Wall clock time and date at job start Mon Mar 30 2020 03:18:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86804 * 120.00070 * 2 1
4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1
5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1
6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1
7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1
9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1
10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7
12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9
13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10
14 14 C 1.46851 * 110.99815 * 66.04232 * 13 12 11
15 15 C 1.53038 * 109.52410 * 174.16362 * 14 13 12
16 16 C 1.53119 * 109.27361 * 59.18134 * 15 14 13
17 17 C 1.53115 * 109.16744 * 302.34604 * 16 15 14
18 18 H 1.09004 * 109.50122 * 297.67845 * 17 16 15
19 19 C 1.52998 * 109.50801 * 177.59882 * 17 16 15
20 20 O 1.42899 * 109.47096 * 64.99719 * 19 17 16
21 21 C 1.46850 * 110.99627 * 301.84347 * 13 12 11
22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3
23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2
24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2
25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7
26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7
27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9
28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9
29 29 H 1.09002 * 109.47103 * 300.00247 * 12 11 10
30 30 H 1.09001 * 109.47066 * 60.00169 * 12 11 10
31 31 H 1.08996 * 109.46382 * 294.18282 * 14 13 12
32 32 H 1.09003 * 109.45787 * 54.16328 * 14 13 12
33 33 H 1.08996 * 109.50261 * 179.12015 * 15 14 13
34 34 H 1.09001 * 109.50451 * 299.20847 * 15 14 13
35 35 H 1.09004 * 109.52295 * 62.25591 * 16 15 14
36 36 H 1.09002 * 109.52106 * 182.43685 * 16 15 14
37 37 H 1.09000 * 109.47286 * 185.00259 * 19 17 16
38 38 H 1.08997 * 109.46750 * 304.99670 * 19 17 16
39 39 H 0.96700 * 114.00097 * 180.02562 * 20 19 17
40 40 H 1.09007 * 109.46068 * 305.84755 * 21 13 12
41 41 H 1.08993 * 109.46821 * 65.81823 * 21 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0464 -1.4001
5 1 1.4466 2.6527 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1941 -0.0005
8 1 1.4645 -2.1294 -0.0005
9 6 3.5115 -1.1941 -0.0011
10 6 4.0215 -2.6366 -0.0010
11 6 5.5514 -2.6367 -0.0022
12 6 6.0614 -4.0791 -0.0028
13 7 7.5304 -4.0792 -0.0046
14 6 8.0583 -3.5225 1.2476
15 6 9.5812 -3.6716 1.2718
16 6 10.1803 -2.9342 0.0710
17 6 9.5781 -3.5001 -1.2180
18 1 9.8418 -4.5537 -1.3109
19 6 10.1266 -2.7285 -2.4199
20 8 11.5333 -2.9543 -2.5293
21 6 8.0553 -3.3560 -1.1699
22 1 -0.4850 0.8401 0.0004
23 1 3.8752 -0.6804 0.8888
24 1 3.8745 -0.6801 -0.8911
25 1 3.6584 -3.1503 0.8892
26 1 3.6578 -3.1506 -0.8907
27 1 5.9141 -2.1231 -0.8927
28 1 5.9156 -2.1225 0.8872
29 1 5.6988 -4.5930 0.8875
30 1 5.6974 -4.5928 -0.8925
31 1 7.7956 -2.4668 1.3149
32 1 7.6276 -4.0586 2.0934
33 1 9.9740 -3.2442 2.1943
34 1 9.8443 -4.7280 1.2190
35 1 9.9504 -1.8713 0.1445
36 1 11.2613 -3.0740 0.0601
37 1 9.6317 -3.0714 -3.3285
38 1 9.9390 -1.6634 -2.2841
39 1 11.9490 -2.4943 -3.2714
40 1 7.6223 -3.7711 -2.0801
41 1 7.7926 -2.3011 -1.0913
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385303145.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:26
Heat of formation + Delta-G solvation = -102.300914 kcal
Electronic energy + Delta-G solvation = -17650.170474 eV
Core-core repulsion = 14948.627548 eV
Total energy + Delta-G solvation = -2701.542926 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.49400 -37.92299 -36.55305 -35.00563 -33.57056 -32.43713 -30.24818 -26.88523
-26.70500 -24.69892 -23.11382 -22.00507 -21.93637 -20.31070 -18.87582 -18.22538
-16.79889 -16.44960 -16.30913 -16.14618 -15.63679 -15.39416 -15.08286 -14.82337
-14.38295 -14.23252 -13.70312 -13.62267 -13.46431 -13.28363 -12.85772 -12.69416
-12.41410 -12.14171 -11.90915 -11.78581 -11.74130 -11.51183 -11.34109 -11.31017
-11.23822 -11.19229 -10.80722 -10.78845 -9.18705 -8.31856 -6.36072 1.32459
1.34698 1.46796 2.33679 2.85823 3.03248 3.49697 3.77029 3.87398
3.99138 4.04339 4.13328 4.33537 4.38744 4.39979 4.49657 4.54680
4.58184 4.62292 4.65298 4.75636 4.88024 4.90480 4.92359 4.97730
5.03967 5.13515 5.16275 5.19453 5.25057 5.34970 5.47273 5.54081
5.60407 5.65717 6.13066 6.16601 6.27071 6.72289 6.91727 7.28845
8.85204
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.030367 B = 0.004369 C = 0.004139
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 921.841522 B = 6407.571284 C = 6762.604173
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.952 5.952
2 C 0.002 3.998
3 Si 0.953 3.047
4 H -0.265 1.265
5 H -0.282 1.282
6 H -0.249 1.249
7 C -0.536 4.536
8 H 0.031 0.969
9 C -0.012 4.012
10 C -0.092 4.092
11 C -0.144 4.144
12 C 0.061 3.939
13 N -0.538 5.538
14 C 0.048 3.952
15 C -0.112 4.112
16 C -0.109 4.109
17 C -0.081 4.081
18 H 0.073 0.927
19 C 0.082 3.918
20 O -0.589 6.589
21 C 0.058 3.942
22 H 0.267 0.733
23 H 0.015 0.985
24 H 0.015 0.985
25 H 0.048 0.952
26 H 0.049 0.951
27 H 0.060 0.940
28 H 0.056 0.944
29 H 0.077 0.923
30 H 0.078 0.922
31 H 0.030 0.970
32 H 0.076 0.924
33 H 0.078 0.922
34 H 0.067 0.933
35 H 0.055 0.945
36 H 0.068 0.932
37 H 0.056 0.944
38 H 0.050 0.950
39 H 0.396 0.604
40 H 0.078 0.922
41 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 24.235 -5.260 -2.444 24.920
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.593 5.593
2 C -0.194 4.194
3 Si 0.776 3.224
4 H -0.190 1.190
5 H -0.208 1.208
6 H -0.173 1.173
7 C -0.574 4.574
8 H 0.049 0.951
9 C -0.049 4.049
10 C -0.130 4.130
11 C -0.183 4.183
12 C -0.067 4.067
13 N -0.261 5.261
14 C -0.080 4.080
15 C -0.150 4.150
16 C -0.146 4.146
17 C -0.100 4.100
18 H 0.092 0.908
19 C 0.004 3.996
20 O -0.397 6.397
21 C -0.070 4.070
22 H 0.075 0.925
23 H 0.033 0.967
24 H 0.033 0.967
25 H 0.066 0.934
26 H 0.068 0.932
27 H 0.079 0.921
28 H 0.075 0.925
29 H 0.096 0.904
30 H 0.097 0.903
31 H 0.048 0.952
32 H 0.095 0.905
33 H 0.096 0.904
34 H 0.086 0.914
35 H 0.073 0.927
36 H 0.086 0.914
37 H 0.074 0.926
38 H 0.068 0.932
39 H 0.246 0.754
40 H 0.096 0.904
41 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 24.149 -6.024 -1.948 24.965
hybrid contribution -0.757 1.907 -0.440 2.099
sum 23.391 -4.117 -2.388 23.871
Atomic orbital electron populations
1.70075 1.08317 1.28195 1.52708 1.26063 0.95649 1.03631 0.94098
0.85619 0.79365 0.78157 0.79256 1.19011 1.20781 1.17302 1.21569
0.92364 0.93102 1.50330 0.95078 1.19542 0.93714 0.95604 0.96060
1.21252 0.94419 0.96715 1.00662 1.22173 0.95544 0.98984 1.01560
1.22187 0.86348 0.94935 1.03203 1.62201 1.07069 1.54123 1.02721
1.22191 0.96065 0.97673 0.92087 1.21572 0.93647 1.01267 0.98503
1.21531 1.00222 0.99044 0.93841 1.21096 0.93556 1.00626 0.94739
0.90834 1.22126 0.81452 0.98586 0.97443 1.86410 1.21727 1.75677
1.55903 1.22042 0.94276 0.96624 0.94030 0.92461 0.96707 0.96680
0.93362 0.93211 0.92094 0.92528 0.90422 0.90340 0.95199 0.90505
0.90374 0.91414 0.92664 0.91367 0.92606 0.93187 0.75385 0.90357
0.94665
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16
2 C 0.00 0.13 5.47 84.65 0.46 0.59 16
3 Si 0.95 44.95 27.47 68.60 1.88 46.84 16
4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16
6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16
7 C -0.54 -31.70 9.66 25.60 0.25 -31.45 16
8 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16
9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16
10 C -0.09 -3.58 5.15 30.59 0.16 -3.43 16
11 C -0.14 -4.33 4.52 30.59 0.14 -4.19 16
12 C 0.06 1.56 5.36 86.30 0.46 2.02 16
13 N -0.54 -12.58 4.86 -896.34 -4.36 -16.93 16
14 C 0.05 1.04 5.05 86.33 0.44 1.47 16
15 C -0.11 -2.08 6.09 30.65 0.19 -1.90 16
16 C -0.11 -2.06 5.15 30.67 0.16 -1.90 16
17 C -0.08 -1.57 2.59 -10.74 -0.03 -1.60 16
18 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
19 C 0.08 1.33 6.43 71.98 0.46 1.79 16
20 O -0.59 -9.55 13.24 -148.98 -1.97 -11.53 16
21 C 0.06 1.25 4.12 86.33 0.36 1.61 16
22 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16
23 H 0.01 0.69 7.20 -2.39 -0.02 0.68 16
24 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16
25 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
26 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
27 H 0.06 1.80 6.50 -2.39 -0.02 1.79 16
28 H 0.06 1.72 6.68 -2.39 -0.02 1.70 16
29 H 0.08 1.95 8.06 -2.39 -0.02 1.93 16
30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
31 H 0.03 0.70 6.76 -2.39 -0.02 0.69 16
32 H 0.08 1.62 8.06 -2.39 -0.02 1.60 16
33 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16
34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
36 H 0.07 1.31 7.90 -2.39 -0.02 1.29 16
37 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16
38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16
39 H 0.40 2.80 9.12 -74.06 -0.68 2.12 16
40 H 0.08 1.62 8.12 -2.38 -0.02 1.60 16
41 H 0.04 0.80 6.61 -2.39 -0.02 0.79 16
Total: -1.00 -68.35 316.08 -0.74 -69.09
By element:
Atomic # 1 Polarization: 10.15 SS G_CDS: 0.25 Total: 10.39 kcal
Atomic # 6 Polarization: -40.59 SS G_CDS: 3.16 Total: -37.43 kcal
Atomic # 7 Polarization: -73.31 SS G_CDS: -4.06 Total: -77.36 kcal
Atomic # 8 Polarization: -9.55 SS G_CDS: -1.97 Total: -11.53 kcal
Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal
Total: -68.35 -0.74 -69.09 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385303145.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -33.209 kcal
(2) G-P(sol) polarization free energy of solvation -68.353 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.562 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.301 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds