Wall clock time and date at job start Mon Mar 30 2020 03:24:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.52999 * 110.06596 * 2 1
4 4 C 1.53992 * 109.91369 * 238.79734 * 2 1 3
5 5 H 1.08999 * 110.39191 * 120.46531 * 4 2 1
6 6 O 1.42906 * 110.31370 * 358.33733 * 4 2 1
7 7 C 1.54600 * 105.14089 * 239.42140 * 4 2 1
8 8 C 1.54936 * 102.91773 * 338.04564 * 7 4 2
9 9 N 1.47892 * 109.91723 * 121.20787 * 2 1 3
10 10 C 1.46901 * 111.00032 * 265.19717 * 9 2 1
11 11 C 1.53005 * 109.47225 * 176.86115 * 10 9 2
12 12 C 1.52998 * 109.46729 * 185.31407 * 11 10 9
13 13 C 1.53005 * 109.46729 * 179.97438 * 12 11 10
14 14 C 1.50703 * 109.47041 * 179.97438 * 13 12 11
15 15 H 1.07996 * 119.99791 * 359.97438 * 14 13 12
16 16 C 1.37881 * 119.99840 * 180.02562 * 14 13 12
17 17 N 1.31511 * 120.00237 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 119.99629 * 180.02562 * 16 14 13
19 19 H 1.48490 * 109.47455 * 359.97438 * 18 16 14
20 20 H 1.48498 * 109.47052 * 119.99993 * 18 16 14
21 21 H 1.48505 * 109.46791 * 239.99466 * 18 16 14
22 22 H 1.08995 * 109.47072 * 298.79625 * 1 2 3
23 23 H 1.09003 * 109.47240 * 58.79279 * 1 2 3
24 24 H 1.09002 * 109.47113 * 178.79454 * 1 2 3
25 25 H 1.08995 * 109.47150 * 175.01568 * 3 2 1
26 26 H 1.09000 * 109.47025 * 295.02117 * 3 2 1
27 27 H 1.09005 * 109.46880 * 55.01609 * 3 2 1
28 28 H 0.96699 * 113.99985 * 182.83095 * 6 4 2
29 29 H 1.08993 * 110.72472 * 219.69178 * 7 4 2
30 30 H 1.08998 * 110.72131 * 96.39871 * 7 4 2
31 31 H 1.09005 * 110.66782 * 278.97731 * 8 7 4
32 32 H 1.09001 * 110.66991 * 155.84635 * 8 7 4
33 33 H 1.09000 * 109.46825 * 296.85759 * 10 9 2
34 34 H 1.08999 * 109.47385 * 56.86079 * 10 9 2
35 35 H 1.09004 * 109.47049 * 305.31067 * 11 10 9
36 36 H 1.08997 * 109.46832 * 65.31415 * 11 10 9
37 37 H 1.09004 * 109.47077 * 299.99643 * 12 11 10
38 38 H 1.08994 * 109.47753 * 59.99989 * 12 11 10
39 39 H 1.08994 * 109.47128 * 299.99662 * 13 12 11
40 40 H 1.09004 * 109.47478 * 60.00104 * 13 12 11
41 41 H 0.96993 * 120.00225 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0550 1.4371 0.0000
4 6 2.0546 -0.7501 -1.2384
5 1 2.6710 -0.0904 -1.8491
6 8 0.9640 -1.2614 -2.0075
7 6 2.9059 -1.9117 -0.6764
8 6 3.2681 -1.4186 0.7471
9 7 2.0339 -0.7205 1.1892
10 6 2.3212 0.2122 2.2872
11 6 2.7644 -0.5748 3.5222
12 6 2.9358 0.3830 4.7029
13 6 3.3784 -0.4041 5.9380
14 6 3.5479 0.5394 7.1008
15 1 3.3593 1.5949 6.9717
16 6 3.9449 0.0552 8.3293
17 7 4.1750 -1.2301 8.4864
18 14 4.1542 1.2247 9.7708
19 1 3.8356 2.6083 9.3361
20 1 3.2368 0.8265 10.8685
21 1 5.5575 1.1687 10.2537
22 1 -0.3633 0.4950 0.9005
23 1 -0.3634 0.5325 -0.8790
24 1 -0.3633 -1.0275 -0.0216
25 1 3.1413 1.4271 0.0893
26 1 1.7714 1.9275 -0.9312
27 1 1.6262 1.9805 0.8420
28 1 1.2348 -1.7806 -2.7770
29 1 3.8052 -2.0557 -1.2751
30 1 2.3214 -2.8305 -0.6291
31 1 4.1098 -0.7268 0.7120
32 1 3.4888 -2.2616 1.4018
33 1 3.1166 0.8939 1.9861
34 1 1.4233 0.7832 2.5233
35 1 2.0094 -1.3220 3.7671
36 1 3.7129 -1.0707 3.3159
37 1 3.6908 1.1301 4.4579
38 1 1.9874 0.8789 4.9092
39 1 2.6232 -1.1509 6.1827
40 1 4.3268 -0.9004 5.7321
41 1 4.4539 -1.5707 9.3507
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385315042.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:51
Heat of formation + Delta-G solvation = -89.701211 kcal
Electronic energy + Delta-G solvation = -17845.180775 eV
Core-core repulsion = 15144.184213 eV
Total energy + Delta-G solvation = -2700.996562 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.09577 -37.48785 -36.24624 -34.49434 -33.34428 -32.03996 -29.21693 -28.30153
-26.15698 -25.83348 -23.61575 -22.32559 -21.33250 -19.68456 -18.43555 -18.22213
-16.96945 -16.54933 -16.33967 -16.15480 -15.59526 -14.89833 -14.56037 -14.40960
-14.26852 -13.90530 -13.68499 -13.31412 -13.18130 -12.98973 -12.79557 -12.59235
-12.49251 -12.38580 -12.14138 -12.07865 -12.00381 -11.83203 -11.36703 -11.32042
-11.28698 -10.97936 -10.82687 -10.56403 -9.33109 -8.20205 -6.31824 1.39367
1.40007 1.53585 2.40717 2.91080 3.12523 3.24477 3.59323 3.70746
4.05181 4.09021 4.19406 4.20328 4.29866 4.46522 4.51789 4.57848
4.60447 4.63917 4.77472 4.82984 4.86827 4.95854 5.00048 5.00359
5.07707 5.13916 5.19970 5.23999 5.28135 5.35512 5.51055 5.54670
5.76665 5.86187 6.03345 6.13963 6.25621 6.85789 6.95164 7.37608
8.92014
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.051939 B = 0.003892 C = 0.003764
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 538.963549 B = 7191.772609 C = 7436.168970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.085 3.915
3 C -0.167 4.167
4 C 0.107 3.893
5 H 0.079 0.921
6 O -0.569 6.569
7 C -0.149 4.149
8 C 0.030 3.970
9 N -0.522 5.522
10 C 0.059 3.941
11 C -0.102 4.102
12 C -0.095 4.095
13 C 0.023 3.977
14 C -0.544 4.544
15 H 0.060 0.940
16 C -0.003 4.003
17 N -0.935 5.935
18 Si 0.967 3.033
19 H -0.261 1.261
20 H -0.278 1.278
21 H -0.277 1.277
22 H 0.041 0.959
23 H 0.064 0.936
24 H 0.049 0.951
25 H 0.058 0.942
26 H 0.075 0.925
27 H 0.061 0.939
28 H 0.393 0.607
29 H 0.096 0.904
30 H 0.077 0.923
31 H 0.050 0.950
32 H 0.074 0.926
33 H 0.046 0.954
34 H 0.071 0.929
35 H 0.050 0.950
36 H 0.051 0.949
37 H 0.051 0.949
38 H 0.049 0.951
39 H -0.013 1.013
40 H -0.011 1.011
41 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.159 2.313 -22.772 23.106
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.005 4.005
3 C -0.225 4.225
4 C 0.047 3.953
5 H 0.097 0.903
6 O -0.377 6.377
7 C -0.187 4.187
8 C -0.098 4.098
9 N -0.247 5.247
10 C -0.069 4.069
11 C -0.140 4.140
12 C -0.134 4.134
13 C -0.014 4.014
14 C -0.582 4.582
15 H 0.078 0.922
16 C -0.200 4.200
17 N -0.575 5.575
18 Si 0.791 3.209
19 H -0.185 1.185
20 H -0.203 1.203
21 H -0.202 1.202
22 H 0.060 0.940
23 H 0.083 0.917
24 H 0.068 0.932
25 H 0.077 0.923
26 H 0.094 0.906
27 H 0.080 0.920
28 H 0.243 0.757
29 H 0.115 0.885
30 H 0.096 0.904
31 H 0.068 0.932
32 H 0.092 0.908
33 H 0.065 0.935
34 H 0.090 0.910
35 H 0.069 0.931
36 H 0.070 0.930
37 H 0.070 0.930
38 H 0.068 0.932
39 H 0.006 0.994
40 H 0.008 0.992
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -3.853 2.135 -22.009 22.445
hybrid contribution 1.147 0.373 0.575 1.336
sum -2.705 2.508 -21.434 21.749
Atomic orbital electron populations
1.21359 0.93023 1.01625 1.00473 1.21886 0.96905 0.92502 0.89166
1.22397 1.01100 0.95744 1.03288 1.22624 0.87096 0.94160 0.91399
0.90301 1.86546 1.33667 1.73414 1.44063 1.23223 1.00943 0.99103
0.95439 1.23204 0.91484 0.98574 0.96530 1.64862 1.27221 1.26607
1.05981 1.22222 1.00095 0.93966 0.90601 1.21464 1.00376 0.98175
0.93988 1.21393 1.00015 0.97748 0.94199 1.19020 0.94346 0.94904
0.93124 1.21770 1.45460 0.94876 0.96083 0.92157 1.26030 0.94981
0.96882 1.02155 1.70112 1.47804 1.14563 1.25050 0.85369 0.77890
0.79145 0.78463 1.18501 1.20329 1.20238 0.93967 0.91669 0.93155
0.92314 0.90590 0.91972 0.75743 0.88543 0.90402 0.93185 0.90757
0.93548 0.91016 0.93137 0.93012 0.92990 0.93179 0.99422 0.99227
0.92772
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -2.51 7.90 71.98 0.57 -1.94 16
2 C 0.08 1.87 0.89 3.67 0.00 1.87 16
3 C -0.17 -3.22 6.99 71.98 0.50 -2.72 16
4 C 0.11 1.86 3.96 31.47 0.12 1.98 16
5 H 0.08 1.11 7.69 -2.39 -0.02 1.09 16
6 O -0.57 -9.56 11.48 -148.98 -1.71 -11.27 16
7 C -0.15 -2.57 6.80 31.80 0.22 -2.36 16
8 C 0.03 0.69 5.65 86.65 0.49 1.18 16
9 N -0.52 -13.85 4.92 -834.12 -4.10 -17.95 16
10 C 0.06 1.71 3.65 86.30 0.31 2.03 16
11 C -0.10 -3.67 5.09 30.60 0.16 -3.51 16
12 C -0.10 -4.07 5.15 30.60 0.16 -3.91 16
13 C 0.02 1.28 4.97 29.85 0.15 1.43 16
14 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16
15 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16
16 C 0.00 -0.18 5.46 84.66 0.46 0.28 16
17 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16
18 Si 0.97 45.13 29.54 68.60 2.03 47.16 16
19 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16
20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16
21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16
23 H 0.06 1.37 8.00 -2.39 -0.02 1.35 16
24 H 0.05 1.32 7.73 -2.39 -0.02 1.30 16
25 H 0.06 1.11 7.39 -2.39 -0.02 1.09 16
26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
27 H 0.06 1.28 6.88 -2.38 -0.02 1.27 16
28 H 0.39 3.05 9.11 -74.06 -0.67 2.38 16
29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16
30 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16
31 H 0.05 1.11 7.92 -2.38 -0.02 1.09 16
32 H 0.07 1.89 7.83 -2.39 -0.02 1.87 16
33 H 0.05 1.26 6.34 -2.39 -0.02 1.24 16
34 H 0.07 2.09 7.61 -2.39 -0.02 2.07 16
35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16
36 H 0.05 1.86 7.36 -2.39 -0.02 1.84 16
37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16
38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16
39 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16
40 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16
41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16
Total: -1.00 -68.36 319.30 0.18 -68.18
By element:
Atomic # 1 Polarization: 9.15 SS G_CDS: 0.30 Total: 9.45 kcal
Atomic # 6 Polarization: -40.82 SS G_CDS: 3.38 Total: -37.44 kcal
Atomic # 7 Polarization: -72.26 SS G_CDS: -3.82 Total: -76.07 kcal
Atomic # 8 Polarization: -9.56 SS G_CDS: -1.71 Total: -11.27 kcal
Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal
Total: -68.36 0.18 -68.18 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385315042.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.519 kcal
(2) G-P(sol) polarization free energy of solvation -68.360 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.879 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.182 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.701 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds