Wall clock time and date at job start Mon Mar 30 2020 04:06:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53003 * 109.46979 * 2 1
4 4 C 1.52995 * 109.47227 * 240.00352 * 2 1 3
5 5 O 1.42903 * 109.47523 * 59.99630 * 4 2 1
6 6 C 1.52995 * 109.47000 * 119.99798 * 2 1 3
7 7 C 1.53004 * 109.47447 * 300.00217 * 6 2 1
8 8 N 1.46897 * 109.46952 * 184.72119 * 7 6 2
9 9 C 1.46901 * 110.99783 * 184.86873 * 8 7 6
10 10 C 1.52997 * 109.47049 * 185.32570 * 9 8 7
11 11 C 1.50698 * 115.55153 * 305.30009 * 10 9 8
12 12 H 1.08000 * 120.00351 * 275.48371 * 11 10 9
13 13 C 1.37881 * 119.99676 * 95.20862 * 11 10 9
14 14 N 1.31512 * 119.99933 * 175.54134 * 13 11 10
15 15 Si 1.86801 * 119.99965 * 355.54020 * 13 11 10
16 16 H 1.48501 * 109.47029 * 94.99899 * 15 13 11
17 17 H 1.48495 * 109.47173 * 214.99773 * 15 13 11
18 18 H 1.48493 * 109.47053 * 335.00101 * 15 13 11
19 19 C 1.53001 * 117.50109 * 90.97439 * 10 9 8
20 20 C 1.53004 * 117.49753 * 159.63270 * 10 9 8
21 21 H 1.08997 * 109.46878 * 299.99933 * 1 2 3
22 22 H 1.09005 * 109.47066 * 60.00036 * 1 2 3
23 23 H 1.09000 * 109.46704 * 179.97438 * 1 2 3
24 24 H 1.08998 * 109.47429 * 180.02562 * 3 2 1
25 25 H 1.08996 * 109.47051 * 300.00084 * 3 2 1
26 26 H 1.09007 * 109.47230 * 59.99728 * 3 2 1
27 27 H 1.09000 * 109.47244 * 180.02562 * 4 2 1
28 28 H 1.09004 * 109.46879 * 299.99965 * 4 2 1
29 29 H 0.96702 * 113.99994 * 180.02562 * 5 4 2
30 30 H 1.09000 * 109.47255 * 179.97438 * 6 2 1
31 31 H 1.09000 * 109.47209 * 60.00533 * 6 2 1
32 32 H 1.08993 * 109.46907 * 64.71934 * 7 6 2
33 33 H 1.09006 * 109.46813 * 304.72069 * 7 6 2
34 34 H 1.00897 * 111.00238 * 308.82035 * 8 7 6
35 35 H 1.09003 * 109.47439 * 65.32538 * 9 8 7
36 36 H 1.09004 * 109.47060 * 305.32589 * 9 8 7
37 37 H 0.97000 * 119.99837 * 179.97438 * 14 13 11
38 38 H 1.08995 * 117.50244 * 215.00178 * 19 10 9
39 39 H 1.09006 * 117.49632 * 0.02562 * 19 10 9
40 40 H 1.09002 * 117.50150 * 359.97438 * 20 10 9
41 41 H 1.09000 * 117.49835 * 144.97371 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0401 -0.7211 -1.2492
5 8 1.5637 -0.0475 -2.4161
6 6 2.0400 -0.7212 1.2492
7 6 1.5300 0.0000 2.4985
8 7 2.1105 -0.6235 3.6952
9 6 1.5543 -0.0321 4.9194
10 6 2.2757 -0.6103 6.1385
11 6 2.2804 -2.1140 6.2382
12 1 1.4410 -2.6284 6.6821
13 6 3.3540 -2.8333 5.7576
14 7 3.3988 -4.1372 5.9229
15 14 4.7449 -1.9558 4.8716
16 1 5.8329 -1.6531 5.8358
17 1 5.2703 -2.8270 3.7899
18 1 4.2371 -0.6898 4.2848
19 6 3.5107 0.1354 6.6480
20 6 2.2042 0.1841 7.4441
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 3.1300 1.4426 -0.0005
25 1 1.6767 1.9563 -0.8899
26 1 1.6766 1.9564 0.8900
27 1 3.1301 -0.7215 -1.2490
28 1 1.6767 -1.7488 -1.2493
29 1 1.8488 -0.4513 -3.2472
30 1 3.1300 -0.7216 1.2490
31 1 1.6768 -1.7489 1.2492
32 1 0.4433 -0.0726 2.5418
33 1 1.8226 1.0493 2.4572
34 1 1.9760 -1.6234 3.6833
35 1 0.4908 -0.2624 4.9835
36 1 1.6911 1.0491 4.8952
37 1 4.1540 -4.6433 5.5845
38 1 4.3266 -0.4615 7.0553
39 1 3.8090 1.0382 6.1149
40 1 1.6436 1.1189 7.4346
41 1 2.1602 -0.3809 8.3752
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385947478.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:06:37
Heat of formation + Delta-G solvation = -57.821908 kcal
Electronic energy + Delta-G solvation = -18176.091553 eV
Core-core repulsion = 15476.477381 eV
Total energy + Delta-G solvation = -2699.614172 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.74133 -38.89678 -36.82909 -34.97071 -34.16004 -29.90126 -28.15420 -27.74835
-27.38621 -25.66288 -23.31579 -22.85416 -20.72473 -19.56758 -18.33833 -18.11322
-16.78379 -16.62934 -16.16854 -15.92405 -15.69590 -15.16943 -14.81127 -14.64193
-14.30997 -13.90555 -13.62044 -13.50639 -13.36793 -12.93926 -12.64759 -12.59906
-12.35920 -12.12546 -11.98311 -11.72930 -11.59086 -11.54454 -11.33238 -11.21642
-10.83878 -10.83011 -10.59528 -10.20072 -8.86290 -8.22156 -6.31208 1.47563
1.55819 1.93025 2.57702 3.07270 3.15955 3.35136 3.73042 3.86203
3.94839 4.15280 4.18953 4.33943 4.42774 4.50246 4.56436 4.60842
4.63812 4.72561 4.77214 4.83377 4.88222 4.91250 4.92895 5.06534
5.08060 5.13104 5.14525 5.22469 5.28504 5.41088 5.51344 5.52539
5.53485 5.81441 6.32951 6.42948 6.60624 6.80021 6.93128 7.42514
8.91008
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.028011 B = 0.006254 C = 0.005731
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 999.361437 B = 4476.327322 C = 4884.846452
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.060 4.060
3 C -0.133 4.133
4 C 0.087 3.913
5 O -0.583 6.583
6 C -0.107 4.107
7 C 0.060 3.940
8 N -0.690 5.690
9 C 0.111 3.889
10 C -0.018 4.018
11 C -0.489 4.489
12 H 0.025 0.975
13 C 0.032 3.968
14 N -0.954 5.954
15 Si 0.922 3.078
16 H -0.308 1.308
17 H -0.316 1.316
18 H -0.161 1.161
19 C -0.190 4.190
20 C -0.172 4.172
21 H 0.056 0.944
22 H 0.059 0.941
23 H 0.048 0.952
24 H 0.052 0.948
25 H 0.058 0.942
26 H 0.059 0.941
27 H 0.049 0.951
28 H 0.047 0.953
29 H 0.394 0.606
30 H 0.064 0.936
31 H 0.055 0.945
32 H 0.030 0.970
33 H 0.079 0.921
34 H 0.337 0.663
35 H 0.018 0.982
36 H 0.073 0.927
37 H 0.261 0.739
38 H 0.060 0.940
39 H 0.102 0.898
40 H 0.107 0.893
41 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.835 11.480 -14.698 18.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.061 4.061
3 C -0.190 4.190
4 C 0.009 3.991
5 O -0.390 6.390
6 C -0.145 4.145
7 C -0.069 4.069
8 N -0.321 5.321
9 C -0.019 4.019
10 C -0.019 4.019
11 C -0.527 4.527
12 H 0.043 0.957
13 C -0.166 4.166
14 N -0.593 5.593
15 Si 0.749 3.251
16 H -0.237 1.237
17 H -0.245 1.245
18 H -0.081 1.081
19 C -0.227 4.227
20 C -0.209 4.209
21 H 0.075 0.925
22 H 0.078 0.922
23 H 0.067 0.933
24 H 0.071 0.929
25 H 0.077 0.923
26 H 0.077 0.923
27 H 0.067 0.933
28 H 0.065 0.935
29 H 0.243 0.757
30 H 0.083 0.917
31 H 0.074 0.926
32 H 0.048 0.952
33 H 0.098 0.902
34 H 0.156 0.844
35 H 0.036 0.964
36 H 0.092 0.908
37 H 0.070 0.930
38 H 0.079 0.921
39 H 0.120 0.880
40 H 0.125 0.875
41 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.493 12.141 -14.298 18.922
hybrid contribution 0.197 -1.551 -0.226 1.579
sum -2.297 10.590 -14.524 18.121
Atomic orbital electron populations
1.21792 0.94033 1.01503 1.01816 1.20502 0.96468 0.96348 0.92738
1.21788 1.00643 0.94778 1.01821 1.22156 0.97350 0.94540 0.85063
1.86409 1.77859 1.57924 1.16839 1.21538 1.01083 0.98772 0.93094
1.22092 0.96308 0.99355 0.89145 1.60725 1.60357 1.09460 1.01598
1.21343 0.94611 0.97238 0.88663 1.19384 0.98232 0.91850 0.92441
1.20403 1.03604 0.89694 1.38965 0.95721 1.25775 1.00523 0.94782
0.95509 1.70082 1.32568 1.08602 1.48082 0.86335 0.77446 0.83823
0.77481 1.23677 1.24507 1.08123 1.22861 0.91753 1.02298 1.05741
1.22927 1.00502 1.01713 0.95799 0.92481 0.92178 0.93268 0.92933
0.92262 0.92253 0.93253 0.93481 0.75690 0.91732 0.92635 0.95234
0.90236 0.84399 0.96379 0.90831 0.93027 0.92149 0.88022 0.87514
0.91084
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.92 7.98 71.98 0.57 -2.35 16
2 C -0.06 -1.33 0.63 -52.18 -0.03 -1.36 16
3 C -0.13 -2.82 7.98 71.98 0.57 -2.25 16
4 C 0.09 1.70 5.91 71.98 0.43 2.13 16
5 O -0.58 -10.61 12.31 -148.98 -1.83 -12.44 16
6 C -0.11 -2.82 4.48 30.59 0.14 -2.69 16
7 C 0.06 1.72 4.98 86.31 0.43 2.15 16
8 N -0.69 -25.55 3.53 -513.89 -1.81 -27.36 16
9 C 0.11 4.16 5.61 86.30 0.48 4.65 16
10 C -0.02 -0.80 1.37 -52.93 -0.07 -0.87 16
11 C -0.49 -27.45 8.70 25.60 0.22 -27.22 16
12 H 0.02 1.57 8.06 -2.91 -0.02 1.54 16
13 C 0.03 1.82 5.20 84.66 0.44 2.26 16
14 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16
15 Si 0.92 44.87 23.15 68.60 1.59 46.45 16
16 H -0.31 -15.39 7.07 99.48 0.70 -14.69 16
17 H -0.32 -15.82 7.11 99.48 0.71 -15.11 16
18 H -0.16 -6.94 5.02 99.48 0.50 -6.44 16
19 C -0.19 -7.74 7.25 30.62 0.22 -7.52 16
20 C -0.17 -6.67 9.96 30.62 0.30 -6.36 16
21 H 0.06 1.23 6.54 -2.39 -0.02 1.22 16
22 H 0.06 1.30 7.68 -2.38 -0.02 1.28 16
23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16
24 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16
25 H 0.06 1.25 7.68 -2.39 -0.02 1.23 16
26 H 0.06 1.23 6.33 -2.38 -0.02 1.21 16
27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
28 H 0.05 0.89 8.14 -2.38 -0.02 0.88 16
29 H 0.39 3.65 9.12 -74.06 -0.68 2.98 16
30 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
32 H 0.03 0.83 6.68 -2.39 -0.02 0.81 16
33 H 0.08 2.12 6.19 -2.38 -0.01 2.10 16
34 H 0.34 14.27 7.11 -89.70 -0.64 13.64 16
35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
36 H 0.07 2.39 8.08 -2.38 -0.02 2.37 16
37 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16
38 H 0.06 2.74 6.55 -2.39 -0.02 2.72 16
39 H 0.10 3.59 8.14 -2.38 -0.02 3.57 16
40 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16
41 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16
Total: -1.00 -66.52 311.93 1.43 -65.09
By element:
Atomic # 1 Polarization: 27.99 SS G_CDS: -0.52 Total: 27.47 kcal
Atomic # 6 Polarization: -43.15 SS G_CDS: 3.71 Total: -39.44 kcal
Atomic # 7 Polarization: -85.62 SS G_CDS: -1.51 Total: -87.13 kcal
Atomic # 8 Polarization: -10.61 SS G_CDS: -1.83 Total: -12.44 kcal
Atomic # 14 Polarization: 44.87 SS G_CDS: 1.59 Total: 46.45 kcal
Total: -66.52 1.43 -65.09 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385947478.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.271 kcal
(2) G-P(sol) polarization free energy of solvation -66.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.247 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.092 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.822 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds