Wall clock time and date at job start Mon Mar 30 2020 03:25:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 110.28567 * 2 1
4 4 C 1.54380 * 110.32546 * 237.76924 * 2 1 3
5 5 N 1.48550 * 104.59382 * 217.25092 * 4 2 1
6 6 C 1.46902 * 111.00067 * 159.03911 * 5 4 2
7 7 C 1.53000 * 109.47051 * 59.26748 * 6 5 4
8 8 C 1.53007 * 109.47108 * 174.74683 * 7 6 5
9 9 C 1.52999 * 109.46772 * 179.97438 * 8 7 6
10 10 C 1.50705 * 109.46725 * 179.97438 * 9 8 7
11 11 H 1.08004 * 120.00001 * 0.02562 * 10 9 8
12 12 C 1.37871 * 119.99877 * 179.97438 * 10 9 8
13 13 N 1.31519 * 120.00484 * 0.02562 * 12 10 9
14 14 Si 1.86802 * 120.00101 * 180.02562 * 12 10 9
15 15 H 1.48498 * 109.47112 * 60.00015 * 14 12 10
16 16 H 1.48500 * 109.47226 * 180.02562 * 14 12 10
17 17 H 1.48505 * 109.46834 * 300.00517 * 14 12 10
18 18 C 1.48558 * 104.22541 * 39.48402 * 5 4 2
19 19 C 1.54254 * 110.32223 * 122.13008 * 2 1 3
20 20 H 1.08994 * 110.32658 * 0.02562 * 19 2 1
21 21 O 1.42900 * 110.32138 * 237.89138 * 19 2 1
22 22 H 1.09000 * 109.47483 * 297.86863 * 1 2 3
23 23 H 1.08997 * 109.47302 * 177.86870 * 1 2 3
24 24 H 1.09006 * 109.47628 * 57.87099 * 1 2 3
25 25 H 1.09010 * 109.46763 * 60.70216 * 3 2 1
26 26 H 1.08994 * 109.46874 * 180.69584 * 3 2 1
27 27 H 1.08999 * 109.47257 * 300.70785 * 3 2 1
28 28 H 1.09003 * 110.41010 * 336.03271 * 4 2 1
29 29 H 1.09000 * 110.41240 * 98.46333 * 4 2 1
30 30 H 1.09001 * 109.46966 * 179.26260 * 6 5 4
31 31 H 1.09001 * 109.47336 * 299.26667 * 6 5 4
32 32 H 1.09010 * 109.46815 * 294.73846 * 7 6 5
33 33 H 1.08994 * 109.47446 * 54.73720 * 7 6 5
34 34 H 1.09003 * 109.46246 * 299.99322 * 8 7 6
35 35 H 1.08994 * 109.47268 * 59.99440 * 8 7 6
36 36 H 1.08994 * 109.47342 * 299.99469 * 9 8 7
37 37 H 1.08994 * 109.47541 * 59.99779 * 9 8 7
38 38 H 0.96998 * 120.00536 * 179.97438 * 13 12 10
39 39 H 1.09000 * 110.41460 * 201.74373 * 18 5 4
40 40 H 1.08991 * 110.51823 * 79.34197 * 18 5 4
41 41 H 0.96705 * 114.00249 * 179.97438 * 21 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0605 1.4351 0.0000
4 6 2.0662 -0.7721 -1.2246
5 7 3.2693 -1.4834 -0.7212
6 6 3.6068 -2.6230 -1.5845
7 6 3.8724 -2.1246 -3.0064
8 6 4.3507 -3.2902 -3.8745
9 6 4.6157 -2.7918 -5.2966
10 6 5.0874 -3.9398 -6.1514
11 1 5.1876 -4.9263 -5.7233
12 6 5.3898 -3.7310 -7.4802
13 7 5.2673 -2.5299 -8.0017
14 14 5.9738 -5.1541 -8.5401
15 1 4.9292 -6.2091 -8.5714
16 1 6.2311 -4.6704 -9.9203
17 1 7.2259 -5.7140 -7.9707
18 6 2.8806 -1.9416 0.6375
19 6 2.0657 -0.7693 1.2250
20 1 1.2388 -1.1473 1.8260
21 8 2.9060 0.0760 2.0133
22 1 -0.3634 0.4804 0.9085
23 1 -0.3634 -1.0269 -0.0382
24 1 -0.3634 0.5466 -0.8703
25 1 1.7147 1.9503 0.8963
26 1 3.1502 1.4196 -0.0125
27 1 1.6942 1.9579 -0.8835
28 1 1.3229 -1.4862 -1.5791
29 1 2.3393 -0.0796 -2.0209
30 1 4.4988 -3.1180 -1.2005
31 1 2.7761 -3.3287 -1.5961
32 1 2.9537 -1.7132 -3.4248
33 1 4.6394 -1.3505 -2.9828
34 1 5.2694 -3.7016 -3.4562
35 1 3.5837 -4.0643 -3.8981
36 1 3.6969 -2.3807 -5.7146
37 1 5.3825 -2.0176 -5.2733
38 1 5.4804 -2.3829 -8.9365
39 1 3.7670 -2.1296 1.2433
40 1 2.2654 -2.8392 0.5765
41 1 3.2718 -0.3546 2.7981
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000387847660.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:29
Heat of formation + Delta-G solvation = -73.410795 kcal
Electronic energy + Delta-G solvation = -17643.169806 eV
Core-core repulsion = 14942.879649 eV
Total energy + Delta-G solvation = -2700.290157 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.96483 -36.37473 -34.89819 -33.69529 -32.07198 -29.39355 -27.73394 -27.17745
-25.92343 -24.01652 -22.09103 -20.72241 -20.09592 -18.98832 -17.25045 -16.19707
-15.95862 -15.69156 -14.70900 -14.43546 -14.28611 -13.67627 -13.53290 -13.45141
-12.84674 -12.66276 -12.33502 -12.23867 -12.05356 -11.70000 -11.60992 -11.26150
-11.04127 -10.95678 -10.73355 -10.56703 -10.52556 -10.47152 -10.31521 -10.05843
-9.59654 -9.22529 -8.98197 -8.40224 -8.30038 -5.95304 -3.97670 3.35619
3.39775 3.42345 3.95925 4.05927 4.37945 4.47049 4.50687 4.88328
4.98146 5.14771 5.28732 5.34236 5.37686 5.40092 5.50140 5.52426
5.60015 5.71829 5.76264 5.84669 5.91540 5.92972 6.10139 6.12824
6.14370 6.29660 6.44151 6.51687 6.82239 6.88860 6.99327 7.09085
7.25831 7.52282 7.73273 7.89696 8.05725 8.48445 9.09582 9.66001
11.16019
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.048218 B = 0.003740 C = 0.003629
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 580.559216 B = 7485.501087 C = 7713.471293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.064 4.064
3 C -0.118 4.118
4 C 0.040 3.960
5 N -0.502 5.502
6 C 0.045 3.955
7 C -0.115 4.115
8 C -0.109 4.109
9 C 0.021 3.979
10 C -0.521 4.521
11 H 0.053 0.947
12 C 0.056 3.944
13 N -0.896 5.896
14 Si 0.891 3.109
15 H -0.277 1.277
16 H -0.287 1.287
17 H -0.277 1.277
18 C 0.000 4.000
19 C 0.108 3.892
20 H 0.060 0.940
21 O -0.551 6.551
22 H 0.057 0.943
23 H 0.054 0.946
24 H 0.063 0.937
25 H 0.053 0.947
26 H 0.067 0.933
27 H 0.048 0.952
28 H 0.046 0.954
29 H 0.088 0.912
30 H 0.073 0.927
31 H 0.031 0.969
32 H 0.054 0.946
33 H 0.066 0.934
34 H 0.047 0.953
35 H 0.044 0.956
36 H 0.014 0.986
37 H 0.016 0.984
38 H 0.260 0.740
39 H 0.083 0.917
40 H 0.047 0.953
41 H 0.372 0.628
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.772 4.124 19.740 21.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.065 4.065
3 C -0.175 4.175
4 C -0.088 4.088
5 N -0.226 5.226
6 C -0.083 4.083
7 C -0.152 4.152
8 C -0.147 4.147
9 C -0.016 4.016
10 C -0.559 4.559
11 H 0.072 0.928
12 C -0.145 4.145
13 N -0.536 5.536
14 Si 0.719 3.281
15 H -0.203 1.203
16 H -0.213 1.213
17 H -0.203 1.203
18 C -0.129 4.129
19 C 0.049 3.951
20 H 0.078 0.922
21 O -0.356 6.356
22 H 0.076 0.924
23 H 0.073 0.927
24 H 0.082 0.918
25 H 0.072 0.928
26 H 0.086 0.914
27 H 0.067 0.933
28 H 0.064 0.936
29 H 0.106 0.894
30 H 0.092 0.908
31 H 0.049 0.951
32 H 0.073 0.927
33 H 0.084 0.916
34 H 0.066 0.934
35 H 0.063 0.937
36 H 0.032 0.968
37 H 0.034 0.966
38 H 0.070 0.930
39 H 0.101 0.899
40 H 0.065 0.935
41 H 0.219 0.781
Dipole moment (debyes) X Y Z Total
from point charges -8.422 4.989 19.103 21.465
hybrid contribution -0.224 -1.901 -0.326 1.942
sum -8.645 3.088 18.777 20.901
Atomic orbital electron populations
1.21906 0.93807 1.01785 1.02302 1.21380 0.94910 0.97150 0.93066
1.21483 1.02235 0.93230 1.00591 1.23286 0.91284 0.97395 0.96800
1.65447 1.32532 1.23258 1.01347 1.22436 1.00082 0.91382 0.94411
1.21670 1.01393 0.99847 0.92333 1.21597 0.99273 0.95968 0.97845
1.19083 0.96780 0.96389 0.89310 1.21255 1.44396 0.95422 0.94845
0.92844 1.25028 0.95781 0.95581 0.98089 1.69959 1.49177 1.20843
1.13587 0.86673 0.79271 0.82668 0.79463 1.20301 1.21289 1.20258
1.23855 0.99410 0.96668 0.92949 1.22582 0.91190 0.89538 0.91805
0.92231 1.86604 1.67517 1.40917 1.40555 0.92351 0.92702 0.91801
0.92770 0.91382 0.93280 0.93600 0.89369 0.90812 0.95111 0.92708
0.91562 0.93428 0.93746 0.96768 0.96589 0.92997 0.89873 0.93493
0.78113
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.25 8.25 37.16 0.31 -0.94 16
2 C -0.06 -0.70 1.03 -153.13 -0.16 -0.85 16
3 C -0.12 -1.34 7.48 37.16 0.28 -1.06 16
4 C 0.04 0.52 4.43 -2.19 -0.01 0.51 16
5 N -0.50 -6.92 5.45 -229.98 -1.25 -8.17 16
6 C 0.04 0.67 4.93 -3.82 -0.02 0.65 16
7 C -0.11 -2.05 4.92 -26.73 -0.13 -2.18 16
8 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16
9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16
10 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16
11 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16
12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
13 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16
14 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16
15 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
18 C 0.00 0.00 6.24 -2.18 -0.01 -0.02 16
19 C 0.11 1.08 4.04 -25.35 -0.10 0.98 16
20 H 0.06 0.50 7.71 -51.93 -0.40 0.10 16
21 O -0.55 -5.53 11.55 -35.23 -0.41 -5.94 16
22 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
23 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16
24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
25 H 0.05 0.59 7.95 -51.92 -0.41 0.18 16
26 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16
27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.05 0.58 7.67 -51.93 -0.40 0.18 16
29 H 0.09 1.21 7.50 -51.93 -0.39 0.82 16
30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
31 H 0.03 0.44 7.97 -51.93 -0.41 0.03 16
32 H 0.05 0.98 7.21 -51.92 -0.37 0.60 16
33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16
36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16
37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
38 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16
39 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16
40 H 0.05 0.49 7.90 -51.93 -0.41 0.08 16
41 H 0.37 2.17 9.12 45.56 0.42 2.59 16
LS Contribution 323.53 15.07 4.88 4.88
Total: -1.00 -31.86 323.53 -8.58 -40.44
By element:
Atomic # 1 Polarization: 4.42 SS G_CDS: -6.98 Total: -2.56 kcal
Atomic # 6 Polarization: -18.33 SS G_CDS: -0.54 Total: -18.87 kcal
Atomic # 7 Polarization: -34.46 SS G_CDS: -0.52 Total: -34.98 kcal
Atomic # 8 Polarization: -5.53 SS G_CDS: -0.41 Total: -5.94 kcal
Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -31.86 -8.58 -40.44 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000387847660.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.967 kcal
(2) G-P(sol) polarization free energy of solvation -31.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.827 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds