Wall clock time and date at job start Mon Mar 30 2020 03:19:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86799 * 120.00155 * 2 1
4 4 H 1.48497 * 109.47017 * 269.99914 * 3 2 1
5 5 H 1.48507 * 109.47241 * 29.99803 * 3 2 1
6 6 H 1.48500 * 109.47209 * 149.99768 * 3 2 1
7 7 C 1.37875 * 119.99933 * 179.97438 * 2 1 3
8 8 H 1.08005 * 120.00135 * 359.97438 * 7 2 1
9 9 C 1.50698 * 120.00046 * 180.02562 * 7 2 1
10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7
12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9
13 13 N 1.46905 * 109.47327 * 180.02562 * 12 11 10
14 14 C 1.46854 * 110.99404 * 294.20455 * 13 12 11
15 15 C 1.53035 * 109.52033 * 174.15823 * 14 13 12
16 16 C 1.53117 * 109.27632 * 59.18530 * 15 14 13
17 17 C 1.53006 * 109.57663 * 182.40473 * 16 15 14
18 18 O 1.42900 * 109.47132 * 294.71656 * 17 16 15
19 19 C 1.53125 * 109.16116 * 302.34057 * 16 15 14
20 20 C 1.46847 * 111.00382 * 169.99981 * 13 12 11
21 21 H 0.97007 * 120.00011 * 0.02562 * 1 2 3
22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2
23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2
24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7
25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7
26 26 H 1.09001 * 109.47289 * 299.99953 * 11 10 9
27 27 H 1.09004 * 109.47261 * 59.99697 * 11 10 9
28 28 H 1.09001 * 109.46997 * 299.99574 * 12 11 10
29 29 H 1.08992 * 109.47534 * 59.99520 * 12 11 10
30 30 H 1.08998 * 109.46338 * 294.17854 * 14 13 12
31 31 H 1.09001 * 109.46277 * 54.14866 * 14 13 12
32 32 H 1.08996 * 109.50754 * 299.24032 * 15 14 13
33 33 H 1.09001 * 109.50317 * 179.11892 * 15 14 13
34 34 H 1.08998 * 109.52887 * 62.24447 * 16 15 14
35 35 H 1.09001 * 109.46519 * 54.71104 * 17 16 15
36 36 H 1.08998 * 109.47047 * 174.70991 * 17 16 15
37 37 H 0.96694 * 114.00044 * 179.97438 * 18 17 16
38 38 H 1.09004 * 109.50048 * 297.71551 * 19 16 15
39 39 H 1.08997 * 109.50203 * 177.59887 * 19 16 15
40 40 H 1.08997 * 109.45965 * 305.85403 * 20 13 12
41 41 H 1.08998 * 109.45940 * 65.82643 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 1.4645 -2.1294 0.0014
9 6 3.5115 -1.1941 0.0011
10 6 4.0215 -2.6366 0.0023
11 6 5.5514 -2.6366 0.0022
12 6 6.0614 -4.0791 0.0028
13 7 7.5305 -4.0792 0.0033
14 6 8.0571 -3.5174 -1.2471
15 6 9.5799 -3.3985 -1.1529
16 6 10.1805 -4.7844 -0.9015
17 6 11.6980 -4.6651 -0.7464
18 8 12.2704 -4.2311 -1.9817
19 6 9.5794 -5.3676 0.3805
20 6 8.0567 -5.4292 0.2419
21 1 -0.4850 0.8401 -0.0004
22 1 3.8746 -0.6800 0.8911
23 1 3.8752 -0.6805 -0.8889
24 1 3.6579 -3.1498 0.8925
25 1 3.6585 -3.1510 -0.8874
26 1 5.9148 -2.1236 -0.8882
27 1 5.9149 -2.1220 0.8918
28 1 5.6982 -4.5926 0.8930
29 1 5.6980 -4.5933 -0.8869
30 1 7.7945 -4.1718 -2.0783
31 1 7.6254 -2.5302 -1.4119
32 1 9.8429 -2.7333 -0.3306
33 1 9.9720 -2.9961 -2.0870
34 1 9.9506 -5.4391 -1.7421
35 1 11.9274 -3.9403 0.0348
36 1 12.1129 -5.6357 -0.4748
37 1 13.2320 -4.1331 -1.9567
38 1 9.8424 -4.7332 1.2270
39 1 9.9712 -6.3718 0.5420
40 1 7.6245 -5.8307 1.1584
41 1 7.7942 -6.0746 -0.5964
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385299010.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:19:05
Heat of formation + Delta-G solvation = -102.853679 kcal
Electronic energy + Delta-G solvation = -17345.320111 eV
Core-core repulsion = 14643.753215 eV
Total energy + Delta-G solvation = -2701.566896 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.30975 -37.93946 -36.60101 -35.01341 -33.72276 -31.81890 -30.70049 -27.95944
-25.75499 -24.31148 -23.19428 -22.09463 -21.57382 -20.66274 -18.85407 -18.17733
-16.91313 -16.62365 -16.32092 -15.94052 -15.74230 -15.33772 -15.01398 -14.80550
-14.31725 -14.12267 -13.89266 -13.66397 -13.40553 -13.06216 -12.82968 -12.75392
-12.31332 -12.14074 -12.07904 -11.76246 -11.62228 -11.53625 -11.36973 -11.31032
-11.21604 -11.02337 -10.77555 -10.75990 -9.26991 -8.30058 -6.34139 1.35563
1.37577 1.50395 2.36417 2.92630 3.05286 3.34060 3.77817 3.83417
3.97717 4.14388 4.24749 4.31822 4.39842 4.41881 4.51278 4.52963
4.61439 4.64268 4.72955 4.75763 4.84797 4.87689 4.93193 4.96977
5.08010 5.13708 5.18734 5.21926 5.25298 5.27738 5.46890 5.57449
5.64882 5.68202 6.13499 6.20996 6.29363 6.74066 6.94439 7.30749
8.87012
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.043502 B = 0.003695 C = 0.003485
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 643.492500 B = 7575.864454 C = 8031.389987
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C 0.001 3.999
3 Si 0.954 3.046
4 H -0.266 1.266
5 H -0.282 1.282
6 H -0.247 1.247
7 C -0.535 4.535
8 H 0.030 0.970
9 C -0.012 4.012
10 C -0.094 4.094
11 C -0.104 4.104
12 C 0.063 3.937
13 N -0.545 5.545
14 C 0.050 3.950
15 C -0.100 4.100
16 C -0.090 4.090
17 C 0.083 3.917
18 O -0.595 6.595
19 C -0.102 4.102
20 C 0.052 3.948
21 H 0.266 0.734
22 H 0.019 0.981
23 H 0.016 0.984
24 H 0.049 0.951
25 H 0.044 0.956
26 H 0.058 0.942
27 H 0.064 0.936
28 H 0.078 0.922
29 H 0.028 0.972
30 H 0.025 0.975
31 H 0.071 0.929
32 H 0.066 0.934
33 H 0.066 0.934
34 H 0.062 0.938
35 H 0.053 0.947
36 H 0.060 0.940
37 H 0.396 0.604
38 H 0.074 0.926
39 H 0.087 0.913
40 H 0.083 0.917
41 H 0.029 0.971
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 27.041 -10.494 -0.262 29.007
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.594 5.594
2 C -0.195 4.195
3 Si 0.777 3.223
4 H -0.191 1.191
5 H -0.208 1.208
6 H -0.170 1.170
7 C -0.573 4.573
8 H 0.048 0.952
9 C -0.049 4.049
10 C -0.133 4.133
11 C -0.142 4.142
12 C -0.065 4.065
13 N -0.270 5.270
14 C -0.078 4.078
15 C -0.138 4.138
16 C -0.109 4.109
17 C 0.006 3.994
18 O -0.404 6.404
19 C -0.140 4.140
20 C -0.075 4.075
21 H 0.075 0.925
22 H 0.037 0.963
23 H 0.034 0.966
24 H 0.068 0.932
25 H 0.063 0.937
26 H 0.076 0.924
27 H 0.083 0.917
28 H 0.097 0.903
29 H 0.047 0.953
30 H 0.044 0.956
31 H 0.089 0.911
32 H 0.085 0.915
33 H 0.084 0.916
34 H 0.080 0.920
35 H 0.072 0.928
36 H 0.079 0.921
37 H 0.245 0.755
38 H 0.092 0.908
39 H 0.106 0.894
40 H 0.101 0.899
41 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 26.442 -10.120 -0.056 28.312
hybrid contribution -0.306 0.215 -0.615 0.720
sum 26.136 -9.905 -0.671 27.958
Atomic orbital electron populations
1.70079 1.08345 1.28193 1.52824 1.26076 0.95671 1.03711 0.94089
0.85605 0.79476 0.78007 0.79250 1.19116 1.20789 1.17020 1.21571
0.92394 0.93071 1.50269 0.95166 1.19535 0.93626 0.95423 0.96326
1.21293 0.94615 0.96899 1.00456 1.21527 0.94198 0.96469 1.02025
1.22037 0.86856 0.96825 1.00760 1.61972 1.07176 1.22744 1.35112
1.22170 0.96156 0.99722 0.89744 1.21498 0.93108 0.97195 1.01995
1.21207 0.94145 0.96963 0.98556 1.22218 0.92616 0.98899 0.85711
1.86441 1.27577 1.90806 1.35544 1.21530 0.93483 1.01949 0.97026
1.22148 0.96064 0.88409 1.00899 0.92481 0.96285 0.96596 0.93231
0.93713 0.92363 0.91727 0.90342 0.95331 0.95646 0.91064 0.91532
0.91574 0.91956 0.92830 0.92144 0.75456 0.90772 0.89436 0.89876
0.95272
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -61.45 13.96 21.45 0.30 -61.15 16
2 C 0.00 0.05 5.47 84.65 0.46 0.51 16
3 Si 0.95 45.57 27.47 68.60 1.88 47.46 16
4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16
5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16
6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16
7 C -0.54 -32.09 9.66 25.60 0.25 -31.84 16
8 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16
9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16
10 C -0.09 -3.79 5.15 30.60 0.16 -3.64 16
11 C -0.10 -3.34 5.14 30.59 0.16 -3.19 16
12 C 0.06 1.70 4.96 86.30 0.43 2.13 16
13 N -0.55 -13.16 4.66 -896.37 -4.17 -17.34 16
14 C 0.05 1.18 5.29 86.32 0.46 1.64 16
15 C -0.10 -2.04 5.25 30.65 0.16 -1.88 16
16 C -0.09 -1.52 2.49 -10.71 -0.03 -1.55 16
17 C 0.08 1.09 6.43 71.98 0.46 1.56 16
18 O -0.60 -9.01 13.26 -148.98 -1.98 -10.99 16
19 C -0.10 -1.54 5.38 30.65 0.16 -1.38 16
20 C 0.05 1.01 5.46 86.32 0.47 1.48 16
21 H 0.27 15.93 8.31 -92.70 -0.77 15.16 16
22 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16
23 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16
24 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
25 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16
26 H 0.06 1.84 6.43 -2.39 -0.02 1.83 16
27 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16
28 H 0.08 2.04 7.99 -2.39 -0.02 2.02 16
29 H 0.03 0.79 8.12 -2.39 -0.02 0.77 16
30 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16
31 H 0.07 1.81 6.21 -2.39 -0.01 1.80 16
32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
33 H 0.07 1.40 7.91 -2.39 -0.02 1.39 16
34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16
36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
37 H 0.40 2.29 9.12 -74.06 -0.68 1.61 16
38 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16
39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16
40 H 0.08 1.48 8.01 -2.39 -0.02 1.46 16
41 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16
Total: -1.00 -69.98 319.25 -0.46 -70.44
By element:
Atomic # 1 Polarization: 7.93 SS G_CDS: 0.24 Total: 8.17 kcal
Atomic # 6 Polarization: -39.86 SS G_CDS: 3.26 Total: -36.59 kcal
Atomic # 7 Polarization: -74.61 SS G_CDS: -3.88 Total: -78.49 kcal
Atomic # 8 Polarization: -9.01 SS G_CDS: -1.98 Total: -10.99 kcal
Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.46 kcal
Total: -69.98 -0.46 -70.44 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385299010.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.413 kcal
(2) G-P(sol) polarization free energy of solvation -69.978 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.854 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds