Wall clock time and date at job start Mon Mar 30 2020 03:25:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 110.36841 * 2 1
4 4 C 1.54375 * 110.32919 * 122.18232 * 2 1 3
5 5 N 1.48553 * 104.59703 * 95.04092 * 4 2 1
6 6 C 1.46909 * 111.00067 * 159.04190 * 5 4 2
7 7 C 1.53000 * 109.46991 * 170.00168 * 6 5 4
8 8 C 1.53001 * 109.46886 * 179.97438 * 7 6 5
9 9 C 1.53000 * 109.46886 * 180.02562 * 8 7 6
10 10 C 1.50703 * 109.46912 * 180.02562 * 9 8 7
11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 8
12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8
13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9
14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9
15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10
16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10
17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10
18 18 C 1.48562 * 104.21980 * 39.48997 * 5 4 2
19 19 C 1.54266 * 110.32625 * 237.82199 * 2 1 3
20 20 H 1.08994 * 110.32217 * 359.97438 * 19 2 1
21 21 O 1.42903 * 110.32571 * 122.10092 * 19 2 1
22 22 H 1.08992 * 109.47287 * 299.27244 * 1 2 3
23 23 H 1.09001 * 109.47362 * 59.27727 * 1 2 3
24 24 H 1.09008 * 109.46852 * 179.27340 * 1 2 3
25 25 H 1.08993 * 109.47471 * 180.72742 * 3 2 1
26 26 H 1.09003 * 109.47089 * 300.73063 * 3 2 1
27 27 H 1.08998 * 109.46962 * 60.72604 * 3 2 1
28 28 H 1.09007 * 110.40590 * 336.26461 * 4 2 1
29 29 H 1.08995 * 110.41282 * 213.82787 * 4 2 1
30 30 H 1.08992 * 109.46677 * 50.00550 * 6 5 4
31 31 H 1.09001 * 109.46574 * 290.00317 * 6 5 4
32 32 H 1.09001 * 109.46741 * 60.00192 * 7 6 5
33 33 H 1.09002 * 109.47398 * 300.00295 * 7 6 5
34 34 H 1.09001 * 109.46652 * 60.00345 * 8 7 6
35 35 H 1.08992 * 109.47514 * 300.00434 * 8 7 6
36 36 H 1.09002 * 109.47398 * 300.00496 * 9 8 7
37 37 H 1.09001 * 109.47194 * 60.00677 * 9 8 7
38 38 H 0.97000 * 120.00333 * 179.97438 * 13 12 10
39 39 H 1.08994 * 110.41298 * 79.29278 * 18 5 4
40 40 H 1.09006 * 110.41380 * 201.73510 * 18 5 4
41 41 H 0.96694 * 113.99463 * 179.97438 * 21 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0625 1.4344 0.0000
4 6 2.0663 -0.7710 1.2252
5 7 2.3148 -2.1466 0.7224
6 6 3.2651 -2.8594 1.5868
7 6 3.3066 -4.3364 1.1899
8 6 4.2968 -5.0786 2.0897
9 6 4.3387 -6.5555 1.6925
10 6 5.3136 -7.2867 2.5791
11 1 5.8492 -6.7516 3.3492
12 6 5.5216 -8.6388 2.4072
13 7 4.8689 -9.2906 1.4697
14 14 6.7294 -9.5452 3.5068
15 1 6.0185 -10.0593 4.7049
16 1 7.3235 -10.6818 2.7580
17 1 7.8065 -8.6152 3.9312
18 6 2.8807 -1.9421 -0.6358
19 6 2.0658 -0.7704 -1.2244
20 1 1.2389 -1.1489 -1.8251
21 8 2.9060 0.0743 -2.0135
22 1 -0.3633 0.5024 0.8964
23 1 -0.3634 0.5250 -0.8834
24 1 -0.3633 -1.0277 -0.0130
25 1 3.1522 1.4174 -0.0130
26 1 1.6966 1.9578 -0.8834
27 1 1.7179 1.9499 0.8964
28 1 1.3213 -0.7858 2.0208
29 1 2.9941 -0.3226 1.5803
30 1 2.9478 -2.7711 2.6258
31 1 4.2578 -2.4241 1.4717
32 1 3.6238 -4.4246 0.1509
33 1 2.3138 -4.7716 1.3049
34 1 3.9799 -4.9904 3.1289
35 1 5.2893 -4.6434 1.9743
36 1 3.3462 -6.9911 1.8075
37 1 4.6559 -6.6434 0.6533
38 1 5.0155 -10.2417 1.3485
39 1 3.9360 -1.6769 -0.5720
40 1 2.7491 -2.8387 -1.2416
41 1 3.2724 -0.3573 -2.7975
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000387847662.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:31
Heat of formation + Delta-G solvation = -74.730072 kcal
Electronic energy + Delta-G solvation = -17548.315074 eV
Core-core repulsion = 14847.967709 eV
Total energy + Delta-G solvation = -2700.347365 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.96531 -36.39218 -35.03995 -33.67212 -32.02085 -29.25614 -28.05270 -27.39526
-25.59753 -23.89285 -22.29062 -20.72913 -20.03769 -19.05802 -17.50219 -16.19689
-15.86980 -15.23484 -14.72912 -14.52983 -14.40162 -14.20705 -13.68580 -13.25480
-12.75751 -12.53881 -12.34185 -12.27323 -12.02478 -11.80768 -11.67165 -11.40702
-11.11056 -10.94021 -10.87396 -10.56803 -10.45650 -10.43063 -10.33481 -10.05451
-9.60087 -9.23968 -8.98570 -8.47567 -8.31251 -5.96434 -3.98618 3.33664
3.39576 3.43156 3.77198 4.23625 4.33821 4.48320 4.52637 4.76862
5.08015 5.12808 5.24720 5.31536 5.39066 5.44617 5.51353 5.57072
5.64802 5.69420 5.75706 5.80594 5.87836 5.91795 6.00055 6.07768
6.13547 6.22760 6.27341 6.52457 6.77758 6.90193 6.98313 7.05297
7.24732 7.46044 7.72652 7.88685 8.04755 8.47666 9.08896 9.65142
11.14925
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.053482 B = 0.003557 C = 0.003510
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 523.414016 B = 7870.440934 C = 7975.965275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.063 4.063
3 C -0.123 4.123
4 C 0.039 3.961
5 N -0.505 5.505
6 C 0.045 3.955
7 C -0.110 4.110
8 C -0.110 4.110
9 C 0.021 3.979
10 C -0.520 4.520
11 H 0.054 0.946
12 C 0.055 3.945
13 N -0.896 5.896
14 Si 0.891 3.109
15 H -0.281 1.281
16 H -0.287 1.287
17 H -0.274 1.274
18 C 0.000 4.000
19 C 0.105 3.895
20 H 0.067 0.933
21 O -0.561 6.561
22 H 0.058 0.942
23 H 0.054 0.946
24 H 0.064 0.936
25 H 0.058 0.942
26 H 0.058 0.942
27 H 0.049 0.951
28 H 0.083 0.917
29 H 0.045 0.955
30 H 0.072 0.928
31 H 0.034 0.966
32 H 0.053 0.947
33 H 0.064 0.936
34 H 0.047 0.953
35 H 0.044 0.956
36 H 0.016 0.984
37 H 0.014 0.986
38 H 0.260 0.740
39 H 0.053 0.947
40 H 0.085 0.915
41 H 0.376 0.624
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.127 19.760 -5.038 21.602
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.064 4.064
3 C -0.181 4.181
4 C -0.089 4.089
5 N -0.230 5.230
6 C -0.082 4.082
7 C -0.148 4.148
8 C -0.148 4.148
9 C -0.016 4.016
10 C -0.558 4.558
11 H 0.072 0.928
12 C -0.145 4.145
13 N -0.536 5.536
14 Si 0.719 3.281
15 H -0.207 1.207
16 H -0.212 1.212
17 H -0.199 1.199
18 C -0.128 4.128
19 C 0.045 3.955
20 H 0.085 0.915
21 O -0.366 6.366
22 H 0.077 0.923
23 H 0.073 0.927
24 H 0.083 0.917
25 H 0.077 0.923
26 H 0.077 0.923
27 H 0.068 0.932
28 H 0.101 0.899
29 H 0.063 0.937
30 H 0.091 0.909
31 H 0.052 0.948
32 H 0.072 0.928
33 H 0.083 0.917
34 H 0.065 0.935
35 H 0.063 0.937
36 H 0.034 0.966
37 H 0.032 0.968
38 H 0.069 0.931
39 H 0.071 0.929
40 H 0.103 0.897
41 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges -7.783 19.693 -4.650 21.679
hybrid contribution 1.632 -0.693 0.200 1.784
sum -6.151 18.999 -4.450 20.460
Atomic orbital electron populations
1.21829 0.93231 1.02476 1.01641 1.21318 0.96086 0.95720 0.93238
1.21546 1.01283 0.94187 1.01055 1.23264 1.00030 0.88805 0.96844
1.65386 1.41514 1.14135 1.01931 1.22426 0.93098 0.95822 0.96890
1.21593 1.00868 0.92319 0.99985 1.21606 0.96693 0.98663 0.97825
1.19087 0.96994 0.88908 0.96578 1.21295 1.23881 0.93566 1.17085
0.92784 1.25036 0.96233 0.97774 0.95501 1.69970 1.42169 1.08904
1.32539 0.86608 0.81426 0.79429 0.80624 1.20671 1.21245 1.19920
1.23881 0.97697 0.98871 0.92380 1.22634 0.91821 0.89123 0.91885
0.91458 1.86542 1.67689 1.41337 1.41071 0.92313 0.92723 0.91662
0.92328 0.92273 0.93191 0.89900 0.93656 0.90933 0.94782 0.92811
0.91694 0.93464 0.93745 0.96606 0.96764 0.93059 0.92854 0.89670
0.77646
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.21 8.23 37.16 0.31 -0.91 16
2 C -0.06 -0.65 1.03 -153.13 -0.16 -0.80 16
3 C -0.12 -1.20 7.48 37.16 0.28 -0.92 16
4 C 0.04 0.44 5.55 -2.19 -0.01 0.43 16
5 N -0.51 -6.75 5.34 -229.97 -1.23 -7.98 16
6 C 0.05 0.67 4.83 -3.82 -0.02 0.65 16
7 C -0.11 -1.94 5.33 -26.73 -0.14 -2.08 16
8 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16
9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16
10 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16
11 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16
12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
13 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16
14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16
15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
18 C 0.00 0.00 5.66 -2.18 -0.01 -0.01 16
19 C 0.10 1.09 4.04 -25.35 -0.10 0.99 16
20 H 0.07 0.66 7.71 -51.93 -0.40 0.26 16
21 O -0.56 -5.51 11.55 -35.23 -0.41 -5.91 16
22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
24 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16
25 H 0.06 0.63 7.78 -51.93 -0.40 0.23 16
26 H 0.06 0.57 8.00 -51.93 -0.42 0.16 16
27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
28 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16
29 H 0.05 0.53 7.71 -51.93 -0.40 0.13 16
30 H 0.07 1.04 8.08 -51.93 -0.42 0.63 16
31 H 0.03 0.50 7.77 -51.93 -0.40 0.10 16
32 H 0.05 0.95 7.47 -51.93 -0.39 0.57 16
33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16
36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
39 H 0.05 0.68 7.69 -51.93 -0.40 0.28 16
40 H 0.08 1.04 7.85 -51.93 -0.41 0.63 16
41 H 0.38 2.29 9.12 45.56 0.42 2.71 16
LS Contribution 324.25 15.07 4.89 4.89
Total: -1.00 -31.41 324.25 -8.56 -39.97
By element:
Atomic # 1 Polarization: 4.31 SS G_CDS: -6.98 Total: -2.67 kcal
Atomic # 6 Polarization: -18.01 SS G_CDS: -0.55 Total: -18.55 kcal
Atomic # 7 Polarization: -34.21 SS G_CDS: -0.49 Total: -34.70 kcal
Atomic # 8 Polarization: -5.51 SS G_CDS: -0.41 Total: -5.91 kcal
Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal
Total LS contribution 4.89 Total: 4.89 kcal
Total: -31.41 -8.56 -39.97 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000387847662.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.758 kcal
(2) G-P(sol) polarization free energy of solvation -31.413 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.171 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds