Wall clock time and date at job start Mon Mar 30 2020 03:18:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86800 * 119.99592 * 2 1
4 4 H 1.48501 * 109.47053 * 239.99918 * 3 2 1
5 5 H 1.48501 * 109.47412 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47205 * 119.99930 * 3 2 1
7 7 C 1.37874 * 120.00425 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00069 * 180.02562 * 7 2 1
9 9 C 1.50696 * 119.99979 * 0.02562 * 7 2 1
10 10 C 1.53005 * 109.47121 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.46799 * 179.97438 * 10 9 7
12 12 C 1.53005 * 109.46799 * 179.97438 * 11 10 9
13 13 N 1.46900 * 109.47060 * 180.02562 * 12 11 10
14 14 C 1.47446 * 111.00255 * 69.87065 * 13 12 11
15 15 C 1.54316 * 107.23320 * 123.25926 * 14 13 12
16 16 C 1.55139 * 103.01810 * 22.28197 * 15 14 13
17 17 C 1.47843 * 110.99888 * 190.71516 * 13 12 11
18 18 H 1.08998 * 110.37465 * 332.46027 * 17 13 12
19 19 C 1.52999 * 110.37447 * 94.80569 * 17 13 12
20 20 C 1.53006 * 109.47020 * 294.99952 * 19 17 13
21 21 O 1.42903 * 109.46938 * 179.97438 * 20 19 17
22 22 H 0.96999 * 120.00585 * 359.97438 * 1 2 3
23 23 H 1.09002 * 109.47660 * 59.99490 * 9 7 2
24 24 H 1.09007 * 109.46899 * 299.99571 * 9 7 2
25 25 H 1.08991 * 109.47338 * 59.99747 * 10 9 7
26 26 H 1.08999 * 109.46924 * 299.99261 * 10 9 7
27 27 H 1.09001 * 109.47272 * 59.99932 * 11 10 9
28 28 H 1.08999 * 109.46904 * 299.99426 * 11 10 9
29 29 H 1.08991 * 109.47338 * 59.99900 * 12 11 10
30 30 H 1.08999 * 109.46924 * 299.99414 * 12 11 10
31 31 H 1.08997 * 109.88511 * 242.66682 * 14 13 12
32 32 H 1.08995 * 109.88851 * 3.68984 * 14 13 12
33 33 H 1.08999 * 110.70589 * 140.66668 * 15 14 13
34 34 H 1.08996 * 110.70709 * 263.73004 * 15 14 13
35 35 H 1.09005 * 110.98834 * 82.44234 * 16 15 14
36 36 H 1.08998 * 110.98952 * 206.25134 * 16 15 14
37 37 H 1.08999 * 109.47035 * 54.99844 * 19 17 13
38 38 H 1.09002 * 109.47224 * 175.00139 * 19 17 13
39 39 H 1.08997 * 109.46751 * 300.00207 * 20 19 17
40 40 H 1.09002 * 109.46969 * 60.00031 * 20 19 17
41 41 H 0.96699 * 113.99408 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1027 1.6965 -1.2125
5 1 1.2840 2.7465 0.0006
6 1 3.1027 1.6966 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0010
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0018
11 6 1.4805 -4.9870 0.0025
12 6 2.4749 -6.1499 0.0031
13 7 1.7405 -7.4222 0.0031
14 6 1.0665 -7.6433 -1.2895
15 6 1.5688 -8.9938 -1.8419
16 6 2.0650 -9.7291 -0.5691
17 6 2.6500 -8.5590 0.2603
18 1 3.6589 -8.3217 -0.0773
19 6 2.6543 -8.9114 1.7492
20 6 3.2439 -7.7467 2.5473
21 8 3.2474 -8.0756 3.9379
22 1 -0.4851 0.8400 0.0004
23 1 0.6247 -2.5571 -0.8896
24 1 0.6242 -2.5567 0.8904
25 1 2.8715 -3.6038 0.8922
26 1 2.8727 -3.6046 -0.8878
27 1 0.8542 -5.0455 -0.8877
28 1 0.8536 -5.0441 0.8923
29 1 3.1015 -6.0917 0.8930
30 1 3.1015 -6.0926 -0.8869
31 1 -0.0129 -7.6809 -1.1432
32 1 1.3189 -6.8399 -1.9815
33 1 0.7544 -9.5446 -2.3124
34 1 2.3869 -8.8419 -2.5459
35 1 1.2359 -10.2037 -0.0442
36 1 2.8374 -10.4577 -0.8153
37 1 1.6332 -9.0991 2.0811
38 1 3.2585 -9.8044 1.9095
39 1 4.2650 -7.5589 2.2153
40 1 2.6398 -6.8537 2.3870
41 1 3.6091 -7.3812 4.5054
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385322479.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:29
Heat of formation + Delta-G solvation = -76.818394 kcal
Electronic energy + Delta-G solvation = -17587.888207 eV
Core-core repulsion = 14887.450286 eV
Total energy + Delta-G solvation = -2700.437921 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.53368 -36.78842 -35.02910 -32.89123 -32.24200 -31.08597 -27.81964 -27.26377
-24.69214 -23.02153 -21.62692 -20.86358 -19.94974 -19.77107 -17.45688 -16.54742
-16.17456 -15.43005 -15.05655 -14.59487 -14.43733 -14.15232 -13.68990 -13.21945
-12.87816 -12.77143 -12.39262 -12.09975 -11.70421 -11.47179 -11.38876 -11.28437
-11.13064 -10.93998 -10.84617 -10.69936 -10.48384 -10.46236 -10.31892 -9.86977
-9.60837 -9.24338 -8.99832 -8.31760 -8.26761 -5.96632 -3.99096 3.34389
3.38777 3.41114 3.91799 4.08794 4.47647 4.52216 4.69527 4.86234
5.01411 5.20141 5.25233 5.27857 5.38573 5.40518 5.42835 5.51628
5.58466 5.68460 5.71743 5.86123 5.90603 5.90857 5.99464 6.09416
6.16096 6.21091 6.30338 6.53621 6.82300 6.98896 7.06093 7.11428
7.28029 7.58312 7.71826 7.88101 8.04330 8.46954 9.08207 9.64665
11.14661
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.027446 B = 0.004346 C = 0.003914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1019.943425 B = 6441.502418 C = 7151.652788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.056 3.944
3 Si 0.891 3.109
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.521 4.521
8 H 0.053 0.947
9 C 0.022 3.978
10 C -0.109 4.109
11 C -0.112 4.112
12 C 0.045 3.955
13 N -0.526 5.526
14 C 0.042 3.958
15 C -0.143 4.143
16 C -0.122 4.122
17 C 0.072 3.928
18 H 0.054 0.946
19 C -0.100 4.100
20 C 0.070 3.930
21 O -0.579 6.579
22 H 0.260 0.740
23 H 0.014 0.986
24 H 0.015 0.985
25 H 0.045 0.955
26 H 0.044 0.956
27 H 0.055 0.945
28 H 0.064 0.936
29 H 0.073 0.927
30 H 0.031 0.969
31 H 0.077 0.923
32 H 0.059 0.941
33 H 0.073 0.927
34 H 0.065 0.935
35 H 0.077 0.923
36 H 0.071 0.929
37 H 0.077 0.923
38 H 0.067 0.933
39 H 0.037 0.963
40 H 0.063 0.937
41 H 0.379 0.621
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.460 -18.985 0.044 19.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.535 5.535
2 C -0.144 4.144
3 Si 0.719 3.281
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.203 1.203
7 C -0.559 4.559
8 H 0.071 0.929
9 C -0.015 4.015
10 C -0.147 4.147
11 C -0.150 4.150
12 C -0.083 4.083
13 N -0.250 5.250
14 C -0.086 4.086
15 C -0.181 4.181
16 C -0.160 4.160
17 C -0.037 4.037
18 H 0.072 0.928
19 C -0.138 4.138
20 C -0.008 4.008
21 O -0.385 6.385
22 H 0.070 0.930
23 H 0.033 0.967
24 H 0.034 0.966
25 H 0.064 0.936
26 H 0.062 0.938
27 H 0.074 0.926
28 H 0.082 0.918
29 H 0.092 0.908
30 H 0.049 0.951
31 H 0.095 0.905
32 H 0.078 0.922
33 H 0.092 0.908
34 H 0.083 0.917
35 H 0.095 0.905
36 H 0.089 0.911
37 H 0.095 0.905
38 H 0.085 0.915
39 H 0.056 0.944
40 H 0.081 0.919
41 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges 4.669 -19.378 0.203 19.933
hybrid contribution 1.328 1.573 -0.522 2.124
sum 5.998 -17.804 -0.320 18.790
Atomic orbital electron populations
1.69955 1.06046 1.26634 1.50897 1.25024 0.94830 0.99186 0.95408
0.86679 0.79599 0.83264 0.78569 1.20298 1.21281 1.20273 1.21248
0.92942 0.91243 1.50512 0.92873 1.19080 0.94002 0.91288 0.97153
1.21603 0.99088 0.94127 0.99918 1.21647 0.97800 0.93431 1.02123
1.22578 0.96126 0.89161 1.00429 1.63536 1.28607 1.01739 1.31140
1.22828 0.99915 0.96156 0.89706 1.22786 1.01035 0.96780 0.97495
1.22702 1.00773 0.96842 0.95694 1.22510 0.95269 0.91080 0.94821
0.92803 1.21424 1.02340 0.97308 0.92718 1.22419 0.98893 0.98597
0.80874 1.86419 1.87182 1.46852 1.18037 0.92986 0.96747 0.96625
0.93611 0.93757 0.92603 0.91754 0.90831 0.95057 0.90506 0.92225
0.90822 0.91662 0.90458 0.91053 0.90463 0.91479 0.94450 0.91869
0.77449
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16
4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16
7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16
8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16
9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16
10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16
11 C -0.11 -1.95 5.25 -26.73 -0.14 -2.09 16
12 C 0.04 0.64 4.04 -3.82 -0.02 0.62 16
13 N -0.53 -6.82 4.62 -223.39 -1.03 -7.85 16
14 C 0.04 0.50 6.21 -2.84 -0.02 0.48 16
15 C -0.14 -1.35 6.94 -24.91 -0.17 -1.52 16
16 C -0.12 -1.12 6.49 -24.60 -0.16 -1.28 16
17 C 0.07 0.78 2.58 -66.19 -0.17 0.61 16
18 H 0.05 0.59 7.81 -51.93 -0.41 0.18 16
19 C -0.10 -1.11 5.31 -26.73 -0.14 -1.25 16
20 C 0.07 0.81 5.85 37.16 0.22 1.03 16
21 O -0.58 -6.91 13.66 -35.23 -0.48 -7.39 16
22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16
24 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16
25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16
26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16
27 H 0.06 0.98 7.14 -51.93 -0.37 0.61 16
28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
29 H 0.07 1.01 5.29 -51.93 -0.27 0.74 16
30 H 0.03 0.45 7.96 -51.93 -0.41 0.03 16
31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
32 H 0.06 0.75 6.91 -51.93 -0.36 0.39 16
33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
35 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16
36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
39 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16
40 H 0.06 0.82 6.01 -51.93 -0.31 0.51 16
41 H 0.38 2.97 9.12 45.56 0.42 3.39 16
LS Contribution 321.84 15.07 4.85 4.85
Total: -1.00 -31.58 321.84 -8.99 -40.57
By element:
Atomic # 1 Polarization: 5.51 SS G_CDS: -6.75 Total: -1.25 kcal
Atomic # 6 Polarization: -17.87 SS G_CDS: -1.29 Total: -19.16 kcal
Atomic # 7 Polarization: -34.18 SS G_CDS: -0.30 Total: -34.48 kcal
Atomic # 8 Polarization: -6.91 SS G_CDS: -0.48 Total: -7.39 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal
Total LS contribution 4.85 Total: 4.85 kcal
Total: -31.58 -8.99 -40.57 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385322479.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.250 kcal
(2) G-P(sol) polarization free energy of solvation -31.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.568 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.818 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds