Wall clock time and date at job start Mon Mar 30 2020 03:24:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.52999 * 110.06596 * 2 1
4 4 C 1.53992 * 109.91369 * 238.79734 * 2 1 3
5 5 H 1.08999 * 110.39191 * 120.46531 * 4 2 1
6 6 O 1.42906 * 110.31370 * 358.33733 * 4 2 1
7 7 C 1.54600 * 105.14089 * 239.42140 * 4 2 1
8 8 C 1.54936 * 102.91773 * 338.04564 * 7 4 2
9 9 N 1.47892 * 109.91723 * 121.20787 * 2 1 3
10 10 C 1.46901 * 111.00032 * 265.19717 * 9 2 1
11 11 C 1.53005 * 109.47225 * 176.86115 * 10 9 2
12 12 C 1.52998 * 109.46729 * 185.31407 * 11 10 9
13 13 C 1.53005 * 109.46729 * 179.97438 * 12 11 10
14 14 C 1.50703 * 109.47041 * 179.97438 * 13 12 11
15 15 H 1.07996 * 119.99791 * 359.97438 * 14 13 12
16 16 C 1.37881 * 119.99840 * 180.02562 * 14 13 12
17 17 N 1.31511 * 120.00237 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 119.99629 * 180.02562 * 16 14 13
19 19 H 1.48490 * 109.47455 * 359.97438 * 18 16 14
20 20 H 1.48498 * 109.47052 * 119.99993 * 18 16 14
21 21 H 1.48505 * 109.46791 * 239.99466 * 18 16 14
22 22 H 1.08995 * 109.47072 * 298.79625 * 1 2 3
23 23 H 1.09003 * 109.47240 * 58.79279 * 1 2 3
24 24 H 1.09002 * 109.47113 * 178.79454 * 1 2 3
25 25 H 1.08995 * 109.47150 * 175.01568 * 3 2 1
26 26 H 1.09000 * 109.47025 * 295.02117 * 3 2 1
27 27 H 1.09005 * 109.46880 * 55.01609 * 3 2 1
28 28 H 0.96699 * 113.99985 * 182.83095 * 6 4 2
29 29 H 1.08993 * 110.72472 * 219.69178 * 7 4 2
30 30 H 1.08998 * 110.72131 * 96.39871 * 7 4 2
31 31 H 1.09005 * 110.66782 * 278.97731 * 8 7 4
32 32 H 1.09001 * 110.66991 * 155.84635 * 8 7 4
33 33 H 1.09000 * 109.46825 * 296.85759 * 10 9 2
34 34 H 1.08999 * 109.47385 * 56.86079 * 10 9 2
35 35 H 1.09004 * 109.47049 * 305.31067 * 11 10 9
36 36 H 1.08997 * 109.46832 * 65.31415 * 11 10 9
37 37 H 1.09004 * 109.47077 * 299.99643 * 12 11 10
38 38 H 1.08994 * 109.47753 * 59.99989 * 12 11 10
39 39 H 1.08994 * 109.47128 * 299.99662 * 13 12 11
40 40 H 1.09004 * 109.47478 * 60.00104 * 13 12 11
41 41 H 0.96993 * 120.00225 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0550 1.4371 0.0000
4 6 2.0546 -0.7501 -1.2384
5 1 2.6710 -0.0904 -1.8491
6 8 0.9640 -1.2614 -2.0075
7 6 2.9059 -1.9117 -0.6764
8 6 3.2681 -1.4186 0.7471
9 7 2.0339 -0.7205 1.1892
10 6 2.3212 0.2122 2.2872
11 6 2.7644 -0.5748 3.5222
12 6 2.9358 0.3830 4.7029
13 6 3.3784 -0.4041 5.9380
14 6 3.5479 0.5394 7.1008
15 1 3.3593 1.5949 6.9717
16 6 3.9449 0.0552 8.3293
17 7 4.1750 -1.2301 8.4864
18 14 4.1542 1.2247 9.7708
19 1 3.8356 2.6083 9.3361
20 1 3.2368 0.8265 10.8685
21 1 5.5575 1.1687 10.2537
22 1 -0.3633 0.4950 0.9005
23 1 -0.3634 0.5325 -0.8790
24 1 -0.3633 -1.0275 -0.0216
25 1 3.1413 1.4271 0.0893
26 1 1.7714 1.9275 -0.9312
27 1 1.6262 1.9805 0.8420
28 1 1.2348 -1.7806 -2.7770
29 1 3.8052 -2.0557 -1.2751
30 1 2.3214 -2.8305 -0.6291
31 1 4.1098 -0.7268 0.7120
32 1 3.4888 -2.2616 1.4018
33 1 3.1166 0.8939 1.9861
34 1 1.4233 0.7832 2.5233
35 1 2.0094 -1.3220 3.7671
36 1 3.7129 -1.0707 3.3159
37 1 3.6908 1.1301 4.4579
38 1 1.9874 0.8789 4.9092
39 1 2.6232 -1.1509 6.1827
40 1 4.3268 -0.9004 5.7321
41 1 4.4539 -1.5707 9.3507
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385315042.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:51
Heat of formation + Delta-G solvation = -67.574289 kcal
Electronic energy + Delta-G solvation = -17844.221280 eV
Core-core repulsion = 15144.184213 eV
Total energy + Delta-G solvation = -2700.037067 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.18271 -36.51292 -34.62062 -32.65762 -32.40293 -30.59269 -27.65309 -27.32245
-25.00093 -24.36073 -22.30600 -20.88403 -19.84023 -18.72223 -17.49573 -16.20289
-15.98368 -15.22343 -15.02628 -14.67824 -14.42061 -13.81885 -13.40205 -13.30295
-12.79831 -12.52565 -12.37850 -12.02448 -11.85437 -11.66564 -11.51975 -11.32996
-11.16110 -11.06467 -10.91507 -10.58420 -10.43614 -10.40733 -10.29204 -10.10415
-9.58205 -9.22214 -8.95907 -8.31995 -8.29652 -5.95389 -3.97407 3.33401
3.40626 3.45035 3.88467 3.96219 4.44115 4.49943 4.53103 4.85845
5.04216 5.12404 5.23513 5.35709 5.39152 5.40587 5.46713 5.54093
5.63717 5.79468 5.85207 5.88879 5.93685 5.96158 5.98109 6.07810
6.18444 6.34846 6.45727 6.57012 6.84946 7.01691 7.03254 7.12559
7.28790 7.44804 7.74408 7.90485 8.06114 8.49069 9.10407 9.66363
11.16042
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.051939 B = 0.003892 C = 0.003764
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 538.963549 B = 7191.772609 C = 7436.168970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C 0.093 3.907
3 C -0.171 4.171
4 C 0.102 3.898
5 H 0.060 0.940
6 O -0.555 6.555
7 C -0.158 4.158
8 C 0.036 3.964
9 N -0.505 5.505
10 C 0.046 3.954
11 C -0.113 4.113
12 C -0.108 4.108
13 C 0.021 3.979
14 C -0.519 4.519
15 H 0.054 0.946
16 C 0.055 3.945
17 N -0.896 5.896
18 Si 0.890 3.110
19 H -0.273 1.273
20 H -0.284 1.284
21 H -0.284 1.284
22 H 0.050 0.950
23 H 0.055 0.945
24 H 0.065 0.935
25 H 0.056 0.944
26 H 0.059 0.941
27 H 0.069 0.931
28 H 0.373 0.627
29 H 0.071 0.929
30 H 0.084 0.916
31 H 0.045 0.955
32 H 0.088 0.912
33 H 0.037 0.963
34 H 0.073 0.927
35 H 0.065 0.935
36 H 0.053 0.947
37 H 0.044 0.956
38 H 0.047 0.953
39 H 0.016 0.984
40 H 0.014 0.986
41 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.425 0.940 -21.582 21.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.003 3.997
3 C -0.229 4.229
4 C 0.043 3.957
5 H 0.078 0.922
6 O -0.360 6.360
7 C -0.196 4.196
8 C -0.092 4.092
9 N -0.229 5.229
10 C -0.081 4.081
11 C -0.151 4.151
12 C -0.147 4.147
13 C -0.016 4.016
14 C -0.557 4.557
15 H 0.073 0.927
16 C -0.146 4.146
17 N -0.536 5.536
18 Si 0.718 3.282
19 H -0.198 1.198
20 H -0.210 1.210
21 H -0.211 1.211
22 H 0.069 0.931
23 H 0.074 0.926
24 H 0.084 0.916
25 H 0.075 0.925
26 H 0.078 0.922
27 H 0.088 0.912
28 H 0.220 0.780
29 H 0.090 0.910
30 H 0.103 0.897
31 H 0.063 0.937
32 H 0.106 0.894
33 H 0.055 0.945
34 H 0.091 0.909
35 H 0.083 0.917
36 H 0.072 0.928
37 H 0.062 0.938
38 H 0.065 0.935
39 H 0.034 0.966
40 H 0.032 0.968
41 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -4.115 0.767 -20.787 21.204
hybrid contribution 1.252 0.871 0.229 1.542
sum -2.863 1.638 -20.557 20.820
Atomic orbital electron populations
1.21415 0.92434 1.02675 1.00442 1.21765 0.97327 0.91591 0.88996
1.22445 1.01130 0.96599 1.02729 1.22685 0.87069 0.94104 0.91887
0.92195 1.86592 1.33412 1.72921 1.43055 1.23259 1.00007 0.99557
0.96814 1.23148 0.91858 0.98992 0.95184 1.64952 1.26258 1.26414
1.05265 1.22463 1.00002 0.94272 0.91387 1.21650 1.00786 0.98997
0.93693 1.21591 0.99995 0.97754 0.95320 1.19094 0.96378 0.95274
0.90875 1.21335 1.45167 0.94264 0.94946 0.92732 1.25035 0.95626
0.95040 0.98855 1.69977 1.47180 1.12432 1.23991 0.86561 0.77661
0.81267 0.82669 1.19771 1.21017 1.21067 0.93144 0.92643 0.91581
0.92524 0.92169 0.91214 0.77995 0.91043 0.89711 0.93657 0.89411
0.94513 0.90866 0.91657 0.92831 0.93766 0.93465 0.96596 0.96786
0.93128
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.37 7.90 37.16 0.29 -1.07 16
2 C 0.09 1.10 0.89 -130.53 -0.12 0.98 16
3 C -0.17 -1.83 6.99 37.16 0.26 -1.57 16
4 C 0.10 1.02 3.96 -25.37 -0.10 0.92 16
5 H 0.06 0.53 7.69 -51.93 -0.40 0.13 16
6 O -0.56 -5.32 11.48 -35.23 -0.40 -5.72 16
7 C -0.16 -1.54 6.80 -24.87 -0.17 -1.70 16
8 C 0.04 0.44 5.65 -1.90 -0.01 0.43 16
9 N -0.50 -6.90 4.92 -215.00 -1.06 -7.95 16
10 C 0.05 0.69 3.65 -3.82 -0.01 0.67 16
11 C -0.11 -2.01 5.09 -26.73 -0.14 -2.15 16
12 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16
13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16
14 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16
15 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16
16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
17 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16
18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16
19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
23 H 0.05 0.63 8.00 -51.93 -0.42 0.21 16
24 H 0.07 0.88 7.73 -51.93 -0.40 0.48 16
25 H 0.06 0.61 7.39 -51.93 -0.38 0.22 16
26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
27 H 0.07 0.78 6.88 -51.93 -0.36 0.42 16
28 H 0.37 1.96 9.11 45.56 0.41 2.37 16
29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16
31 H 0.05 0.54 7.92 -51.93 -0.41 0.13 16
32 H 0.09 1.11 7.83 -51.93 -0.41 0.71 16
33 H 0.04 0.53 6.34 -51.93 -0.33 0.20 16
34 H 0.07 1.09 7.61 -51.93 -0.40 0.70 16
35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
36 H 0.05 0.95 7.36 -51.93 -0.38 0.56 16
37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
40 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16
41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 319.30 15.07 4.81 4.81
Total: -1.00 -31.75 319.30 -8.42 -40.17
By element:
Atomic # 1 Polarization: 4.68 SS G_CDS: -6.81 Total: -2.13 kcal
Atomic # 6 Polarization: -18.72 SS G_CDS: -0.68 Total: -19.40 kcal
Atomic # 7 Polarization: -34.43 SS G_CDS: -0.32 Total: -34.75 kcal
Atomic # 8 Polarization: -5.32 SS G_CDS: -0.40 Total: -5.72 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 4.81 Total: 4.81 kcal
Total: -31.75 -8.42 -40.17 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385315042.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.401 kcal
(2) G-P(sol) polarization free energy of solvation -31.749 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.574 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds