Wall clock time and date at job start Mon Mar 30 2020 03:27:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47035 * 2 1
4 4 C 1.52998 * 109.47092 * 239.99714 * 2 1 3
5 5 C 1.53005 * 115.55102 * 296.51770 * 4 2 1
6 6 N 1.46902 * 109.47008 * 295.12891 * 5 4 2
7 7 C 1.46900 * 110.99953 * 176.10715 * 6 5 4
8 8 C 1.52995 * 109.47207 * 179.97438 * 7 6 5
9 9 O 1.42907 * 109.46999 * 64.99838 * 8 7 6
10 10 C 1.42898 * 114.00007 * 180.02562 * 9 8 7
11 11 C 1.50701 * 109.47309 * 180.02562 * 10 9 8
12 12 H 1.07999 * 119.99733 * 359.97438 * 11 10 9
13 13 C 1.37873 * 119.99963 * 180.02562 * 11 10 9
14 14 N 1.31517 * 120.00219 * 359.97438 * 13 11 10
15 15 Si 1.86805 * 119.99663 * 179.97438 * 13 11 10
16 16 H 1.48500 * 109.46897 * 89.99966 * 15 13 11
17 17 H 1.48497 * 109.46862 * 209.99594 * 15 13 11
18 18 H 1.48493 * 109.47186 * 329.99596 * 15 13 11
19 19 C 1.53001 * 117.49953 * 150.84850 * 4 2 1
20 20 C 1.52999 * 117.49932 * 82.18836 * 4 2 1
21 21 H 1.08999 * 109.47367 * 175.67741 * 1 2 3
22 22 H 1.08996 * 109.47182 * 55.67883 * 1 2 3
23 23 H 1.09003 * 109.47347 * 295.67694 * 1 2 3
24 24 H 1.08998 * 109.47062 * 119.99819 * 2 1 3
25 25 H 1.08998 * 109.47115 * 59.99779 * 3 2 1
26 26 H 1.09000 * 109.47257 * 179.97438 * 3 2 1
27 27 H 1.09008 * 109.46947 * 299.99837 * 3 2 1
28 28 H 1.09002 * 109.46771 * 55.12415 * 5 4 2
29 29 H 1.08994 * 109.46967 * 175.12610 * 5 4 2
30 30 H 1.00891 * 111.00106 * 52.14820 * 6 5 4
31 31 H 1.09002 * 109.46630 * 299.99530 * 7 6 5
32 32 H 1.08999 * 109.47213 * 59.99022 * 7 6 5
33 33 H 1.09000 * 109.47068 * 184.99302 * 8 7 6
34 34 H 1.08996 * 109.47143 * 304.99688 * 8 7 6
35 35 H 1.09009 * 109.46981 * 299.99935 * 10 9 8
36 36 H 1.08997 * 109.47290 * 59.99860 * 10 9 8
37 37 H 0.97001 * 119.99631 * 180.02562 * 14 13 11
38 38 H 1.09003 * 117.49477 * 0.02562 * 19 4 2
39 39 H 1.08995 * 117.49761 * 145.01570 * 19 4 2
40 40 H 1.08997 * 117.49906 * 214.97747 * 20 4 2
41 41 H 1.09001 * 117.50029 * 359.97438 * 20 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 1.6789 -2.2048 -1.3483
6 7 2.3375 -2.9427 -0.2621
7 6 1.9401 -4.3569 -0.2698
8 6 2.6452 -5.0910 0.8724
9 8 2.1866 -4.5763 2.1242
10 6 2.7867 -5.1972 3.2628
11 6 2.2326 -4.5809 4.5215
12 1 1.4961 -3.7935 4.4582
13 6 2.6665 -5.0216 5.7537
14 7 3.5637 -5.9801 5.8308
15 14 1.9801 -4.2571 7.3138
16 1 0.7754 -5.0104 7.7455
17 1 3.0075 -4.3105 8.3847
18 1 1.6118 -2.8427 7.0514
19 6 3.3929 -0.2843 -1.8144
20 6 2.1015 0.0793 -2.5516
21 1 -0.3634 -1.0247 -0.0775
22 1 -0.3633 0.5794 -0.8487
23 1 -0.3634 0.4453 0.9262
24 1 1.8933 -0.5138 0.8900
25 1 1.6766 1.9563 0.8899
26 1 3.1300 1.4425 0.0005
27 1 1.6766 1.9563 -0.8901
28 1 0.5985 -2.3221 -1.2642
29 1 2.0133 -2.5968 -2.3088
30 1 2.1447 -2.5178 0.6325
31 1 0.8606 -4.4316 -0.1387
32 1 2.2227 -4.8085 -1.2208
33 1 2.4205 -6.1560 0.8133
34 1 3.7217 -4.9417 0.7905
35 1 2.5654 -6.2646 3.2534
36 1 3.8662 -5.0497 3.2304
37 1 3.8687 -6.2903 6.6977
38 1 3.9198 0.5168 -1.2961
39 1 4.0255 -1.0536 -2.2571
40 1 1.8852 -0.4510 -3.4790
41 1 1.7783 1.1197 -2.5186
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385385324.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:28
Heat of formation + Delta-G solvation = -61.721300 kcal
Electronic energy + Delta-G solvation = -17604.520524 eV
Core-core repulsion = 14904.737262 eV
Total energy + Delta-G solvation = -2699.783262 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.22200 -38.76251 -36.18964 -34.82953 -33.77873 -30.97322 -29.06765 -27.99812
-25.89409 -24.52091 -23.66145 -23.01331 -22.62314 -19.09113 -18.63230 -17.56636
-17.08305 -16.94905 -16.51046 -16.36683 -15.37022 -15.19167 -15.06949 -14.87863
-14.16452 -13.82667 -13.49784 -13.35485 -13.22577 -13.02044 -12.85960 -12.70957
-12.59080 -12.46917 -12.35077 -11.93950 -11.89942 -11.82891 -11.38571 -11.28402
-10.90247 -10.87706 -10.49253 -10.23854 -9.30005 -8.32618 -6.45176 1.39389
1.42318 1.54329 2.34107 2.82928 3.01323 3.20916 3.41585 3.76190
3.85353 3.98235 4.11420 4.21253 4.31384 4.37805 4.48695 4.52960
4.60399 4.69948 4.78484 4.79286 4.83927 4.85112 4.86784 4.94972
5.01677 5.05677 5.08337 5.17387 5.21812 5.37506 5.41125 5.48666
5.50292 5.53944 5.94981 6.13426 6.40496 6.52406 6.80730 7.26813
8.79858
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.024279 B = 0.004882 C = 0.004335
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1152.989457 B = 5734.120089 C = 6457.590186
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.064 4.064
3 C -0.147 4.147
4 C -0.128 4.128
5 C 0.098 3.902
6 N -0.692 5.692
7 C 0.075 3.925
8 C 0.055 3.945
9 O -0.408 6.408
10 C 0.211 3.789
11 C -0.547 4.547
12 H 0.062 0.938
13 C 0.007 3.993
14 N -0.931 5.931
15 Si 0.983 3.017
16 H -0.267 1.267
17 H -0.274 1.274
18 H -0.264 1.264
19 C -0.170 4.170
20 C -0.156 4.156
21 H 0.043 0.957
22 H 0.067 0.933
23 H 0.053 0.947
24 H 0.050 0.950
25 H 0.055 0.945
26 H 0.057 0.943
27 H 0.070 0.930
28 H 0.032 0.968
29 H 0.077 0.923
30 H 0.341 0.659
31 H 0.031 0.969
32 H 0.104 0.896
33 H 0.049 0.951
34 H 0.042 0.958
35 H -0.015 1.015
36 H -0.016 1.016
37 H 0.271 0.729
38 H 0.097 0.903
39 H 0.088 0.912
40 H 0.100 0.900
41 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.236 12.029 -16.044 20.496
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.083 4.083
3 C -0.204 4.204
4 C -0.128 4.128
5 C -0.031 4.031
6 N -0.324 5.324
7 C -0.055 4.055
8 C -0.023 4.023
9 O -0.328 6.328
10 C 0.136 3.864
11 C -0.585 4.585
12 H 0.080 0.920
13 C -0.192 4.192
14 N -0.570 5.570
15 Si 0.806 3.194
16 H -0.192 1.192
17 H -0.199 1.199
18 H -0.188 1.188
19 C -0.206 4.206
20 C -0.194 4.194
21 H 0.062 0.938
22 H 0.086 0.914
23 H 0.072 0.928
24 H 0.069 0.931
25 H 0.074 0.926
26 H 0.075 0.925
27 H 0.089 0.911
28 H 0.050 0.950
29 H 0.095 0.905
30 H 0.160 0.840
31 H 0.049 0.951
32 H 0.122 0.878
33 H 0.067 0.933
34 H 0.060 0.940
35 H 0.003 0.997
36 H 0.002 0.998
37 H 0.080 0.920
38 H 0.115 0.885
39 H 0.106 0.894
40 H 0.118 0.882
41 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -3.697 11.944 -16.277 20.524
hybrid contribution -0.643 -0.420 1.273 1.487
sum -4.339 11.524 -15.003 19.410
Atomic orbital electron populations
1.21767 0.94700 1.01317 1.01978 1.20541 0.95831 0.96218 0.95669
1.21944 1.01154 0.94957 1.02311 1.21402 1.02108 0.93808 0.95477
1.21481 0.95768 0.91024 0.94816 1.60518 1.61645 1.02105 1.08154
1.21913 0.97120 0.89232 0.97185 1.22602 0.98155 0.96956 0.84551
1.87753 1.67296 1.63514 1.14282 1.19794 0.91570 0.91530 0.83486
1.21372 1.25092 1.21174 0.90849 0.92011 1.25960 0.94993 0.95327
1.02882 1.70076 1.31284 1.29085 1.26577 0.85188 0.78233 0.78968
0.77057 1.19250 1.19904 1.18846 1.23039 0.90678 1.03207 1.03721
1.23126 1.00809 1.00940 0.94489 0.93837 0.91388 0.92828 0.93136
0.92621 0.92453 0.91127 0.95008 0.90454 0.84013 0.95059 0.87826
0.93321 0.93979 0.99730 0.99827 0.92038 0.88485 0.89393 0.88206
0.87500
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.96 9.08 71.98 0.65 -2.31 16
2 C -0.06 -1.45 2.82 -10.80 -0.03 -1.48 16
3 C -0.15 -2.76 8.26 71.98 0.59 -2.17 16
4 C -0.13 -2.74 1.75 -52.18 -0.09 -2.83 16
5 C 0.10 2.34 5.37 86.30 0.46 2.80 16
6 N -0.69 -21.08 6.53 -513.88 -3.35 -24.43 16
7 C 0.07 2.27 6.10 86.30 0.53 2.79 16
8 C 0.05 2.10 6.28 71.98 0.45 2.55 16
9 O -0.41 -20.28 9.85 -148.98 -1.47 -21.75 16
10 C 0.21 12.15 5.69 71.24 0.41 12.56 16
11 C -0.55 -33.05 9.43 25.60 0.24 -32.81 16
12 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16
13 C 0.01 0.40 5.46 84.65 0.46 0.86 16
14 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16
15 Si 0.98 44.74 29.54 68.60 2.03 46.77 16
16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16
17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16
19 C -0.17 -3.41 9.54 30.62 0.29 -3.12 16
20 C -0.16 -2.59 9.55 30.62 0.29 -2.30 16
21 H 0.04 1.00 6.74 -2.39 -0.02 0.99 16
22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16
24 H 0.05 1.44 7.01 -2.39 -0.02 1.42 16
25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16
26 H 0.06 1.09 6.30 -2.39 -0.02 1.08 16
27 H 0.07 1.09 6.35 -2.38 -0.02 1.08 16
28 H 0.03 0.77 6.82 -2.39 -0.02 0.75 16
29 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16
30 H 0.34 12.03 6.90 -89.70 -0.62 11.41 16
31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16
32 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16
33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16
34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16
35 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16
36 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16
37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16
38 H 0.10 1.90 6.13 -2.39 -0.01 1.88 16
39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16
41 H 0.11 1.52 6.37 -2.39 -0.02 1.51 16
Total: -1.00 -65.03 326.25 2.12 -62.91
By element:
Atomic # 1 Polarization: 17.97 SS G_CDS: 0.37 Total: 18.34 kcal
Atomic # 6 Polarization: -29.71 SS G_CDS: 4.26 Total: -25.45 kcal
Atomic # 7 Polarization: -77.75 SS G_CDS: -3.07 Total: -80.82 kcal
Atomic # 8 Polarization: -20.28 SS G_CDS: -1.47 Total: -21.75 kcal
Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal
Total: -65.03 2.12 -62.91 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385385324.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.189 kcal
(2) G-P(sol) polarization free energy of solvation -65.029 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.911 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds