Wall clock time and date at job start Mon Mar 30 2020 03:24:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 110.06941 * 2 1
4 4 C 1.53994 * 109.91972 * 238.79112 * 2 1 3
5 5 H 1.09001 * 110.30463 * 0.79571 * 4 2 1
6 6 O 1.42903 * 110.30602 * 122.95765 * 4 2 1
7 7 C 1.54589 * 105.14343 * 241.87498 * 4 2 1
8 8 C 1.54942 * 102.92033 * 21.95784 * 7 4 2
9 9 N 1.47907 * 109.91492 * 121.20552 * 2 1 3
10 10 C 1.46898 * 110.99750 * 333.50616 * 9 2 1
11 11 C 1.53009 * 109.46595 * 183.35506 * 10 9 2
12 12 C 1.52998 * 109.46547 * 181.10039 * 11 10 9
13 13 C 1.52999 * 109.47062 * 179.97438 * 12 11 10
14 14 C 1.50705 * 109.47503 * 180.02562 * 13 12 11
15 15 H 1.07997 * 119.99647 * 0.02562 * 14 13 12
16 16 C 1.37878 * 120.00252 * 180.02562 * 14 13 12
17 17 N 1.31511 * 119.99961 * 179.97438 * 16 14 13
18 18 Si 1.86805 * 119.99816 * 359.97438 * 16 14 13
19 19 H 1.48500 * 109.46658 * 90.00106 * 18 16 14
20 20 H 1.48490 * 109.47153 * 210.00091 * 18 16 14
21 21 H 1.48495 * 109.47248 * 330.00404 * 18 16 14
22 22 H 1.09000 * 109.46896 * 303.70306 * 1 2 3
23 23 H 1.08999 * 109.46806 * 63.69822 * 1 2 3
24 24 H 1.08993 * 109.47381 * 183.70032 * 1 2 3
25 25 H 1.09004 * 109.47423 * 181.20408 * 3 2 1
26 26 H 1.08998 * 109.47574 * 301.20432 * 3 2 1
27 27 H 1.08999 * 109.47179 * 61.20706 * 3 2 1
28 28 H 0.96705 * 113.99549 * 180.02562 * 6 4 2
29 29 H 1.08997 * 110.72637 * 263.59585 * 7 4 2
30 30 H 1.09001 * 110.72545 * 140.31292 * 7 4 2
31 31 H 1.09006 * 110.66365 * 204.14944 * 8 7 4
32 32 H 1.08997 * 110.66531 * 81.02339 * 8 7 4
33 33 H 1.08996 * 109.47260 * 303.35367 * 10 9 2
34 34 H 1.08998 * 109.47340 * 63.35690 * 10 9 2
35 35 H 1.08992 * 109.46916 * 301.09477 * 11 10 9
36 36 H 1.09000 * 109.47121 * 61.10652 * 11 10 9
37 37 H 1.09000 * 109.47436 * 300.00108 * 12 11 10
38 38 H 1.08999 * 109.47378 * 60.00231 * 12 11 10
39 39 H 1.09000 * 109.47159 * 300.00370 * 13 12 11
40 40 H 1.09002 * 109.47269 * 59.99911 * 13 12 11
41 41 H 0.97002 * 119.99623 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0550 1.4371 0.0000
4 6 2.0546 -0.7502 -1.2383
5 1 1.2225 -1.1028 -1.8477
6 8 2.9091 0.0987 -2.0073
7 6 2.8536 -1.9483 -0.6761
8 6 2.2659 -2.1193 0.7473
9 7 2.0338 -0.7205 1.1894
10 6 1.0591 -0.6702 2.2873
11 6 1.6484 -1.3519 3.5239
12 6 0.6228 -1.3238 4.6589
13 6 1.2117 -2.0059 5.8954
14 6 0.2013 -1.9789 7.0133
15 1 -0.7644 -1.5213 6.8572
16 6 0.5099 -2.5382 8.2351
17 7 -0.3717 -2.5142 9.2107
18 14 2.1801 -3.3303 8.5047
19 1 3.1354 -2.3114 9.0091
20 1 2.0537 -4.4257 9.4992
21 1 2.6788 -3.8832 7.2199
22 1 -0.3633 0.5702 0.8549
23 1 -0.3633 0.4554 -0.9213
24 1 -0.3634 -1.0254 0.0663
25 1 3.1448 1.4258 -0.0216
26 1 1.6796 1.9611 -0.8789
27 1 1.7148 1.9482 0.9006
28 1 3.2694 -0.3206 -2.8007
29 1 3.9171 -1.7146 -0.6289
30 1 2.6803 -2.8425 -1.2749
31 1 2.9821 -2.6159 1.4020
32 1 1.3274 -2.6725 0.7121
33 1 0.8280 0.3690 2.5207
34 1 0.1472 -1.1867 1.9876
35 1 1.8975 -2.3857 3.2849
36 1 2.5494 -0.8235 3.8353
37 1 0.3735 -0.2899 4.8980
38 1 -0.2783 -1.8521 4.3476
39 1 1.4606 -3.0398 5.6561
40 1 2.1130 -1.4780 6.2070
41 1 -0.1547 -2.9080 10.0702
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385315043.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:54
Heat of formation + Delta-G solvation = -64.005791 kcal
Electronic energy + Delta-G solvation = -17901.078480 eV
Core-core repulsion = 15201.196155 eV
Total energy + Delta-G solvation = -2699.882325 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.23481 -36.57513 -34.74820 -32.65157 -32.43252 -30.83690 -28.00589 -27.42199
-25.05378 -24.40260 -22.25456 -20.73293 -19.93821 -18.76225 -17.56853 -16.62983
-16.01380 -15.29513 -15.14068 -14.73899 -14.16204 -13.87260 -13.49008 -13.35441
-12.94947 -12.65066 -12.41993 -12.19325 -11.91880 -11.88886 -11.61586 -11.46992
-11.21133 -11.19163 -10.97398 -10.73272 -10.57363 -10.37734 -10.14640 -9.84487
-9.63327 -9.44189 -9.11498 -8.49683 -8.37427 -6.00473 -3.97867 3.34138
3.40959 3.45633 3.82932 3.91635 4.39327 4.48413 4.49242 4.81258
4.99783 5.08915 5.18350 5.30160 5.32639 5.34658 5.41935 5.46284
5.59466 5.74145 5.80238 5.81687 5.87776 5.90162 5.92540 6.01272
6.09623 6.21150 6.37959 6.46439 6.69747 6.81194 6.94693 6.96738
7.15540 7.38215 7.40799 7.51152 7.85020 8.59061 9.04912 9.62729
11.13202
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.045300 B = 0.004226 C = 0.004045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 617.956641 B = 6624.660535 C = 6921.241401
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.093 3.907
3 C -0.112 4.112
4 C 0.102 3.898
5 H 0.061 0.939
6 O -0.555 6.555
7 C -0.158 4.158
8 C 0.036 3.964
9 N -0.505 5.505
10 C 0.046 3.954
11 C -0.116 4.116
12 C -0.101 4.101
13 C -0.014 4.014
14 C -0.519 4.519
15 H 0.070 0.930
16 C 0.064 3.936
17 N -0.906 5.906
18 Si 0.881 3.119
19 H -0.277 1.277
20 H -0.289 1.289
21 H -0.266 1.266
22 H 0.070 0.930
23 H 0.060 0.940
24 H 0.056 0.944
25 H 0.065 0.935
26 H 0.055 0.945
27 H 0.050 0.950
28 H 0.373 0.627
29 H 0.084 0.916
30 H 0.071 0.929
31 H 0.086 0.914
32 H 0.046 0.954
33 H 0.074 0.926
34 H 0.039 0.961
35 H 0.054 0.946
36 H 0.064 0.936
37 H 0.053 0.947
38 H 0.050 0.950
39 H 0.013 0.987
40 H 0.011 0.989
41 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.418 2.794 -23.575 24.350
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.004 3.996
3 C -0.170 4.170
4 C 0.042 3.958
5 H 0.079 0.921
6 O -0.359 6.359
7 C -0.196 4.196
8 C -0.092 4.092
9 N -0.230 5.230
10 C -0.082 4.082
11 C -0.154 4.154
12 C -0.139 4.139
13 C -0.051 4.051
14 C -0.557 4.557
15 H 0.089 0.911
16 C -0.136 4.136
17 N -0.545 5.545
18 Si 0.708 3.292
19 H -0.203 1.203
20 H -0.215 1.215
21 H -0.190 1.190
22 H 0.089 0.911
23 H 0.079 0.921
24 H 0.075 0.925
25 H 0.084 0.916
26 H 0.074 0.926
27 H 0.069 0.931
28 H 0.220 0.780
29 H 0.103 0.897
30 H 0.090 0.910
31 H 0.105 0.895
32 H 0.064 0.936
33 H 0.092 0.908
34 H 0.057 0.943
35 H 0.073 0.927
36 H 0.083 0.917
37 H 0.071 0.929
38 H 0.069 0.931
39 H 0.032 0.968
40 H 0.029 0.971
41 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 5.714 3.410 -22.707 23.661
hybrid contribution 0.107 -1.333 -0.348 1.382
sum 5.820 2.077 -23.055 23.869
Atomic orbital electron populations
1.22450 0.95554 1.02105 1.02853 1.21763 0.92794 0.96150 0.88940
1.21413 1.02076 0.92988 1.00494 1.22677 0.91717 0.89430 0.91944
0.92142 1.86597 1.66793 1.41952 1.40596 1.23247 1.01495 0.98097
0.96740 1.23150 1.00017 0.90845 0.95213 1.64935 1.42566 1.10123
1.05328 1.22445 0.93159 1.01281 0.91275 1.21685 0.99857 0.99801
0.94070 1.21420 0.97134 1.00701 0.94662 1.19565 0.96553 0.95387
0.93598 1.21197 1.01651 1.37576 0.95310 0.91146 1.25048 0.96903
0.95692 0.95982 1.69923 1.34956 1.46102 1.03563 0.86758 0.84874
0.79394 0.78150 1.20289 1.21467 1.19038 0.91138 0.92110 0.92515
0.91607 0.92595 0.93133 0.77989 0.89740 0.91042 0.89522 0.93577
0.90752 0.94292 0.92724 0.91742 0.92867 0.93128 0.96827 0.97085
0.92819
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.78 7.00 37.16 0.26 -1.52 16
2 C 0.09 1.06 0.89 -130.53 -0.12 0.94 16
3 C -0.11 -1.32 7.90 37.16 0.29 -1.02 16
4 C 0.10 0.98 3.97 -25.38 -0.10 0.88 16
5 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16
6 O -0.55 -5.10 11.48 -35.23 -0.40 -5.51 16
7 C -0.16 -1.46 6.80 -24.87 -0.17 -1.63 16
8 C 0.04 0.41 5.64 -1.90 -0.01 0.40 16
9 N -0.51 -6.58 4.91 -215.00 -1.06 -7.63 16
10 C 0.05 0.65 3.63 -3.82 -0.01 0.64 16
11 C -0.12 -1.93 5.22 -26.73 -0.14 -2.07 16
12 C -0.10 -2.04 5.15 -26.73 -0.14 -2.17 16
13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16
14 C -0.52 -15.22 9.66 -34.44 -0.33 -15.56 16
15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16
16 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16
17 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16
18 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16
19 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16
20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
21 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16
22 H 0.07 0.77 6.79 -51.93 -0.35 0.41 16
23 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
24 H 0.06 0.59 7.47 -51.93 -0.39 0.20 16
25 H 0.06 0.85 7.73 -51.93 -0.40 0.45 16
26 H 0.06 0.61 8.00 -51.93 -0.42 0.19 16
27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
28 H 0.37 1.81 9.12 45.56 0.42 2.23 16
29 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16
30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
31 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16
32 H 0.05 0.52 7.91 -51.93 -0.41 0.11 16
33 H 0.07 1.06 7.59 -51.93 -0.39 0.66 16
34 H 0.04 0.54 6.38 -51.93 -0.33 0.20 16
35 H 0.05 0.89 7.05 -51.93 -0.37 0.53 16
36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
39 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16
40 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16
41 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16
LS Contribution 315.35 15.07 4.75 4.75
Total: -1.00 -32.15 315.35 -8.03 -40.18
By element:
Atomic # 1 Polarization: 4.85 SS G_CDS: -6.75 Total: -1.90 kcal
Atomic # 6 Polarization: -19.06 SS G_CDS: -0.68 Total: -19.74 kcal
Atomic # 7 Polarization: -35.10 SS G_CDS: -0.28 Total: -35.38 kcal
Atomic # 8 Polarization: -5.10 SS G_CDS: -0.40 Total: -5.51 kcal
Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -32.15 -8.03 -40.18 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385315043.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.826 kcal
(2) G-P(sol) polarization free energy of solvation -32.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.973 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.006 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds