Wall clock time and date at job start Mon Mar 30 2020 03:25:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 110.36841 * 2 1
4 4 C 1.54375 * 110.32919 * 122.18232 * 2 1 3
5 5 N 1.48553 * 104.59703 * 95.04092 * 4 2 1
6 6 C 1.46909 * 111.00067 * 159.04190 * 5 4 2
7 7 C 1.53000 * 109.46991 * 170.00168 * 6 5 4
8 8 C 1.53001 * 109.46886 * 179.97438 * 7 6 5
9 9 C 1.53000 * 109.46886 * 180.02562 * 8 7 6
10 10 C 1.50703 * 109.46912 * 180.02562 * 9 8 7
11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 8
12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8
13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9
14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9
15 15 H 1.48498 * 109.47171 * 89.99544 * 14 12 10
16 16 H 1.48500 * 109.46632 * 209.99795 * 14 12 10
17 17 H 1.48494 * 109.47053 * 329.99231 * 14 12 10
18 18 C 1.48562 * 104.21980 * 39.48997 * 5 4 2
19 19 C 1.54266 * 110.32625 * 237.82199 * 2 1 3
20 20 H 1.08994 * 110.32217 * 359.97438 * 19 2 1
21 21 O 1.42903 * 110.32571 * 122.10092 * 19 2 1
22 22 H 1.08992 * 109.47287 * 299.27244 * 1 2 3
23 23 H 1.09001 * 109.47362 * 59.27727 * 1 2 3
24 24 H 1.09008 * 109.46852 * 179.27340 * 1 2 3
25 25 H 1.08993 * 109.47471 * 180.72742 * 3 2 1
26 26 H 1.09003 * 109.47089 * 300.73063 * 3 2 1
27 27 H 1.08998 * 109.46962 * 60.72604 * 3 2 1
28 28 H 1.09007 * 110.40590 * 336.26461 * 4 2 1
29 29 H 1.08995 * 110.41282 * 213.82787 * 4 2 1
30 30 H 1.08992 * 109.46677 * 50.00550 * 6 5 4
31 31 H 1.09001 * 109.46574 * 290.00317 * 6 5 4
32 32 H 1.09001 * 109.46741 * 60.00192 * 7 6 5
33 33 H 1.09002 * 109.47398 * 300.00295 * 7 6 5
34 34 H 1.09001 * 109.46652 * 60.00345 * 8 7 6
35 35 H 1.08992 * 109.47514 * 300.00434 * 8 7 6
36 36 H 1.09002 * 109.47398 * 300.00496 * 9 8 7
37 37 H 1.09001 * 109.47194 * 60.00677 * 9 8 7
38 38 H 0.97000 * 120.00333 * 179.97438 * 13 12 10
39 39 H 1.08994 * 110.41298 * 79.29278 * 18 5 4
40 40 H 1.09006 * 110.41380 * 201.73510 * 18 5 4
41 41 H 0.96694 * 113.99463 * 179.97438 * 21 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0625 1.4344 0.0000
4 6 2.0663 -0.7710 1.2252
5 7 2.3148 -2.1466 0.7224
6 6 3.2651 -2.8594 1.5868
7 6 3.3066 -4.3364 1.1899
8 6 4.2968 -5.0786 2.0897
9 6 4.3387 -6.5555 1.6925
10 6 5.3136 -7.2867 2.5791
11 1 5.8492 -6.7516 3.3492
12 6 5.5216 -8.6388 2.4072
13 7 4.8689 -9.2906 1.4697
14 14 6.7294 -9.5452 3.5068
15 1 6.0185 -10.0593 4.7049
16 1 7.3235 -10.6818 2.7580
17 1 7.8065 -8.6152 3.9312
18 6 2.8807 -1.9421 -0.6358
19 6 2.0658 -0.7704 -1.2244
20 1 1.2389 -1.1489 -1.8251
21 8 2.9060 0.0743 -2.0135
22 1 -0.3633 0.5024 0.8964
23 1 -0.3634 0.5250 -0.8834
24 1 -0.3633 -1.0277 -0.0130
25 1 3.1522 1.4174 -0.0130
26 1 1.6966 1.9578 -0.8834
27 1 1.7179 1.9499 0.8964
28 1 1.3213 -0.7858 2.0208
29 1 2.9941 -0.3226 1.5803
30 1 2.9478 -2.7711 2.6258
31 1 4.2578 -2.4241 1.4717
32 1 3.6238 -4.4246 0.1509
33 1 2.3138 -4.7716 1.3049
34 1 3.9799 -4.9904 3.1289
35 1 5.2893 -4.6434 1.9743
36 1 3.3462 -6.9911 1.8075
37 1 4.6559 -6.6434 0.6533
38 1 5.0155 -10.2417 1.3485
39 1 3.9360 -1.6769 -0.5720
40 1 2.7491 -2.8387 -1.2416
41 1 3.2724 -0.3573 -2.7975
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000387847662.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:31
Heat of formation + Delta-G solvation = -96.483478 kcal
Electronic energy + Delta-G solvation = -17549.258373 eV
Core-core repulsion = 14847.967709 eV
Total energy + Delta-G solvation = -2701.290663 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.86027 -37.49913 -36.30008 -35.18148 -33.78904 -30.67920 -29.28354 -28.12517
-27.06738 -25.26448 -23.61010 -22.05789 -21.68502 -19.91268 -18.44180 -18.28547
-16.85694 -16.52723 -16.48451 -15.67251 -15.41600 -15.27677 -14.81865 -14.47667
-14.26549 -13.71433 -13.63520 -13.46287 -13.25003 -12.99207 -12.87411 -12.77800
-12.55430 -12.36026 -12.21467 -12.01349 -11.86038 -11.73128 -11.41110 -11.32667
-11.23139 -10.96397 -10.87293 -10.56099 -9.52101 -8.20490 -6.32188 1.39163
1.41010 1.52126 2.40416 2.84911 3.12123 3.39922 3.48012 3.66258
3.94616 4.07768 4.20055 4.23332 4.33088 4.43888 4.51381 4.54720
4.65486 4.75108 4.78603 4.80659 4.86461 4.88019 4.94450 5.04338
5.11842 5.16824 5.23855 5.25641 5.33373 5.35200 5.48364 5.53786
5.75323 5.84460 5.86779 6.00105 6.25006 6.85162 6.85586 7.37177
8.91441
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.053482 B = 0.003557 C = 0.003510
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 523.414016 B = 7870.440934 C = 7975.965275
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.065 4.065
3 C -0.117 4.117
4 C 0.038 3.962
5 N -0.516 5.516
6 C 0.056 3.944
7 C -0.098 4.098
8 C -0.097 4.097
9 C 0.023 3.977
10 C -0.546 4.546
11 H 0.060 0.940
12 C -0.003 4.003
13 N -0.934 5.934
14 Si 0.967 3.033
15 H -0.271 1.271
16 H -0.281 1.281
17 H -0.263 1.263
18 C -0.001 4.001
19 C 0.110 3.890
20 H 0.074 0.926
21 O -0.569 6.569
22 H 0.068 0.932
23 H 0.062 0.938
24 H 0.056 0.944
25 H 0.045 0.955
26 H 0.059 0.941
27 H 0.061 0.939
28 H 0.090 0.910
29 H 0.043 0.957
30 H 0.079 0.921
31 H 0.035 0.965
32 H 0.048 0.952
33 H 0.055 0.945
34 H 0.052 0.948
35 H 0.048 0.952
36 H -0.010 1.010
37 H -0.011 1.011
38 H 0.264 0.736
39 H 0.046 0.954
40 H 0.079 0.921
41 H 0.392 0.608
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.937 20.901 -4.336 22.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.065 4.065
3 C -0.174 4.174
4 C -0.089 4.089
5 N -0.240 5.240
6 C -0.072 4.072
7 C -0.136 4.136
8 C -0.135 4.135
9 C -0.014 4.014
10 C -0.584 4.584
11 H 0.078 0.922
12 C -0.200 4.200
13 N -0.575 5.575
14 Si 0.791 3.209
15 H -0.197 1.197
16 H -0.206 1.206
17 H -0.187 1.187
18 C -0.129 4.129
19 C 0.050 3.950
20 H 0.092 0.908
21 O -0.377 6.377
22 H 0.087 0.913
23 H 0.081 0.919
24 H 0.075 0.925
25 H 0.064 0.936
26 H 0.078 0.922
27 H 0.080 0.920
28 H 0.108 0.892
29 H 0.062 0.938
30 H 0.098 0.902
31 H 0.054 0.946
32 H 0.067 0.933
33 H 0.074 0.926
34 H 0.071 0.929
35 H 0.067 0.933
36 H 0.008 0.992
37 H 0.007 0.993
38 H 0.072 0.928
39 H 0.064 0.936
40 H 0.098 0.902
41 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges -7.593 20.852 -3.958 22.541
hybrid contribution 1.558 -1.051 -0.074 1.881
sum -6.035 19.801 -4.032 21.089
Atomic orbital electron populations
1.21795 0.92166 1.02193 1.02611 1.21370 0.96924 0.95770 0.92448
1.21483 1.00361 0.93887 1.01704 1.23327 1.00236 0.87698 0.97656
1.65326 1.40984 1.15423 1.02271 1.22212 0.93754 0.93769 0.97503
1.21401 0.99161 0.94145 0.98906 1.21410 0.98035 0.95361 0.98720
1.19014 0.94987 0.92412 0.94950 1.21742 1.24538 0.94419 1.17655
0.92201 1.26028 0.98193 0.98807 0.97003 1.70105 1.43713 1.09415
1.34230 0.85421 0.78927 0.78014 0.78534 1.19664 1.20649 1.18706
1.23909 0.97602 0.99527 0.91904 1.22571 0.91701 0.88519 0.92177
0.90768 1.86512 1.67706 1.41570 1.41872 0.91268 0.91890 0.92527
0.93614 0.92195 0.91969 0.89152 0.93838 0.90247 0.94630 0.93304
0.92572 0.92904 0.93325 0.99194 0.99304 0.92750 0.93564 0.90214
0.75860
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.08 8.23 71.98 0.59 -1.48 16
2 C -0.06 -1.20 1.03 -51.29 -0.05 -1.26 16
3 C -0.12 -2.04 7.48 71.98 0.54 -1.51 16
4 C 0.04 0.82 5.55 86.45 0.48 1.30 16
5 N -0.52 -13.24 5.34 -881.50 -4.71 -17.94 16
6 C 0.06 1.60 4.83 86.30 0.42 2.01 16
7 C -0.10 -3.47 5.33 30.59 0.16 -3.30 16
8 C -0.10 -4.11 5.15 30.59 0.16 -3.95 16
9 C 0.02 1.29 4.97 29.85 0.15 1.43 16
10 C -0.55 -31.98 9.11 25.60 0.23 -31.74 16
11 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16
12 C 0.00 -0.16 5.46 84.65 0.46 0.30 16
13 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16
14 Si 0.97 44.95 29.54 68.60 2.03 46.98 16
15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
17 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16
18 C 0.00 -0.02 5.66 86.45 0.49 0.47 16
19 C 0.11 2.13 4.04 31.49 0.13 2.26 16
20 H 0.07 1.35 7.71 -2.39 -0.02 1.33 16
21 O -0.57 -10.29 11.55 -148.98 -1.72 -12.01 16
22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
24 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16
25 H 0.04 0.92 7.78 -2.39 -0.02 0.90 16
26 H 0.06 1.04 8.00 -2.39 -0.02 1.02 16
27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
28 H 0.09 1.78 7.86 -2.38 -0.02 1.76 16
29 H 0.04 0.95 7.71 -2.39 -0.02 0.93 16
30 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16
31 H 0.04 1.01 7.77 -2.39 -0.02 0.99 16
32 H 0.05 1.75 7.47 -2.39 -0.02 1.74 16
33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16
34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16
35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16
38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16
39 H 0.05 1.15 7.69 -2.39 -0.02 1.13 16
40 H 0.08 1.92 7.85 -2.38 -0.02 1.90 16
41 H 0.39 4.20 9.12 -74.06 -0.68 3.53 16
Total: -1.00 -66.79 324.25 -0.07 -66.86
By element:
Atomic # 1 Polarization: 9.12 SS G_CDS: 0.29 Total: 9.41 kcal
Atomic # 6 Polarization: -39.22 SS G_CDS: 3.76 Total: -35.47 kcal
Atomic # 7 Polarization: -71.35 SS G_CDS: -4.42 Total: -75.77 kcal
Atomic # 8 Polarization: -10.29 SS G_CDS: -1.72 Total: -12.01 kcal
Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal
Total: -66.79 -0.07 -66.86 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000387847662.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.624 kcal
(2) G-P(sol) polarization free energy of solvation -66.792 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.416 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.483 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds