0.952
31 H 0.100 0.900
32 H 0.087 0.913
33 H 0.089 0.911
34 H 0.091 0.909
35 H 0.065 0.935
36 H 0.061 0.939
37 H 0.224 0.776
38 H 0.092 0.908
39 H 0.084 0.916
40 H 0.094 0.906
41 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 23.670 -10.287 -0.423 25.813
hybrid contribution 0.606 0.352 -0.482 0.850
sum 24.276 -9.935 -0.905 26.246
Atomic orbital electron populations
1.69925 1.06324 1.26804 1.51529 1.25051 0.94736 0.99226 0.94652
0.86758 0.80402 0.83552 0.78469 1.20355 1.21451 1.18942 1.21201
0.89736 0.94385 1.50399 0.91146 1.19566 0.96893 0.92519 0.96126
1.21425 0.91927 0.99745 1.00870 1.21710 0.97208 0.94574 1.01951
1.22199 0.85641 0.98693 1.00554 1.61980 1.08284 1.21170 1.35000
1.22166 0.95070 1.00482 0.89991 1.21569 0.94286 0.96144 1.02378
1.21212 0.92729 0.98265 0.98617 1.22241 0.93883 0.97733 0.85798
1.86493 1.25639 1.90671 1.35028 1.21566 0.94994 1.00681 0.97466
1.22027 0.94716 0.89763 1.00648 0.92824 0.96656 0.97231 0.92851
0.93130 0.92597 0.91693 0.90911 0.95079 0.95171 0.89972 0.91296
0.91054 0.90928 0.93520 0.93891 0.77642 0.90844 0.91626 0.90608
0.95138
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16
2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16
3 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16
4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16
5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16
7 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16
8 H 0.07 2.21 7.99 -52.48 -0.42 1.80 16
9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16
10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.19 16
11 C -0.12 -1.94 5.14 -26.73 -0.14 -2.08 16
12 C 0.06 0.80 4.96 -3.82 -0.02 0.78 16
13 N -0.54 -6.94 4.66 -234.67 -1.09 -8.04 16
14 C 0.05 0.63 5.29 -3.83 -0.02 0.61 16
15 C -0.11 -1.15 5.25 -26.65 -0.14 -1.29 16
16 C -0.09 -0.85 2.49 -90.49 -0.23 -1.07 16
17 C 0.08 0.64 6.43 37.16 0.24 0.88 16
18 O -0.57 -4.92 13.26 -35.23 -0.47 -5.39 16
19 C -0.11 -0.97 5.38 -26.65 -0.14 -1.11 16
20 C 0.06 0.60 5.46 -3.84 -0.02 0.58 16
21 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16
22 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16
23 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16
24 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16
25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
26 H 0.06 0.92 6.43 -51.93 -0.33 0.59 16
27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
28 H 0.07 1.00 7.99 -51.93 -0.41 0.59 16
29 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16
30 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16
31 H 0.08 1.08 6.21 -51.93 -0.32 0.76 16
32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
33 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16
34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
36 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
37 H 0.38 1.49 9.12 45.56 0.42 1.91 16
38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
40 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16
41 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16
LS Contribution 319.25 15.07 4.81 4.81
Total: -1.00 -32.49 319.25 -8.70 -41.19
By element:
Atomic # 1 Polarization: 3.66 SS G_CDS: -6.91 Total: -3.24 kcal
Atomic # 6 Polarization: -17.99 SS G_CDS: -1.15 Total: -19.13 kcal
Atomic # 7 Polarization: -35.57 SS G_CDS: -0.32 Total: -35.89 kcal
Atomic # 8 Polarization: -4.92 SS G_CDS: -0.47 Total: -5.39 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -32.49 -8.70 -41.19 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385299010.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.442 kcal
(2) G-P(sol) polarization free energy of solvation -32.490 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.932 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.632 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds