Wall clock time and date at job start Mon Mar 30 2020 03:18:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86804 * 120.00070 * 2 1
4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1
5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1
6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1
7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1
9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1
10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7
12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9
13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10
14 14 C 1.46851 * 110.99815 * 66.04232 * 13 12 11
15 15 C 1.53038 * 109.52410 * 174.16362 * 14 13 12
16 16 C 1.53119 * 109.27361 * 59.18134 * 15 14 13
17 17 C 1.53115 * 109.16744 * 302.34604 * 16 15 14
18 18 H 1.09004 * 109.50122 * 297.67845 * 17 16 15
19 19 C 1.52998 * 109.50801 * 177.59882 * 17 16 15
20 20 O 1.42899 * 109.47096 * 64.99719 * 19 17 16
21 21 C 1.46850 * 110.99627 * 301.84347 * 13 12 11
22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3
23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2
24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2
25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7
26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7
27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9
28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9
29 29 H 1.09002 * 109.47103 * 300.00247 * 12 11 10
30 30 H 1.09001 * 109.47066 * 60.00169 * 12 11 10
31 31 H 1.08996 * 109.46382 * 294.18282 * 14 13 12
32 32 H 1.09003 * 109.45787 * 54.16328 * 14 13 12
33 33 H 1.08996 * 109.50261 * 179.12015 * 15 14 13
34 34 H 1.09001 * 109.50451 * 299.20847 * 15 14 13
35 35 H 1.09004 * 109.52295 * 62.25591 * 16 15 14
36 36 H 1.09002 * 109.52106 * 182.43685 * 16 15 14
37 37 H 1.09000 * 109.47286 * 185.00259 * 19 17 16
38 38 H 1.08997 * 109.46750 * 304.99670 * 19 17 16
39 39 H 0.96700 * 114.00097 * 180.02562 * 20 19 17
40 40 H 1.09007 * 109.46068 * 305.84755 * 21 13 12
41 41 H 1.08993 * 109.46821 * 65.81823 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 6 4.0215 -2.6366 -0.0010
11 6 5.5514 -2.6367 -0.0022
12 6 6.0614 -4.0791 -0.0028
13 7 7.5304 -4.0792 -0.0046
14 6 8.0583 -3.5225 1.2476
15 6 9.5812 -3.6716 1.2718
16 6 10.1803 -2.9342 0.0710
17 6 9.5781 -3.5001 -1.2180
18 1 9.8418 -4.5537 -1.3109
19 6 10.1266 -2.7285 -2.4199
20 8 11.5333 -2.9543 -2.5293
21 6 8.0553 -3.3560 -1.1699
22 1 -0.4850 0.8401 0.0004
23 1 3.8752 -0.6804 0.8888
24 1 3.8745 -0.6801 -0.8911
25 1 3.6584 -3.1503 0.8892
26 1 3.6578 -3.1506 -0.8907
27 1 5.9141 -2.1231 -0.8927
28 1 5.9156 -2.1225 0.8872
29 1 5.6988 -4.5930 0.8875
30 1 5.6974 -4.5928 -0.8925
31 1 7.7956 -2.4668 1.3149
32 1 7.6276 -4.0586 2.0934
33 1 9.9740 -3.2442 2.1943
34 1 9.8443 -4.7280 1.2190
35 1 9.9504 -1.8713 0.1445
36 1 11.2613 -3.0740 0.0601
37 1 9.6317 -3.0714 -3.3285
38 1 9.9390 -1.6634 -2.2841
39 1 11.9490 -2.4943 -3.2714
40 1 7.6223 -3.7711 -2.0801
41 1 7.7926 -2.3011 -1.0913
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385303145.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:26
Heat of formation + Delta-G solvation = -79.390615 kcal
Electronic energy + Delta-G solvation = -17649.177009 eV
Core-core repulsion = 14948.627548 eV
Total energy + Delta-G solvation = -2700.549461 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.57397 -37.11943 -35.19853 -33.39832 -31.88158 -31.53548 -28.63539 -25.92448
-25.46161 -23.29185 -22.11206 -20.98170 -20.20818 -19.34178 -17.54826 -16.65837
-15.82705 -15.40522 -15.17540 -14.65145 -14.43471 -14.28245 -14.06005 -13.40735
-13.15469 -12.82280 -12.58277 -12.24553 -12.16675 -11.87775 -11.78164 -11.25926
-11.01250 -10.89797 -10.78782 -10.55133 -10.44595 -10.38368 -10.11709 -9.93244
-9.70482 -9.63377 -9.17245 -8.53708 -8.13754 -6.04152 -4.01737 3.29394
3.36754 3.40752 3.71140 4.24432 4.44999 4.57490 4.71038 4.84529
5.08607 5.17798 5.24169 5.27564 5.29943 5.35245 5.37711 5.40965
5.53984 5.67603 5.71276 5.76220 5.84404 5.87736 5.99636 6.06415
6.12724 6.20647 6.28033 6.39483 6.59033 6.71146 6.92614 7.11150
7.14295 7.32257 7.36589 7.45198 7.80838 8.55201 9.01317 9.58857
11.09529
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.030367 B = 0.004369 C = 0.004139
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 921.841522 B = 6407.571284 C = 6762.604173
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.065 3.935
3 Si 0.880 3.120
4 H -0.278 1.278
5 H -0.288 1.288
6 H -0.267 1.267
7 C -0.520 4.520
8 H 0.071 0.929
9 C -0.014 4.014
10 C -0.098 4.098
11 C -0.158 4.158
12 C 0.054 3.946
13 N -0.536 5.536
14 C 0.050 3.950
15 C -0.117 4.117
16 C -0.111 4.111
17 C -0.084 4.084
18 H 0.084 0.916
19 C 0.080 3.920
20 O -0.573 6.573
21 C 0.058 3.942
22 H 0.262 0.738
23 H 0.013 0.987
24 H 0.008 0.992
25 H 0.053 0.947
26 H 0.053 0.947
27 H 0.057 0.943
28 H 0.056 0.944
29 H 0.075 0.925
30 H 0.075 0.925
31 H 0.038 0.962
32 H 0.074 0.926
33 H 0.064 0.936
34 H 0.069 0.931
35 H 0.056 0.944
36 H 0.068 0.932
37 H 0.047 0.953
38 H 0.045 0.955
39 H 0.378 0.622
40 H 0.075 0.925
41 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.890 -6.040 -2.235 22.818
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.136 4.136
3 Si 0.708 3.292
4 H -0.203 1.203
5 H -0.214 1.214
6 H -0.192 1.192
7 C -0.558 4.558
8 H 0.089 0.911
9 C -0.051 4.051
10 C -0.137 4.137
11 C -0.197 4.197
12 C -0.073 4.073
13 N -0.259 5.259
14 C -0.078 4.078
15 C -0.155 4.155
16 C -0.149 4.149
17 C -0.103 4.103
18 H 0.102 0.898
19 C 0.002 3.998
20 O -0.378 6.378
21 C -0.070 4.070
22 H 0.072 0.928
23 H 0.031 0.969
24 H 0.026 0.974
25 H 0.072 0.928
26 H 0.072 0.928
27 H 0.075 0.925
28 H 0.075 0.925
29 H 0.093 0.907
30 H 0.093 0.907
31 H 0.056 0.944
32 H 0.092 0.908
33 H 0.083 0.917
34 H 0.087 0.913
35 H 0.075 0.925
36 H 0.087 0.913
37 H 0.065 0.935
38 H 0.063 0.937
39 H 0.224 0.776
40 H 0.093 0.907
41 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges 21.776 -6.792 -1.726 22.876
hybrid contribution 0.021 2.227 -0.497 2.282
sum 21.797 -4.565 -2.222 22.380
Atomic orbital electron populations
1.69920 1.06290 1.26827 1.51371 1.25047 0.94727 0.99166 0.94642
0.86769 0.80328 0.83676 0.78442 1.20350 1.21367 1.19150 1.21193
0.89664 0.94429 1.50515 0.91062 1.19573 0.97026 0.92607 0.95926
1.21374 0.91572 0.99677 1.01048 1.22326 0.98826 0.97124 1.01402
1.22290 0.85533 0.96643 1.02853 1.62161 1.07991 1.53779 1.01990
1.22129 0.95042 0.98258 0.92372 1.21596 0.94762 1.01243 0.97855
1.21558 1.00300 0.99189 0.93852 1.21147 0.94310 1.00990 0.93834
0.89793 1.22188 0.81259 0.98600 0.97795 1.86463 1.21741 1.75043
1.54543 1.22013 0.93475 0.97186 0.94306 0.92778 0.96914 0.97363
0.92808 0.92832 0.92455 0.92525 0.90657 0.90680 0.94383 0.90778
0.91695 0.91272 0.92517 0.91332 0.93499 0.93665 0.77596 0.90687
0.94069
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16
2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16
3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16
4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16
7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16
8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16
9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16
10 C -0.10 -1.95 5.15 -26.73 -0.14 -2.09 16
11 C -0.16 -2.52 4.52 -26.74 -0.12 -2.64 16
12 C 0.05 0.74 5.36 -3.83 -0.02 0.72 16
13 N -0.54 -6.74 4.86 -234.66 -1.14 -7.89 16
14 C 0.05 0.59 5.05 -3.83 -0.02 0.57 16
15 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16
16 C -0.11 -1.16 5.15 -26.61 -0.14 -1.30 16
17 C -0.08 -0.89 2.59 -90.54 -0.23 -1.12 16
18 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16
19 C 0.08 0.73 6.43 37.16 0.24 0.97 16
20 O -0.57 -5.24 13.24 -35.23 -0.47 -5.71 16
21 C 0.06 0.68 4.12 -3.83 -0.02 0.66 16
22 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
23 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16
24 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16
25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16
27 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16
28 H 0.06 0.92 6.68 -51.93 -0.35 0.57 16
29 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16
30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
31 H 0.04 0.48 6.76 -51.93 -0.35 0.13 16
32 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16
33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
36 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16
37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
39 H 0.38 1.75 9.12 45.56 0.42 2.16 16
40 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16
41 H 0.04 0.51 6.61 -51.93 -0.34 0.17 16
LS Contribution 316.08 15.07 4.76 4.76
Total: -1.00 -31.97 316.08 -8.68 -40.65
By element:
Atomic # 1 Polarization: 4.76 SS G_CDS: -6.79 Total: -2.03 kcal
Atomic # 6 Polarization: -18.52 SS G_CDS: -1.15 Total: -19.67 kcal
Atomic # 7 Polarization: -35.06 SS G_CDS: -0.37 Total: -35.43 kcal
Atomic # 8 Polarization: -5.24 SS G_CDS: -0.47 Total: -5.71 kcal
Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal
Total LS contribution 4.76 Total: 4.76 kcal
Total: -31.97 -8.68 -40.65 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385303145.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.740 kcal
(2) G-P(sol) polarization free energy of solvation -31.969 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.709 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.650 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.391 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds