Wall clock time and date at job start Mon Mar 30 2020 03:25:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 110.28567 * 2 1
4 4 C 1.54380 * 110.32546 * 237.76924 * 2 1 3
5 5 N 1.48550 * 104.59382 * 217.25092 * 4 2 1
6 6 C 1.46902 * 111.00067 * 159.03911 * 5 4 2
7 7 C 1.53000 * 109.47051 * 59.26748 * 6 5 4
8 8 C 1.53007 * 109.47108 * 174.74683 * 7 6 5
9 9 C 1.52999 * 109.46772 * 179.97438 * 8 7 6
10 10 C 1.50705 * 109.46725 * 179.97438 * 9 8 7
11 11 H 1.08004 * 120.00001 * 0.02562 * 10 9 8
12 12 C 1.37871 * 119.99877 * 179.97438 * 10 9 8
13 13 N 1.31519 * 120.00484 * 0.02562 * 12 10 9
14 14 Si 1.86802 * 120.00101 * 180.02562 * 12 10 9
15 15 H 1.48498 * 109.47112 * 60.00015 * 14 12 10
16 16 H 1.48500 * 109.47226 * 180.02562 * 14 12 10
17 17 H 1.48505 * 109.46834 * 300.00517 * 14 12 10
18 18 C 1.48558 * 104.22541 * 39.48402 * 5 4 2
19 19 C 1.54254 * 110.32223 * 122.13008 * 2 1 3
20 20 H 1.08994 * 110.32658 * 0.02562 * 19 2 1
21 21 O 1.42900 * 110.32138 * 237.89138 * 19 2 1
22 22 H 1.09000 * 109.47483 * 297.86863 * 1 2 3
23 23 H 1.08997 * 109.47302 * 177.86870 * 1 2 3
24 24 H 1.09006 * 109.47628 * 57.87099 * 1 2 3
25 25 H 1.09010 * 109.46763 * 60.70216 * 3 2 1
26 26 H 1.08994 * 109.46874 * 180.69584 * 3 2 1
27 27 H 1.08999 * 109.47257 * 300.70785 * 3 2 1
28 28 H 1.09003 * 110.41010 * 336.03271 * 4 2 1
29 29 H 1.09000 * 110.41240 * 98.46333 * 4 2 1
30 30 H 1.09001 * 109.46966 * 179.26260 * 6 5 4
31 31 H 1.09001 * 109.47336 * 299.26667 * 6 5 4
32 32 H 1.09010 * 109.46815 * 294.73846 * 7 6 5
33 33 H 1.08994 * 109.47446 * 54.73720 * 7 6 5
34 34 H 1.09003 * 109.46246 * 299.99322 * 8 7 6
35 35 H 1.08994 * 109.47268 * 59.99440 * 8 7 6
36 36 H 1.08994 * 109.47342 * 299.99469 * 9 8 7
37 37 H 1.08994 * 109.47541 * 59.99779 * 9 8 7
38 38 H 0.96998 * 120.00536 * 179.97438 * 13 12 10
39 39 H 1.09000 * 110.41460 * 201.74373 * 18 5 4
40 40 H 1.08991 * 110.51823 * 79.34197 * 18 5 4
41 41 H 0.96705 * 114.00249 * 179.97438 * 21 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0605 1.4351 0.0000
4 6 2.0662 -0.7721 -1.2246
5 7 3.2693 -1.4834 -0.7212
6 6 3.6068 -2.6230 -1.5845
7 6 3.8724 -2.1246 -3.0064
8 6 4.3507 -3.2902 -3.8745
9 6 4.6157 -2.7918 -5.2966
10 6 5.0874 -3.9398 -6.1514
11 1 5.1876 -4.9263 -5.7233
12 6 5.3898 -3.7310 -7.4802
13 7 5.2673 -2.5299 -8.0017
14 14 5.9738 -5.1541 -8.5401
15 1 4.9292 -6.2091 -8.5714
16 1 6.2311 -4.6704 -9.9203
17 1 7.2259 -5.7140 -7.9707
18 6 2.8806 -1.9416 0.6375
19 6 2.0657 -0.7693 1.2250
20 1 1.2388 -1.1473 1.8260
21 8 2.9060 0.0760 2.0133
22 1 -0.3634 0.4804 0.9085
23 1 -0.3634 -1.0269 -0.0382
24 1 -0.3634 0.5466 -0.8703
25 1 1.7147 1.9503 0.8963
26 1 3.1502 1.4196 -0.0125
27 1 1.6942 1.9579 -0.8835
28 1 1.3229 -1.4862 -1.5791
29 1 2.3393 -0.0796 -2.0209
30 1 4.4988 -3.1180 -1.2005
31 1 2.7761 -3.3287 -1.5961
32 1 2.9537 -1.7132 -3.4248
33 1 4.6394 -1.3505 -2.9828
34 1 5.2694 -3.7016 -3.4562
35 1 3.5837 -4.0643 -3.8981
36 1 3.6969 -2.3807 -5.7146
37 1 5.3825 -2.0176 -5.2733
38 1 5.4804 -2.3829 -8.9365
39 1 3.7670 -2.1296 1.2433
40 1 2.2654 -2.8392 0.5765
41 1 3.2718 -0.3546 2.7981
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000387847660.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:28
Heat of formation + Delta-G solvation = -95.896482 kcal
Electronic energy + Delta-G solvation = -17644.144859 eV
Core-core repulsion = 14942.879649 eV
Total energy + Delta-G solvation = -2701.265209 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.86213 -37.49440 -36.18164 -35.15474 -33.85408 -30.83466 -28.91431 -28.06561
-27.24552 -25.57932 -23.34689 -22.06251 -21.69127 -19.91554 -18.42399 -17.99834
-17.00425 -16.74685 -16.42397 -16.01995 -15.28521 -14.81730 -14.57398 -14.43091
-14.28466 -13.94914 -13.71208 -13.44939 -13.26859 -13.02326 -12.83143 -12.78581
-12.47201 -12.34383 -12.20211 -12.01263 -11.88529 -11.58492 -11.40122 -11.36514
-11.28893 -11.10566 -10.72351 -10.55729 -9.42592 -8.20185 -6.32295 1.39104
1.42834 1.50838 2.40634 2.99989 3.12324 3.31543 3.51320 3.65018
4.02102 4.09694 4.15377 4.19844 4.36998 4.46518 4.52049 4.54375
4.64731 4.70474 4.77029 4.81167 4.84730 4.86712 4.94195 5.04671
5.09231 5.19067 5.25547 5.25676 5.31442 5.32090 5.52300 5.53211
5.75033 5.84592 5.89267 6.06119 6.24569 6.84878 6.99029 7.37166
8.91624
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.048218 B = 0.003740 C = 0.003629
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 580.559216 B = 7485.501087 C = 7713.471293
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.067 4.067
3 C -0.113 4.113
4 C 0.038 3.962
5 N -0.521 5.521
6 C 0.056 3.944
7 C -0.103 4.103
8 C -0.096 4.096
9 C 0.023 3.977
10 C -0.547 4.547
11 H 0.061 0.939
12 C -0.002 4.002
13 N -0.935 5.935
14 Si 0.967 3.033
15 H -0.265 1.265
16 H -0.282 1.282
17 H -0.266 1.266
18 C -0.001 4.001
19 C 0.113 3.887
20 H 0.084 0.916
21 O -0.568 6.568
22 H 0.070 0.930
23 H 0.062 0.938
24 H 0.062 0.938
25 H 0.059 0.941
26 H 0.043 0.957
27 H 0.049 0.951
28 H 0.048 0.952
29 H 0.068 0.932
30 H 0.077 0.923
31 H 0.040 0.960
32 H 0.050 0.950
33 H 0.051 0.949
34 H 0.052 0.948
35 H 0.051 0.949
36 H -0.011 1.011
37 H -0.013 1.013
38 H 0.264 0.736
39 H 0.090 0.910
40 H 0.058 0.942
41 H 0.390 0.610
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.387 2.699 21.066 23.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.067 4.067
3 C -0.170 4.170
4 C -0.090 4.090
5 N -0.245 5.245
6 C -0.072 4.072
7 C -0.141 4.141
8 C -0.134 4.134
9 C -0.014 4.014
10 C -0.585 4.585
11 H 0.079 0.921
12 C -0.200 4.200
13 N -0.575 5.575
14 Si 0.791 3.209
15 H -0.190 1.190
16 H -0.208 1.208
17 H -0.191 1.191
18 C -0.129 4.129
19 C 0.054 3.946
20 H 0.102 0.898
21 O -0.375 6.375
22 H 0.089 0.911
23 H 0.081 0.919
24 H 0.081 0.919
25 H 0.079 0.921
26 H 0.062 0.938
27 H 0.068 0.932
28 H 0.066 0.934
29 H 0.086 0.914
30 H 0.096 0.904
31 H 0.058 0.942
32 H 0.069 0.931
33 H 0.069 0.931
34 H 0.070 0.930
35 H 0.070 0.930
36 H 0.007 0.993
37 H 0.006 0.994
38 H 0.072 0.928
39 H 0.108 0.892
40 H 0.076 0.924
41 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges -9.036 3.558 20.463 22.651
hybrid contribution -0.016 -1.392 -0.727 1.571
sum -9.052 2.165 19.737 21.821
Atomic orbital electron populations
1.21873 0.92096 1.02462 1.02924 1.21418 0.96263 0.96350 0.92712
1.21411 1.00605 0.94058 1.00929 1.23283 0.91089 0.97263 0.97379
1.65393 1.33530 1.22986 1.02572 1.22221 1.00673 0.91860 0.92474
1.21480 1.00489 0.98068 0.94096 1.21398 0.99834 0.97141 0.94992
1.19012 0.94493 0.95286 0.92598 1.21714 1.44741 0.96243 0.95762
0.92090 1.26034 0.95656 0.98623 0.99681 1.70104 1.49986 1.23289
1.14136 0.85471 0.79182 0.78929 0.77287 1.19017 1.20758 1.19101
1.23953 1.00181 0.97539 0.91198 1.22578 0.91618 0.88777 0.91675
0.89816 1.86565 1.67766 1.41634 1.41568 0.91113 0.91928 0.91900
0.92149 0.93765 0.93183 0.93411 0.91366 0.90430 0.94180 0.93134
0.93060 0.92973 0.92978 0.99307 0.99432 0.92751 0.89151 0.92390
0.76020
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.13 8.25 71.98 0.59 -1.53 16
2 C -0.07 -1.35 1.03 -51.29 -0.05 -1.40 16
3 C -0.11 -2.50 7.48 71.98 0.54 -1.96 16
4 C 0.04 0.95 4.43 86.45 0.38 1.33 16
5 N -0.52 -13.84 5.45 -881.51 -4.81 -18.65 16
6 C 0.06 1.61 4.93 86.30 0.43 2.03 16
7 C -0.10 -3.74 4.92 30.60 0.15 -3.58 16
8 C -0.10 -4.08 5.15 30.60 0.16 -3.92 16
9 C 0.02 1.28 4.97 29.85 0.15 1.43 16
10 C -0.55 -32.17 9.11 25.60 0.23 -31.94 16
11 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16
12 C 0.00 -0.14 5.46 84.65 0.46 0.32 16
13 N -0.93 -58.54 13.29 21.45 0.28 -58.25 16
14 Si 0.97 45.05 29.54 68.60 2.03 47.08 16
15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16
18 C 0.00 -0.01 6.24 86.45 0.54 0.53 16
19 C 0.11 1.97 4.04 31.49 0.13 2.10 16
20 H 0.08 1.10 7.71 -2.39 -0.02 1.08 16
21 O -0.57 -10.22 11.55 -148.98 -1.72 -11.94 16
22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
23 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16
24 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16
25 H 0.06 1.24 7.95 -2.38 -0.02 1.22 16
26 H 0.04 1.17 7.84 -2.39 -0.02 1.16 16
27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
28 H 0.05 1.16 7.67 -2.39 -0.02 1.14 16
29 H 0.07 1.94 7.50 -2.39 -0.02 1.92 16
30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16
31 H 0.04 1.08 7.97 -2.39 -0.02 1.06 16
32 H 0.05 1.84 7.21 -2.38 -0.02 1.83 16
33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16
35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16
37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16
38 H 0.26 15.48 8.31 -92.71 -0.77 14.70 16
39 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16
40 H 0.06 1.03 7.90 -2.39 -0.02 1.01 16
41 H 0.39 3.63 9.12 -74.05 -0.68 2.95 16
Total: -1.00 -68.72 323.53 -0.22 -68.94
By element:
Atomic # 1 Polarization: 9.12 SS G_CDS: 0.29 Total: 9.41 kcal
Atomic # 6 Polarization: -40.30 SS G_CDS: 3.71 Total: -36.59 kcal
Atomic # 7 Polarization: -72.38 SS G_CDS: -4.52 Total: -76.90 kcal
Atomic # 8 Polarization: -10.22 SS G_CDS: -1.72 Total: -11.94 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal
Total: -68.72 -0.22 -68.94 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000387847660.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.954 kcal
(2) G-P(sol) polarization free energy of solvation -68.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.678 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.896 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds