Wall clock time and date at job start Mon Mar 30 2020 03:24:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 110.06941 * 2 1
4 4 C 1.53994 * 109.91972 * 238.79112 * 2 1 3
5 5 H 1.09001 * 110.30463 * 0.79571 * 4 2 1
6 6 O 1.42903 * 110.30602 * 122.95765 * 4 2 1
7 7 C 1.54589 * 105.14343 * 241.87498 * 4 2 1
8 8 C 1.54942 * 102.92033 * 21.95784 * 7 4 2
9 9 N 1.47907 * 109.91492 * 121.20552 * 2 1 3
10 10 C 1.46898 * 110.99750 * 333.50616 * 9 2 1
11 11 C 1.53009 * 109.46595 * 183.35506 * 10 9 2
12 12 C 1.52998 * 109.46547 * 181.10039 * 11 10 9
13 13 C 1.52999 * 109.47062 * 179.97438 * 12 11 10
14 14 C 1.50705 * 109.47503 * 180.02562 * 13 12 11
15 15 H 1.07997 * 119.99647 * 0.02562 * 14 13 12
16 16 C 1.37878 * 120.00252 * 180.02562 * 14 13 12
17 17 N 1.31511 * 119.99961 * 179.97438 * 16 14 13
18 18 Si 1.86805 * 119.99816 * 359.97438 * 16 14 13
19 19 H 1.48500 * 109.46658 * 90.00106 * 18 16 14
20 20 H 1.48490 * 109.47153 * 210.00091 * 18 16 14
21 21 H 1.48495 * 109.47248 * 330.00404 * 18 16 14
22 22 H 1.09000 * 109.46896 * 303.70306 * 1 2 3
23 23 H 1.08999 * 109.46806 * 63.69822 * 1 2 3
24 24 H 1.08993 * 109.47381 * 183.70032 * 1 2 3
25 25 H 1.09004 * 109.47423 * 181.20408 * 3 2 1
26 26 H 1.08998 * 109.47574 * 301.20432 * 3 2 1
27 27 H 1.08999 * 109.47179 * 61.20706 * 3 2 1
28 28 H 0.96705 * 113.99549 * 180.02562 * 6 4 2
29 29 H 1.08997 * 110.72637 * 263.59585 * 7 4 2
30 30 H 1.09001 * 110.72545 * 140.31292 * 7 4 2
31 31 H 1.09006 * 110.66365 * 204.14944 * 8 7 4
32 32 H 1.08997 * 110.66531 * 81.02339 * 8 7 4
33 33 H 1.08996 * 109.47260 * 303.35367 * 10 9 2
34 34 H 1.08998 * 109.47340 * 63.35690 * 10 9 2
35 35 H 1.08992 * 109.46916 * 301.09477 * 11 10 9
36 36 H 1.09000 * 109.47121 * 61.10652 * 11 10 9
37 37 H 1.09000 * 109.47436 * 300.00108 * 12 11 10
38 38 H 1.08999 * 109.47378 * 60.00231 * 12 11 10
39 39 H 1.09000 * 109.47159 * 300.00370 * 13 12 11
40 40 H 1.09002 * 109.47269 * 59.99911 * 13 12 11
41 41 H 0.97002 * 119.99623 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0550 1.4371 0.0000
4 6 2.0546 -0.7502 -1.2383
5 1 1.2225 -1.1028 -1.8477
6 8 2.9091 0.0987 -2.0073
7 6 2.8536 -1.9483 -0.6761
8 6 2.2659 -2.1193 0.7473
9 7 2.0338 -0.7205 1.1894
10 6 1.0591 -0.6702 2.2873
11 6 1.6484 -1.3519 3.5239
12 6 0.6228 -1.3238 4.6589
13 6 1.2117 -2.0059 5.8954
14 6 0.2013 -1.9789 7.0133
15 1 -0.7644 -1.5213 6.8572
16 6 0.5099 -2.5382 8.2351
17 7 -0.3717 -2.5142 9.2107
18 14 2.1801 -3.3303 8.5047
19 1 3.1354 -2.3114 9.0091
20 1 2.0537 -4.4257 9.4992
21 1 2.6788 -3.8832 7.2199
22 1 -0.3633 0.5702 0.8549
23 1 -0.3633 0.4554 -0.9213
24 1 -0.3634 -1.0254 0.0663
25 1 3.1448 1.4258 -0.0216
26 1 1.6796 1.9611 -0.8789
27 1 1.7148 1.9482 0.9006
28 1 3.2694 -0.3206 -2.8007
29 1 3.9171 -1.7146 -0.6289
30 1 2.6803 -2.8425 -1.2749
31 1 2.9821 -2.6159 1.4020
32 1 1.3274 -2.6725 0.7121
33 1 0.8280 0.3690 2.5207
34 1 0.1472 -1.1867 1.9876
35 1 1.8975 -2.3857 3.2849
36 1 2.5494 -0.8235 3.8353
37 1 0.3735 -0.2899 4.8980
38 1 -0.2783 -1.8521 4.3476
39 1 1.4606 -3.0398 5.6561
40 1 2.1130 -1.4780 6.2070
41 1 -0.1547 -2.9080 10.0702
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385315043.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:24:53
Heat of formation + Delta-G solvation = -87.125873 kcal
Electronic energy + Delta-G solvation = -17902.081042 eV
Core-core repulsion = 15201.196155 eV
Total energy + Delta-G solvation = -2700.884887 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-41.09495 -37.50306 -36.26314 -34.50849 -33.35040 -32.27346 -29.51453 -28.31591
-26.07248 -25.81616 -23.45490 -22.16388 -21.37976 -19.68049 -18.85537 -18.25396
-16.93560 -16.47094 -16.35991 -16.08815 -15.58943 -14.92589 -14.83722 -14.44358
-14.26706 -13.92947 -13.73785 -13.46832 -13.26503 -13.05822 -12.80844 -12.57510
-12.50414 -12.24789 -12.18869 -12.02110 -11.82494 -11.74296 -11.41228 -11.34916
-11.26235 -11.14092 -10.82480 -10.76785 -9.33628 -8.30150 -6.34214 1.35580
1.37048 1.49714 2.36095 2.90205 3.05211 3.24524 3.59148 3.71060
4.04116 4.09238 4.17793 4.20749 4.29728 4.44817 4.50330 4.55687
4.59194 4.63390 4.74664 4.81108 4.84206 4.94921 4.99316 5.00038
5.06121 5.12740 5.15400 5.19184 5.22333 5.26783 5.50431 5.56866
5.63744 5.67970 6.03357 6.12379 6.28950 6.73884 6.95181 7.30663
8.86888
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.045300 B = 0.004226 C = 0.004045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 617.956641 B = 6624.660535 C = 6921.241401
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.085 3.915
3 C -0.107 4.107
4 C 0.106 3.894
5 H 0.078 0.922
6 O -0.569 6.569
7 C -0.148 4.148
8 C 0.029 3.971
9 N -0.519 5.519
10 C 0.056 3.944
11 C -0.104 4.104
12 C -0.094 4.094
13 C -0.012 4.012
14 C -0.535 4.535
15 H 0.030 0.970
16 C 0.002 3.998
17 N -0.953 5.953
18 Si 0.953 3.047
19 H -0.267 1.267
20 H -0.282 1.282
21 H -0.247 1.247
22 H 0.060 0.940
23 H 0.074 0.926
24 H 0.057 0.943
25 H 0.051 0.949
26 H 0.063 0.937
27 H 0.041 0.959
28 H 0.393 0.607
29 H 0.078 0.922
30 H 0.095 0.905
31 H 0.080 0.920
32 H 0.049 0.951
33 H 0.070 0.930
34 H 0.043 0.957
35 H 0.060 0.940
36 H 0.059 0.941
37 H 0.046 0.954
38 H 0.047 0.953
39 H 0.018 0.982
40 H 0.016 0.984
41 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.980 2.000 -25.582 26.593
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.004 4.004
3 C -0.165 4.165
4 C 0.046 3.954
5 H 0.095 0.905
6 O -0.377 6.377
7 C -0.187 4.187
8 C -0.098 4.098
9 N -0.244 5.244
10 C -0.072 4.072
11 C -0.142 4.142
12 C -0.132 4.132
13 C -0.049 4.049
14 C -0.573 4.573
15 H 0.048 0.952
16 C -0.195 4.195
17 N -0.594 5.594
18 Si 0.776 3.224
19 H -0.192 1.192
20 H -0.208 1.208
21 H -0.170 1.170
22 H 0.079 0.921
23 H 0.093 0.907
24 H 0.076 0.924
25 H 0.070 0.930
26 H 0.082 0.918
27 H 0.060 0.940
28 H 0.243 0.757
29 H 0.097 0.903
30 H 0.113 0.887
31 H 0.098 0.902
32 H 0.067 0.933
33 H 0.088 0.912
34 H 0.061 0.939
35 H 0.079 0.921
36 H 0.078 0.922
37 H 0.065 0.935
38 H 0.066 0.934
39 H 0.037 0.963
40 H 0.034 0.966
41 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 7.282 2.620 -24.752 25.933
hybrid contribution -0.454 -1.029 0.267 1.156
sum 6.828 1.592 -24.485 25.469
Atomic orbital electron populations
1.22402 0.94843 1.02166 1.03189 1.21873 0.93456 0.95810 0.89297
1.21353 1.01076 0.93602 1.00425 1.22617 0.92321 0.89008 0.91442
0.90467 1.86551 1.66899 1.42528 1.41691 1.23208 1.00894 0.99028
0.95523 1.23225 1.00155 0.89917 0.96533 1.64865 1.42279 1.11380
1.05849 1.22237 0.93434 1.00675 0.90891 1.21499 0.98411 1.00487
0.93768 1.21286 0.97882 0.99670 0.94351 1.19533 0.95480 0.96173
0.93714 1.21563 1.01308 1.37157 0.97274 0.95158 1.26063 1.01526
0.96336 0.95534 1.70076 1.37546 1.47429 1.04327 0.85612 0.79245
0.78594 0.78924 1.19171 1.20773 1.17048 0.92094 0.90721 0.92355
0.93004 0.91823 0.93987 0.75747 0.90310 0.88668 0.90208 0.93297
0.91204 0.93865 0.92124 0.92191 0.93527 0.93435 0.96324 0.96606
0.92483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.17 7.00 71.98 0.50 -2.67 16
2 C 0.09 1.78 0.89 3.67 0.00 1.78 16
3 C -0.11 -2.39 7.90 71.98 0.57 -1.82 16
4 C 0.11 1.73 3.97 31.47 0.12 1.86 16
5 H 0.08 1.03 7.68 -2.39 -0.02 1.01 16
6 O -0.57 -9.01 11.48 -148.98 -1.71 -10.72 16
7 C -0.15 -2.34 6.80 31.80 0.22 -2.12 16
8 C 0.03 0.61 5.64 86.65 0.49 1.10 16
9 N -0.52 -12.73 4.91 -834.11 -4.10 -16.82 16
10 C 0.06 1.51 3.63 86.31 0.31 1.82 16
11 C -0.10 -3.32 5.22 30.60 0.16 -3.16 16
12 C -0.09 -3.75 5.15 30.59 0.16 -3.59 16
13 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16
14 C -0.54 -31.98 9.66 25.60 0.25 -31.73 16
15 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16
16 C 0.00 0.11 5.47 84.66 0.46 0.57 16
17 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16
18 Si 0.95 45.42 27.47 68.60 1.88 47.31 16
19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16
20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16
21 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16
22 H 0.06 1.26 6.79 -2.39 -0.02 1.24 16
23 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
24 H 0.06 1.08 7.47 -2.39 -0.02 1.06 16
25 H 0.05 1.29 7.73 -2.39 -0.02 1.27 16
26 H 0.06 1.30 8.00 -2.39 -0.02 1.28 16
27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16
28 H 0.39 2.67 9.12 -74.05 -0.68 2.00 16
29 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16
30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
31 H 0.08 1.76 7.68 -2.38 -0.02 1.74 16
32 H 0.05 1.00 7.91 -2.39 -0.02 0.98 16
33 H 0.07 1.94 7.59 -2.39 -0.02 1.92 16
34 H 0.04 1.13 6.38 -2.39 -0.02 1.12 16
35 H 0.06 1.87 7.05 -2.39 -0.02 1.85 16
36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
37 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
39 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16
40 H 0.02 0.74 7.57 -2.39 -0.02 0.73 16
41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16
Total: -1.00 -69.34 315.35 -0.01 -69.35
By element:
Atomic # 1 Polarization: 9.93 SS G_CDS: 0.25 Total: 10.18 kcal
Atomic # 6 Polarization: -41.77 SS G_CDS: 3.37 Total: -38.40 kcal
Atomic # 7 Polarization: -73.92 SS G_CDS: -3.80 Total: -77.72 kcal
Atomic # 8 Polarization: -9.01 SS G_CDS: -1.71 Total: -10.72 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal
Total: -69.34 -0.01 -69.35 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385315043.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.774 kcal
(2) G-P(sol) polarization free energy of solvation -69.341 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.114 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.126 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds