Wall clock time and date at job start Mon Mar 30 2020 03:18:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31509 * 1
3 3 Si 1.86800 * 119.99592 * 2 1
4 4 H 1.48501 * 109.47053 * 239.99918 * 3 2 1
5 5 H 1.48501 * 109.47412 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47205 * 119.99930 * 3 2 1
7 7 C 1.37874 * 120.00425 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00069 * 180.02562 * 7 2 1
9 9 C 1.50696 * 119.99979 * 0.02562 * 7 2 1
10 10 C 1.53005 * 109.47121 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.46799 * 179.97438 * 10 9 7
12 12 C 1.53005 * 109.46799 * 179.97438 * 11 10 9
13 13 N 1.46900 * 109.47060 * 180.02562 * 12 11 10
14 14 C 1.47446 * 111.00255 * 69.87065 * 13 12 11
15 15 C 1.54316 * 107.23320 * 123.25926 * 14 13 12
16 16 C 1.55139 * 103.01810 * 22.28197 * 15 14 13
17 17 C 1.47843 * 110.99888 * 190.71516 * 13 12 11
18 18 H 1.08998 * 110.37465 * 332.46027 * 17 13 12
19 19 C 1.52999 * 110.37447 * 94.80569 * 17 13 12
20 20 C 1.53006 * 109.47020 * 294.99952 * 19 17 13
21 21 O 1.42903 * 109.46938 * 179.97438 * 20 19 17
22 22 H 0.96999 * 120.00585 * 359.97438 * 1 2 3
23 23 H 1.09002 * 109.47660 * 59.99490 * 9 7 2
24 24 H 1.09007 * 109.46899 * 299.99571 * 9 7 2
25 25 H 1.08991 * 109.47338 * 59.99747 * 10 9 7
26 26 H 1.08999 * 109.46924 * 299.99261 * 10 9 7
27 27 H 1.09001 * 109.47272 * 59.99932 * 11 10 9
28 28 H 1.08999 * 109.46904 * 299.99426 * 11 10 9
29 29 H 1.08991 * 109.47338 * 59.99900 * 12 11 10
30 30 H 1.08999 * 109.46924 * 299.99414 * 12 11 10
31 31 H 1.08997 * 109.88511 * 242.66682 * 14 13 12
32 32 H 1.08995 * 109.88851 * 3.68984 * 14 13 12
33 33 H 1.08999 * 110.70589 * 140.66668 * 15 14 13
34 34 H 1.08996 * 110.70709 * 263.73004 * 15 14 13
35 35 H 1.09005 * 110.98834 * 82.44234 * 16 15 14
36 36 H 1.08998 * 110.98952 * 206.25134 * 16 15 14
37 37 H 1.08999 * 109.47035 * 54.99844 * 19 17 13
38 38 H 1.09002 * 109.47224 * 175.00139 * 19 17 13
39 39 H 1.08997 * 109.46751 * 300.00207 * 20 19 17
40 40 H 1.09002 * 109.46969 * 60.00031 * 20 19 17
41 41 H 0.96699 * 113.99408 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 3.1027 1.6965 -1.2125
5 1 1.2840 2.7465 0.0006
6 1 3.1027 1.6966 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0010
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0018
11 6 1.4805 -4.9870 0.0025
12 6 2.4749 -6.1499 0.0031
13 7 1.7405 -7.4222 0.0031
14 6 1.0665 -7.6433 -1.2895
15 6 1.5688 -8.9938 -1.8419
16 6 2.0650 -9.7291 -0.5691
17 6 2.6500 -8.5590 0.2603
18 1 3.6589 -8.3217 -0.0773
19 6 2.6543 -8.9114 1.7492
20 6 3.2439 -7.7467 2.5473
21 8 3.2474 -8.0756 3.9379
22 1 -0.4851 0.8400 0.0004
23 1 0.6247 -2.5571 -0.8896
24 1 0.6242 -2.5567 0.8904
25 1 2.8715 -3.6038 0.8922
26 1 2.8727 -3.6046 -0.8878
27 1 0.8542 -5.0455 -0.8877
28 1 0.8536 -5.0441 0.8923
29 1 3.1015 -6.0917 0.8930
30 1 3.1015 -6.0926 -0.8869
31 1 -0.0129 -7.6809 -1.1432
32 1 1.3189 -6.8399 -1.9815
33 1 0.7544 -9.5446 -2.3124
34 1 2.3869 -8.8419 -2.5459
35 1 1.2359 -10.2037 -0.0442
36 1 2.8374 -10.4577 -0.8153
37 1 1.6332 -9.0991 2.0811
38 1 3.2585 -9.8044 1.9095
39 1 4.2650 -7.5589 2.2153
40 1 2.6398 -6.8537 2.3870
41 1 3.6091 -7.3812 4.5054
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385322479.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:29
Heat of formation + Delta-G solvation = -98.598417 kcal
Electronic energy + Delta-G solvation = -17588.832660 eV
Core-core repulsion = 14887.450286 eV
Total energy + Delta-G solvation = -2701.382374 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.46815 -37.69277 -36.67178 -34.74472 -33.11403 -32.59523 -29.47418 -28.12868
-26.36167 -24.30499 -22.73871 -22.22668 -21.20579 -20.87270 -18.41399 -18.36068
-17.48886 -16.58890 -16.40698 -16.02257 -15.83704 -15.06065 -14.79865 -14.42317
-14.27571 -14.05503 -13.84425 -13.45772 -13.12340 -12.92873 -12.73953 -12.51210
-12.37505 -12.18037 -12.14750 -11.99718 -11.87678 -11.64103 -11.48273 -11.35282
-11.28262 -10.97145 -10.77017 -10.55445 -9.26335 -8.19884 -6.31878 1.39321
1.42783 1.50798 2.40716 2.94779 3.12757 3.28551 3.69515 3.85883
4.03406 4.09326 4.15469 4.25220 4.33803 4.41919 4.48092 4.54167
4.57681 4.61731 4.72927 4.80551 4.88831 4.94963 4.98646 5.01573
5.08258 5.16450 5.19215 5.27407 5.31941 5.34904 5.39507 5.54242
5.76126 5.85853 6.09389 6.18215 6.25194 6.85459 6.86801 7.37620
8.91887
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.027446 B = 0.004346 C = 0.003914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1019.943425 B = 6441.502418 C = 7151.652788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C -0.002 4.002
3 Si 0.966 3.034
4 H -0.266 1.266
5 H -0.283 1.283
6 H -0.266 1.266
7 C -0.546 4.546
8 H 0.061 0.939
9 C 0.024 3.976
10 C -0.096 4.096
11 C -0.101 4.101
12 C 0.056 3.944
13 N -0.539 5.539
14 C 0.036 3.964
15 C -0.135 4.135
16 C -0.117 4.117
17 C 0.071 3.929
18 H 0.060 0.940
19 C -0.096 4.096
20 C 0.069 3.931
21 O -0.595 6.595
22 H 0.264 0.736
23 H -0.013 1.013
24 H -0.012 1.012
25 H 0.052 0.948
26 H 0.050 0.950
27 H 0.048 0.952
28 H 0.051 0.949
29 H 0.081 0.919
30 H 0.036 0.964
31 H 0.070 0.930
32 H 0.048 0.952
33 H 0.087 0.913
34 H 0.071 0.929
35 H 0.077 0.923
36 H 0.092 0.908
37 H 0.062 0.938
38 H 0.080 0.920
39 H 0.050 0.950
40 H 0.046 0.954
41 H 0.394 0.606
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.242 -19.769 -0.212 21.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.199 4.199
3 Si 0.790 3.210
4 H -0.191 1.191
5 H -0.208 1.208
6 H -0.191 1.191
7 C -0.584 4.584
8 H 0.079 0.921
9 C -0.013 4.013
10 C -0.134 4.134
11 C -0.139 4.139
12 C -0.071 4.071
13 N -0.264 5.264
14 C -0.092 4.092
15 C -0.174 4.174
16 C -0.154 4.154
17 C -0.037 4.037
18 H 0.078 0.922
19 C -0.134 4.134
20 C -0.008 4.008
21 O -0.403 6.403
22 H 0.072 0.928
23 H 0.006 0.994
24 H 0.006 0.994
25 H 0.071 0.929
26 H 0.068 0.932
27 H 0.067 0.933
28 H 0.070 0.930
29 H 0.099 0.901
30 H 0.054 0.946
31 H 0.088 0.912
32 H 0.067 0.933
33 H 0.105 0.895
34 H 0.090 0.910
35 H 0.095 0.905
36 H 0.111 0.889
37 H 0.081 0.919
38 H 0.099 0.901
39 H 0.068 0.932
40 H 0.064 0.936
41 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges 6.465 -20.174 -0.046 21.185
hybrid contribution 0.720 1.810 -0.413 1.991
sum 7.185 -18.364 -0.459 19.725
Atomic orbital electron populations
1.70100 1.07916 1.27850 1.51655 1.26020 0.95767 1.03484 0.94669
0.85486 0.78268 0.77956 0.79251 1.19083 1.20808 1.19059 1.21706
0.93568 0.92456 1.50629 0.92108 1.19009 0.94488 0.93361 0.94485
1.21401 0.97948 0.93611 1.00434 1.21459 0.97975 0.93299 1.01152
1.22353 0.95096 0.88703 1.00997 1.63461 1.29202 1.01814 1.31903
1.22866 0.99590 0.97493 0.89232 1.22755 1.01658 0.95241 0.97724
1.22709 1.01302 0.96455 0.94975 1.22576 0.95213 0.90905 0.94971
0.92206 1.21406 1.01641 0.97651 0.92747 1.22408 0.99274 0.98111
0.81001 1.86381 1.87504 1.48000 1.18421 0.92770 0.99415 0.99385
0.92937 0.93165 0.93292 0.93046 0.90086 0.94598 0.91205 0.93300
0.89468 0.90999 0.90461 0.88932 0.91933 0.90136 0.93192 0.93627
0.75640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.21 13.29 21.45 0.28 -57.92 16
2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16
3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16
4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16
5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16
6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
7 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16
8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16
9 C 0.02 1.29 4.97 29.85 0.15 1.44 16
10 C -0.10 -4.01 5.15 30.60 0.16 -3.85 16
11 C -0.10 -3.56 5.25 30.60 0.16 -3.40 16
12 C 0.06 1.56 4.04 86.30 0.35 1.91 16
13 N -0.54 -13.49 4.62 -860.68 -3.98 -17.47 16
14 C 0.04 0.83 6.21 86.64 0.54 1.36 16
15 C -0.14 -2.26 6.94 31.77 0.22 -2.04 16
16 C -0.12 -1.84 6.49 31.98 0.21 -1.63 16
17 C 0.07 1.42 2.58 45.38 0.12 1.53 16
18 H 0.06 1.15 7.81 -2.39 -0.02 1.13 16
19 C -0.10 -1.99 5.31 30.60 0.16 -1.83 16
20 C 0.07 1.53 5.85 71.98 0.42 1.95 16
21 O -0.59 -13.47 13.66 -148.98 -2.04 -15.51 16
22 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
23 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16
24 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16
25 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16
26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
27 H 0.05 1.77 7.14 -2.39 -0.02 1.75 16
28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16
29 H 0.08 2.13 5.29 -2.39 -0.01 2.12 16
30 H 0.04 0.97 7.96 -2.39 -0.02 0.95 16
31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
32 H 0.05 1.22 6.91 -2.39 -0.02 1.20 16
33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
35 H 0.08 1.24 8.06 -2.38 -0.02 1.22 16
36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16
38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
39 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
40 H 0.05 1.16 6.01 -2.39 -0.01 1.14 16
41 H 0.39 5.74 9.12 -74.06 -0.68 5.07 16
Total: -1.00 -67.92 321.84 -0.22 -68.14
By element:
Atomic # 1 Polarization: 11.45 SS G_CDS: 0.30 Total: 11.75 kcal
Atomic # 6 Polarization: -38.92 SS G_CDS: 3.18 Total: -35.74 kcal
Atomic # 7 Polarization: -71.69 SS G_CDS: -3.69 Total: -75.39 kcal
Atomic # 8 Polarization: -13.47 SS G_CDS: -2.04 Total: -15.51 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal
Total: -67.92 -0.22 -68.14 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385322479.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.458 kcal
(2) G-P(sol) polarization free energy of solvation -67.917 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.375 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.598 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds