Wall clock time and date at job start Mon Mar 30 2020 04:06:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53003 * 109.46979 * 2 1
4 4 C 1.52995 * 109.47227 * 240.00352 * 2 1 3
5 5 O 1.42903 * 109.47523 * 59.99630 * 4 2 1
6 6 C 1.52995 * 109.47000 * 119.99798 * 2 1 3
7 7 C 1.53004 * 109.47447 * 300.00217 * 6 2 1
8 8 N 1.46897 * 109.46952 * 184.72119 * 7 6 2
9 9 C 1.46901 * 110.99783 * 184.86873 * 8 7 6
10 10 C 1.52997 * 109.47049 * 185.32570 * 9 8 7
11 11 C 1.50698 * 115.55153 * 305.30009 * 10 9 8
12 12 H 1.08000 * 120.00351 * 275.48371 * 11 10 9
13 13 C 1.37881 * 119.99676 * 95.20862 * 11 10 9
14 14 N 1.31512 * 119.99933 * 175.54134 * 13 11 10
15 15 Si 1.86801 * 119.99965 * 355.54020 * 13 11 10
16 16 H 1.48501 * 109.47029 * 94.99899 * 15 13 11
17 17 H 1.48495 * 109.47173 * 214.99773 * 15 13 11
18 18 H 1.48493 * 109.47053 * 335.00101 * 15 13 11
19 19 C 1.53001 * 117.50109 * 90.97439 * 10 9 8
20 20 C 1.53004 * 117.49753 * 159.63270 * 10 9 8
21 21 H 1.08997 * 109.46878 * 299.99933 * 1 2 3
22 22 H 1.09005 * 109.47066 * 60.00036 * 1 2 3
23 23 H 1.09000 * 109.46704 * 179.97438 * 1 2 3
24 24 H 1.08998 * 109.47429 * 180.02562 * 3 2 1
25 25 H 1.08996 * 109.47051 * 300.00084 * 3 2 1
26 26 H 1.09007 * 109.47230 * 59.99728 * 3 2 1
27 27 H 1.09000 * 109.47244 * 180.02562 * 4 2 1
28 28 H 1.09004 * 109.46879 * 299.99965 * 4 2 1
29 29 H 0.96702 * 113.99994 * 180.02562 * 5 4 2
30 30 H 1.09000 * 109.47255 * 179.97438 * 6 2 1
31 31 H 1.09000 * 109.47209 * 60.00533 * 6 2 1
32 32 H 1.08993 * 109.46907 * 64.71934 * 7 6 2
33 33 H 1.09006 * 109.46813 * 304.72069 * 7 6 2
34 34 H 1.00897 * 111.00238 * 308.82035 * 8 7 6
35 35 H 1.09003 * 109.47439 * 65.32538 * 9 8 7
36 36 H 1.09004 * 109.47060 * 305.32589 * 9 8 7
37 37 H 0.97000 * 119.99837 * 179.97438 * 14 13 11
38 38 H 1.08995 * 117.50244 * 215.00178 * 19 10 9
39 39 H 1.09006 * 117.49632 * 0.02562 * 19 10 9
40 40 H 1.09002 * 117.50150 * 359.97438 * 20 10 9
41 41 H 1.09000 * 117.49835 * 144.97371 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7211 -1.2492
5 8 1.5637 -0.0475 -2.4161
6 6 2.0400 -0.7212 1.2492
7 6 1.5300 0.0000 2.4985
8 7 2.1105 -0.6235 3.6952
9 6 1.5543 -0.0321 4.9194
10 6 2.2757 -0.6103 6.1385
11 6 2.2804 -2.1140 6.2382
12 1 1.4410 -2.6284 6.6821
13 6 3.3540 -2.8333 5.7576
14 7 3.3988 -4.1372 5.9229
15 14 4.7449 -1.9558 4.8716
16 1 5.8329 -1.6531 5.8358
17 1 5.2703 -2.8270 3.7899
18 1 4.2371 -0.6898 4.2848
19 6 3.5107 0.1354 6.6480
20 6 2.2042 0.1841 7.4441
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 3.1300 1.4426 -0.0005
25 1 1.6767 1.9563 -0.8899
26 1 1.6766 1.9564 0.8900
27 1 3.1301 -0.7215 -1.2490
28 1 1.6767 -1.7488 -1.2493
29 1 1.8488 -0.4513 -3.2472
30 1 3.1300 -0.7216 1.2490
31 1 1.6768 -1.7489 1.2492
32 1 0.4433 -0.0726 2.5418
33 1 1.8226 1.0493 2.4572
34 1 1.9760 -1.6234 3.6833
35 1 0.4908 -0.2624 4.9835
36 1 1.6911 1.0491 4.8952
37 1 4.1540 -4.6433 5.5845
38 1 4.3266 -0.4615 7.0553
39 1 3.8090 1.0382 6.1149
40 1 1.6436 1.1189 7.4346
41 1 2.1602 -0.3809 8.3752
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385947478.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:06:37
Heat of formation + Delta-G solvation = -35.976320 kcal
Electronic energy + Delta-G solvation = -18175.144257 eV
Core-core repulsion = 15476.477381 eV
Total energy + Delta-G solvation = -2698.666876 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-38.71345 -37.29298 -35.78557 -33.67650 -31.98146 -28.62221 -27.23141 -26.58177
-25.62170 -24.14799 -21.85313 -21.38490 -18.95007 -18.46128 -17.43095 -16.19083
-15.46180 -15.16617 -14.90199 -14.68216 -14.14357 -13.96088 -13.49212 -13.07719
-12.68920 -12.66141 -12.40559 -12.12497 -11.95625 -11.65205 -11.34225 -11.11011
-10.96686 -10.65895 -10.51178 -10.38221 -10.27553 -10.20770 -10.04590 -9.78999
-9.41560 -8.93354 -8.55677 -8.36399 -7.29788 -6.00614 -4.06997 3.49466
3.60296 3.93323 4.06975 4.67342 4.76151 4.79785 4.86776 5.05382
5.26772 5.31793 5.37381 5.44251 5.55385 5.61535 5.73490 5.83500
5.88493 5.89838 5.99813 6.03166 6.14101 6.18181 6.23527 6.26291
6.30392 6.45588 6.50914 6.52599 6.58819 6.60557 6.83110 7.13066
7.21740 7.49318 7.83856 7.92863 8.23180 8.57216 8.99005 9.63569
11.09012
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.028011 B = 0.006254 C = 0.005731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.361437 B = 4476.327322 C = 4884.846452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.061 4.061
3 C -0.137 4.137
4 C 0.085 3.915
5 O -0.571 6.571
6 C -0.111 4.111
7 C 0.057 3.943
8 N -0.677 5.677
9 C 0.103 3.897
10 C 0.009 3.991
11 C -0.495 4.495
12 H 0.071 0.929
13 C 0.080 3.920
14 N -0.903 5.903
15 Si 0.861 3.139
16 H -0.298 1.298
17 H -0.306 1.306
18 H -0.194 1.194
19 C -0.194 4.194
20 C -0.188 4.188
21 H 0.057 0.943
22 H 0.058 0.942
23 H 0.050 0.950
24 H 0.051 0.949
25 H 0.058 0.942
26 H 0.058 0.942
27 H 0.045 0.955
28 H 0.045 0.955
29 H 0.374 0.626
30 H 0.071 0.929
31 H 0.062 0.938
32 H 0.024 0.976
33 H 0.066 0.934
34 H 0.353 0.647
35 H 0.021 0.979
36 H 0.046 0.954
37 H 0.262 0.738
38 H 0.082 0.918
39 H 0.072 0.928
40 H 0.068 0.932
41 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.949 8.806 -13.341 16.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.061 4.061
3 C -0.194 4.194
4 C 0.007 3.993
5 O -0.376 6.376
6 C -0.149 4.149
7 C -0.072 4.072
8 N -0.310 5.310
9 C -0.027 4.027
10 C 0.007 3.993
11 C -0.532 4.532
12 H 0.089 0.911
13 C -0.122 4.122
14 N -0.540 5.540
15 Si 0.689 3.311
16 H -0.226 1.226
17 H -0.234 1.234
18 H -0.115 1.115
19 C -0.231 4.231
20 C -0.226 4.226
21 H 0.076 0.924
22 H 0.077 0.923
23 H 0.070 0.930
24 H 0.071 0.929
25 H 0.077 0.923
26 H 0.077 0.923
27 H 0.063 0.937
28 H 0.063 0.937
29 H 0.221 0.779
30 H 0.090 0.910
31 H 0.081 0.919
32 H 0.042 0.958
33 H 0.085 0.915
34 H 0.173 0.827
35 H 0.039 0.961
36 H 0.064 0.936
37 H 0.072 0.928
38 H 0.100 0.900
39 H 0.091 0.909
40 H 0.087 0.913
41 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -2.588 9.436 -12.927 16.213
hybrid contribution 0.326 -0.681 -0.695 1.026
sum -2.262 8.755 -13.622 16.350
Atomic orbital electron populations
1.21833 0.94206 1.01645 1.01840 1.20537 0.96392 0.96197 0.93015
1.21830 1.00680 0.95164 1.01769 1.22250 0.97161 0.94653 0.85208
1.86464 1.77624 1.57485 1.16008 1.21596 1.01626 0.99008 0.92693
1.22028 0.96027 0.98951 0.90237 1.60740 1.59575 1.10313 1.00386
1.21449 0.95282 0.96049 0.89896 1.19375 0.95867 0.94411 0.89611
1.20238 1.05529 0.86802 1.40676 0.91093 1.25026 0.98045 0.94493
0.94667 1.69944 1.31490 1.06744 1.45815 0.87209 0.80890 0.83824
0.79186 1.22635 1.23401 1.11516 1.22857 0.92511 1.02004 1.05715
1.22880 1.01069 1.01005 0.97600 0.92396 0.92282 0.93040 0.92943
0.92330 0.92331 0.93679 0.93711 0.77937 0.91001 0.91904 0.95839
0.91521 0.82667 0.96089 0.93588 0.92845 0.89965 0.90920 0.91305
0.89761
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.64 7.98 37.16 0.30 -1.35 16
2 C -0.06 -0.74 0.63 -154.51 -0.10 -0.84 16
3 C -0.14 -1.64 7.98 37.16 0.30 -1.34 16
4 C 0.08 0.93 5.91 37.15 0.22 1.14 16
5 O -0.57 -5.89 12.31 -35.23 -0.43 -6.32 16
6 C -0.11 -1.58 4.48 -26.73 -0.12 -1.70 16
7 C 0.06 0.89 4.98 -3.82 -0.02 0.88 16
8 N -0.68 -13.30 3.53 -113.78 -0.40 -13.71 16
9 C 0.10 2.07 5.61 -3.83 -0.02 2.05 16
10 C 0.01 0.20 1.37 -155.66 -0.21 -0.02 16
11 C -0.50 -13.65 8.70 -34.44 -0.30 -13.95 16
12 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16
13 C 0.08 2.28 5.20 -17.82 -0.09 2.19 16
14 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16
15 Si 0.86 21.54 23.15 -169.99 -3.94 17.61 16
16 H -0.30 -7.70 7.07 56.52 0.40 -7.30 16
17 H -0.31 -7.85 7.11 56.52 0.40 -7.45 16
18 H -0.19 -4.51 5.02 56.52 0.28 -4.23 16
19 C -0.19 -4.25 7.25 -26.69 -0.19 -4.44 16
20 C -0.19 -3.90 9.96 -26.69 -0.27 -4.17 16
21 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16
22 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16
23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
25 H 0.06 0.69 7.68 -51.93 -0.40 0.29 16
26 H 0.06 0.70 6.33 -51.93 -0.33 0.37 16
27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16
28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16
29 H 0.37 2.19 9.12 45.56 0.42 2.61 16
30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
32 H 0.02 0.36 6.68 -51.93 -0.35 0.01 16
33 H 0.07 1.01 6.19 -51.93 -0.32 0.69 16
34 H 0.35 7.60 7.11 -39.29 -0.28 7.32 16
35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16
37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
38 H 0.08 1.94 6.55 -51.93 -0.34 1.60 16
39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16
40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
41 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16
LS Contribution 311.93 15.07 4.70 4.70
Total: -1.00 -30.66 311.93 -6.47 -37.13
By element:
Atomic # 1 Polarization: 15.50 SS G_CDS: -6.66 Total: 8.84 kcal
Atomic # 6 Polarization: -21.03 SS G_CDS: -0.51 Total: -21.54 kcal
Atomic # 7 Polarization: -40.79 SS G_CDS: 0.37 Total: -40.41 kcal
Atomic # 8 Polarization: -5.89 SS G_CDS: -0.43 Total: -6.32 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -3.94 Total: 17.61 kcal
Total LS contribution 4.70 Total: 4.70 kcal
Total: -30.66 -6.47 -37.13 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385947478.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.152 kcal
(2) G-P(sol) polarization free energy of solvation -30.660 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.509 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.468 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.976 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds