Wall clock time and date at job start Mon Mar 30 2020 03:27:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47035 * 2 1
4 4 C 1.52998 * 109.47092 * 239.99714 * 2 1 3
5 5 C 1.53005 * 115.55102 * 296.51770 * 4 2 1
6 6 N 1.46902 * 109.47008 * 295.12891 * 5 4 2
7 7 C 1.46900 * 110.99953 * 176.10715 * 6 5 4
8 8 C 1.52995 * 109.47207 * 179.97438 * 7 6 5
9 9 O 1.42907 * 109.46999 * 64.99838 * 8 7 6
10 10 C 1.42898 * 114.00007 * 180.02562 * 9 8 7
11 11 C 1.50701 * 109.47309 * 180.02562 * 10 9 8
12 12 H 1.07999 * 119.99733 * 359.97438 * 11 10 9
13 13 C 1.37873 * 119.99963 * 180.02562 * 11 10 9
14 14 N 1.31517 * 120.00219 * 359.97438 * 13 11 10
15 15 Si 1.86805 * 119.99663 * 179.97438 * 13 11 10
16 16 H 1.48500 * 109.46897 * 89.99966 * 15 13 11
17 17 H 1.48497 * 109.46862 * 209.99594 * 15 13 11
18 18 H 1.48493 * 109.47186 * 329.99596 * 15 13 11
19 19 C 1.53001 * 117.49953 * 150.84850 * 4 2 1
20 20 C 1.52999 * 117.49932 * 82.18836 * 4 2 1
21 21 H 1.08999 * 109.47367 * 175.67741 * 1 2 3
22 22 H 1.08996 * 109.47182 * 55.67883 * 1 2 3
23 23 H 1.09003 * 109.47347 * 295.67694 * 1 2 3
24 24 H 1.08998 * 109.47062 * 119.99819 * 2 1 3
25 25 H 1.08998 * 109.47115 * 59.99779 * 3 2 1
26 26 H 1.09000 * 109.47257 * 179.97438 * 3 2 1
27 27 H 1.09008 * 109.46947 * 299.99837 * 3 2 1
28 28 H 1.09002 * 109.46771 * 55.12415 * 5 4 2
29 29 H 1.08994 * 109.46967 * 175.12610 * 5 4 2
30 30 H 1.00891 * 111.00106 * 52.14820 * 6 5 4
31 31 H 1.09002 * 109.46630 * 299.99530 * 7 6 5
32 32 H 1.08999 * 109.47213 * 59.99022 * 7 6 5
33 33 H 1.09000 * 109.47068 * 184.99302 * 8 7 6
34 34 H 1.08996 * 109.47143 * 304.99688 * 8 7 6
35 35 H 1.09009 * 109.46981 * 299.99935 * 10 9 8
36 36 H 1.08997 * 109.47290 * 59.99860 * 10 9 8
37 37 H 0.97001 * 119.99631 * 180.02562 * 14 13 11
38 38 H 1.09003 * 117.49477 * 0.02562 * 19 4 2
39 39 H 1.08995 * 117.49761 * 145.01570 * 19 4 2
40 40 H 1.08997 * 117.49906 * 214.97747 * 20 4 2
41 41 H 1.09001 * 117.50029 * 359.97438 * 20 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 1.6789 -2.2048 -1.3483
6 7 2.3375 -2.9427 -0.2621
7 6 1.9401 -4.3569 -0.2698
8 6 2.6452 -5.0910 0.8724
9 8 2.1866 -4.5763 2.1242
10 6 2.7867 -5.1972 3.2628
11 6 2.2326 -4.5809 4.5215
12 1 1.4961 -3.7935 4.4582
13 6 2.6665 -5.0216 5.7537
14 7 3.5637 -5.9801 5.8308
15 14 1.9801 -4.2571 7.3138
16 1 0.7754 -5.0104 7.7455
17 1 3.0075 -4.3105 8.3847
18 1 1.6118 -2.8427 7.0514
19 6 3.3929 -0.2843 -1.8144
20 6 2.1015 0.0793 -2.5516
21 1 -0.3634 -1.0247 -0.0775
22 1 -0.3633 0.5794 -0.8487
23 1 -0.3634 0.4453 0.9262
24 1 1.8933 -0.5138 0.8900
25 1 1.6766 1.9563 0.8899
26 1 3.1300 1.4425 0.0005
27 1 1.6766 1.9563 -0.8901
28 1 0.5985 -2.3221 -1.2642
29 1 2.0133 -2.5968 -2.3088
30 1 2.1447 -2.5178 0.6325
31 1 0.8606 -4.4316 -0.1387
32 1 2.2227 -4.8085 -1.2208
33 1 2.4205 -6.1560 0.8133
34 1 3.7217 -4.9417 0.7905
35 1 2.5654 -6.2646 3.2534
36 1 3.8662 -5.0497 3.2304
37 1 3.8687 -6.2903 6.6977
38 1 3.9198 0.5168 -1.2961
39 1 4.0255 -1.0536 -2.2571
40 1 1.8852 -0.4510 -3.4790
41 1 1.7783 1.1197 -2.5186
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385385324.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:28
Heat of formation + Delta-G solvation = -42.741536 kcal
Electronic energy + Delta-G solvation = -17603.697499 eV
Core-core repulsion = 14904.737262 eV
Total energy + Delta-G solvation = -2698.960238 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.31178 -37.00679 -34.80446 -32.92841 -32.64577 -29.51169 -27.37681 -26.72153
-24.73998 -22.79962 -22.32560 -22.14106 -21.23347 -18.17155 -16.47575 -16.13666
-15.94429 -15.41989 -15.04991 -14.47700 -14.35388 -13.92247 -13.57575 -13.48900
-12.97012 -12.70902 -12.23765 -12.12004 -11.86726 -11.72632 -11.61617 -11.29191
-11.04432 -11.01100 -10.81995 -10.75194 -10.67252 -10.40632 -10.09080 -9.93109
-9.61071 -9.09169 -8.80660 -8.15278 -8.10827 -6.09663 -4.11371 3.30719
3.35736 3.40913 3.72646 4.35910 4.48484 4.65187 4.73980 4.88912
4.97490 4.98684 5.19385 5.26847 5.32673 5.51134 5.51869 5.58154
5.65799 5.67552 5.74486 5.78115 5.84558 5.88041 5.94278 6.08226
6.10475 6.16550 6.23218 6.28382 6.35656 6.37420 6.40381 7.13423
7.29268 7.45964 7.72668 7.80246 8.16960 8.59750 9.01834 9.53463
11.01899
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.024279 B = 0.004882 C = 0.004335
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1152.989457 B = 5734.120089 C = 6457.590186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.063 4.063
3 C -0.151 4.151
4 C -0.113 4.113
5 C 0.096 3.904
6 N -0.683 5.683
7 C 0.065 3.935
8 C 0.062 3.938
9 O -0.399 6.399
10 C 0.197 3.803
11 C -0.514 4.514
12 H 0.065 0.935
13 C 0.056 3.944
14 N -0.898 5.898
15 Si 0.907 3.093
16 H -0.279 1.279
17 H -0.285 1.285
18 H -0.272 1.272
19 C -0.163 4.163
20 C -0.179 4.179
21 H 0.055 0.945
22 H 0.051 0.949
23 H 0.054 0.946
24 H 0.081 0.919
25 H 0.054 0.946
26 H 0.059 0.941
27 H 0.054 0.946
28 H 0.032 0.968
29 H 0.066 0.934
30 H 0.355 0.645
31 H 0.032 0.968
32 H 0.073 0.927
33 H 0.040 0.960
34 H 0.046 0.954
35 H 0.003 0.997
36 H 0.006 0.994
37 H 0.264 0.736
38 H 0.095 0.905
39 H 0.093 0.907
40 H 0.088 0.912
41 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.424 10.760 -15.411 19.105
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.082 4.082
3 C -0.208 4.208
4 C -0.114 4.114
5 C -0.034 4.034
6 N -0.316 5.316
7 C -0.064 4.064
8 C -0.016 4.016
9 O -0.319 6.319
10 C 0.123 3.877
11 C -0.552 4.552
12 H 0.083 0.917
13 C -0.145 4.145
14 N -0.538 5.538
15 Si 0.734 3.266
16 H -0.205 1.205
17 H -0.211 1.211
18 H -0.196 1.196
19 C -0.200 4.200
20 C -0.216 4.216
21 H 0.074 0.926
22 H 0.070 0.930
23 H 0.073 0.927
24 H 0.099 0.901
25 H 0.073 0.927
26 H 0.077 0.923
27 H 0.073 0.927
28 H 0.050 0.950
29 H 0.084 0.916
30 H 0.176 0.824
31 H 0.051 0.949
32 H 0.091 0.909
33 H 0.058 0.942
34 H 0.064 0.936
35 H 0.021 0.979
36 H 0.024 0.976
37 H 0.073 0.927
38 H 0.113 0.887
39 H 0.112 0.888
40 H 0.107 0.893
41 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -2.884 10.679 -15.605 19.128
hybrid contribution -0.935 0.012 1.165 1.494
sum -3.819 10.691 -14.440 18.368
Atomic orbital electron populations
1.21802 0.95150 1.01823 1.01366 1.20584 0.95443 0.95490 0.96656
1.21976 1.01295 0.95987 1.01504 1.21439 1.01196 0.94290 0.94434
1.21434 0.95967 0.90397 0.95573 1.60467 1.60971 1.02097 1.08105
1.21946 0.97712 0.89060 0.97667 1.22290 0.97844 0.95795 0.85629
1.87785 1.67369 1.63368 1.13391 1.20171 0.92854 0.92548 0.82145
1.21049 1.24256 1.20446 0.89467 0.91653 1.24942 0.95101 0.95179
0.99243 1.69967 1.30495 1.28141 1.25159 0.86353 0.78563 0.79681
0.81992 1.20506 1.21066 1.19641 1.23015 0.90535 1.03147 1.03279
1.23059 1.02710 1.00553 0.95292 0.92643 0.92985 0.92661 0.90118
0.92650 0.92250 0.92732 0.95025 0.91571 0.82440 0.94930 0.90860
0.94231 0.93571 0.97870 0.97618 0.92673 0.88697 0.88845 0.89329
0.88792
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.58 9.08 37.16 0.34 -1.25 16
2 C -0.06 -0.74 2.82 -90.62 -0.26 -0.99 16
3 C -0.15 -1.52 8.26 37.16 0.31 -1.21 16
4 C -0.11 -1.29 1.75 -154.51 -0.27 -1.56 16
5 C 0.10 1.20 5.37 -3.82 -0.02 1.18 16
6 N -0.68 -10.48 6.53 -113.78 -0.74 -11.22 16
7 C 0.07 1.02 6.10 -3.83 -0.02 1.00 16
8 C 0.06 1.19 6.28 37.16 0.23 1.42 16
9 O -0.40 -9.64 9.85 -35.23 -0.35 -9.99 16
10 C 0.20 5.47 5.69 36.01 0.20 5.68 16
11 C -0.51 -15.21 9.43 -34.44 -0.32 -15.54 16
12 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16
13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
14 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16
15 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16
16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16
17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
19 C -0.16 -1.76 9.54 -26.69 -0.25 -2.01 16
20 C -0.18 -1.72 9.55 -26.69 -0.25 -1.97 16
21 H 0.05 0.65 6.74 -51.93 -0.35 0.30 16
22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
24 H 0.08 1.11 7.01 -51.93 -0.36 0.74 16
25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
26 H 0.06 0.60 6.30 -51.93 -0.33 0.27 16
27 H 0.05 0.49 6.35 -51.92 -0.33 0.16 16
28 H 0.03 0.40 6.82 -51.93 -0.35 0.05 16
29 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16
30 H 0.36 6.10 6.90 -39.30 -0.27 5.83 16
31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
35 H 0.00 0.10 8.14 -51.92 -0.42 -0.32 16
36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
38 H 0.09 0.98 6.13 -51.93 -0.32 0.67 16
39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16
40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16
41 H 0.09 0.83 6.37 -51.93 -0.33 0.50 16
LS Contribution 326.25 15.07 4.92 4.92
Total: -1.00 -30.25 326.25 -8.14 -38.39
By element:
Atomic # 1 Polarization: 8.33 SS G_CDS: -7.26 Total: 1.07 kcal
Atomic # 6 Polarization: -13.29 SS G_CDS: -0.42 Total: -13.71 kcal
Atomic # 7 Polarization: -37.58 SS G_CDS: -0.01 Total: -37.59 kcal
Atomic # 8 Polarization: -9.64 SS G_CDS: -0.35 Total: -9.99 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal
Total LS contribution 4.92 Total: 4.92 kcal
Total: -30.25 -8.14 -38.39 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385385324.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.356 kcal
(2) G-P(sol) polarization free energy of solvation -30.247 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.742 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds