Wall clock time and date at job start Mon Mar 30 2020 03:51:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47574 * 2 1
4 4 C 1.53002 * 109.47041 * 120.00227 * 2 1 3
5 5 C 1.53003 * 109.47235 * 174.99617 * 4 2 1
6 6 H 1.09002 * 109.46761 * 54.38057 * 5 4 2
7 7 C 1.50696 * 109.46970 * 174.37699 * 5 4 2
8 8 H 1.08000 * 120.00001 * 234.55474 * 7 5 4
9 9 C 1.37883 * 119.99824 * 54.56799 * 7 5 4
10 10 N 1.31516 * 119.99986 * 8.47323 * 9 7 5
11 11 Si 1.86798 * 119.99863 * 188.48191 * 9 7 5
12 12 H 1.48496 * 109.47337 * 179.97438 * 11 9 7
13 13 H 1.48501 * 109.46844 * 299.99202 * 11 9 7
14 14 H 1.48500 * 109.47281 * 59.99201 * 11 9 7
15 15 N 1.46898 * 109.46884 * 294.38363 * 5 4 2
16 16 C 1.46900 * 110.99944 * 155.00378 * 15 5 4
17 17 C 1.52997 * 109.47492 * 179.97438 * 16 15 5
18 18 O 1.42900 * 112.85011 * 53.79605 * 17 16 15
19 19 C 1.53780 * 113.61355 * 282.49304 * 17 16 15
20 20 C 1.53775 * 87.08137 * 220.01552 * 19 17 16
21 21 C 1.53776 * 113.61944 * 184.99421 * 17 16 15
22 22 H 1.08997 * 109.46661 * 300.00137 * 1 2 3
23 23 H 1.09004 * 109.46948 * 59.99705 * 1 2 3
24 24 H 1.08995 * 109.47029 * 179.97438 * 1 2 3
25 25 H 1.09005 * 109.46989 * 239.99841 * 2 1 3
26 26 H 1.09001 * 109.46621 * 59.99826 * 3 2 1
27 27 H 1.08998 * 109.47192 * 179.97438 * 3 2 1
28 28 H 1.09003 * 109.46706 * 300.00119 * 3 2 1
29 29 H 1.09000 * 109.47325 * 54.99753 * 4 2 1
30 30 H 1.08995 * 109.47080 * 294.99864 * 4 2 1
31 31 H 0.96997 * 119.99772 * 1.46672 * 10 9 7
32 32 H 1.00904 * 111.00021 * 278.94870 * 15 5 4
33 33 H 1.09003 * 109.46839 * 299.99040 * 16 15 5
34 34 H 1.08993 * 109.47365 * 59.98944 * 16 15 5
35 35 H 0.96708 * 114.00500 * 309.67202 * 18 17 16
36 36 H 1.09002 * 113.61234 * 334.56845 * 19 17 16
37 37 H 1.08999 * 113.61494 * 105.46707 * 19 17 16
38 38 H 1.09001 * 113.61624 * 270.88322 * 20 19 17
39 39 H 1.09000 * 113.61091 * 139.98248 * 20 19 17
40 40 H 1.08999 * 113.61901 * 254.52953 * 21 17 16
41 41 H 1.09008 * 113.61326 * 25.43057 * 21 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0402 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5649 -0.8312 1.1880
6 1 3.9949 0.1597 1.0417
7 6 4.0785 -1.4163 2.4782
8 1 4.8329 -0.8922 3.0463
9 6 3.5857 -2.6209 2.9334
10 7 2.7948 -3.3397 2.1668
11 14 4.0410 -3.2318 4.6389
12 1 3.3863 -4.5414 4.8868
13 1 5.5147 -3.3895 4.7310
14 1 3.5837 -2.2500 5.6548
15 7 3.9484 -1.7016 0.0685
16 6 5.3041 -1.3874 -0.4021
17 6 5.6675 -2.3126 -1.5652
18 8 4.7017 -2.2860 -2.6181
19 6 6.0609 -3.7321 -1.1234
20 6 7.1577 -3.6783 -2.1999
21 6 7.1162 -2.1481 -2.0539
22 1 -0.3632 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 1.8934 -0.5139 -0.8900
26 1 1.6768 1.9562 0.8900
27 1 3.1301 1.4424 0.0005
28 1 1.6768 1.9563 -0.8900
29 1 1.6054 -1.7199 1.2952
30 1 1.7517 -0.1584 2.1369
31 1 2.5754 -3.0326 1.2732
32 1 3.8709 -2.6747 0.3239
33 1 5.3413 -0.3508 -0.7368
34 1 6.0140 -1.5320 0.4123
35 1 3.7906 -2.4124 -2.3195
36 1 6.4494 -3.7808 -0.1061
37 1 5.2922 -4.4794 -1.3202
38 1 6.8286 -4.0328 -3.1767
39 1 8.1019 -4.1217 -1.8836
40 1 7.1996 -1.6166 -3.0018
41 1 7.7934 -1.7637 -1.2910
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000389936238.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:44
Heat of formation + Delta-G solvation = -45.406456 kcal
Electronic energy + Delta-G solvation = -18796.298508 eV
Core-core repulsion = 16097.222711 eV
Total energy + Delta-G solvation = -2699.075797 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.28160 -37.05422 -34.19678 -34.00754 -31.87550 -28.47837 -26.57586 -25.74997
-25.13993 -24.95810 -21.78769 -20.63125 -19.23534 -18.80948 -17.45237 -15.98306
-14.97671 -14.95347 -14.52940 -13.98824 -13.80326 -13.51698 -13.31191 -13.08142
-12.72067 -12.17685 -11.91693 -11.72645 -11.58239 -11.30216 -11.07509 -11.04547
-10.88730 -10.77871 -10.70261 -10.55137 -10.17102 -9.98371 -9.85204 -9.61133
-9.45509 -9.05689 -8.89985 -8.48194 -7.07170 -6.33533 -4.20161 3.36344
3.39216 3.57314 4.45160 4.49937 4.86761 4.93187 5.14864 5.22408
5.42446 5.60143 5.66450 5.69769 5.76651 5.93796 5.97791 6.04402
6.11774 6.12693 6.22610 6.33893 6.36949 6.42476 6.45461 6.53714
6.62692 6.68152 6.71111 6.74360 6.80227 6.92636 7.27599 7.39754
7.55687 7.98669 8.11422 8.21871 8.46669 8.71282 8.78511 9.52485
10.91672
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.014810 B = 0.010369 C = 0.006860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1890.168831 B = 2699.640851 C = 4080.360489
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.094 4.094
3 C -0.139 4.139
4 C -0.100 4.100
5 C 0.195 3.805
6 H 0.033 0.967
7 C -0.631 4.631
8 H 0.043 0.957
9 C 0.034 3.966
10 N -0.909 5.909
11 Si 1.058 2.942
12 H -0.282 1.282
13 H -0.290 1.290
14 H -0.288 1.288
15 N -0.697 5.697
16 C 0.052 3.948
17 C 0.116 3.884
18 O -0.548 6.548
19 C -0.165 4.165
20 C -0.135 4.135
21 C -0.128 4.128
22 H 0.044 0.956
23 H 0.041 0.959
24 H 0.049 0.951
25 H 0.074 0.926
26 H 0.043 0.957
27 H 0.053 0.947
28 H 0.038 0.962
29 H 0.072 0.928
30 H 0.043 0.957
31 H 0.282 0.718
32 H 0.344 0.656
33 H 0.058 0.942
34 H 0.036 0.964
35 H 0.386 0.614
36 H 0.086 0.914
37 H 0.069 0.931
38 H 0.079 0.921
39 H 0.062 0.938
40 H 0.070 0.930
41 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.782 2.162 -6.035 6.988
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.112 4.112
3 C -0.197 4.197
4 C -0.139 4.139
5 C 0.088 3.912
6 H 0.051 0.949
7 C -0.670 4.670
8 H 0.062 0.938
9 C -0.172 4.172
10 N -0.550 5.550
11 Si 0.887 3.113
12 H -0.207 1.207
13 H -0.217 1.217
14 H -0.215 1.215
15 N -0.332 5.332
16 C -0.078 4.078
17 C 0.075 3.925
18 O -0.355 6.355
19 C -0.203 4.203
20 C -0.172 4.172
21 C -0.166 4.166
22 H 0.064 0.936
23 H 0.060 0.940
24 H 0.069 0.931
25 H 0.093 0.907
26 H 0.062 0.938
27 H 0.072 0.928
28 H 0.057 0.943
29 H 0.090 0.910
30 H 0.062 0.938
31 H 0.098 0.902
32 H 0.165 0.835
33 H 0.076 0.924
34 H 0.054 0.946
35 H 0.236 0.764
36 H 0.104 0.896
37 H 0.088 0.912
38 H 0.097 0.903
39 H 0.080 0.920
40 H 0.089 0.911
41 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 2.737 1.416 -5.809 6.576
hybrid contribution 0.347 0.872 0.228 0.965
sum 3.084 2.288 -5.581 6.774
Atomic orbital electron populations
1.21845 0.97141 1.00954 1.00136 1.21116 0.93636 0.95542 1.00938
1.21813 1.01128 0.96931 0.99780 1.21717 0.97651 1.00272 0.94250
1.19274 0.91968 0.92393 0.87608 0.94868 1.22509 1.26261 1.08973
1.09307 0.93841 1.25666 0.93912 0.93444 1.04162 1.70905 1.34339
1.38804 1.10909 0.83701 0.75922 0.76377 0.75308 1.20705 1.21658
1.21455 1.61050 1.21735 1.10619 1.39748 1.22203 0.92828 0.97984
0.94812 1.22166 0.88749 0.94134 0.87500 1.86255 1.19900 1.95463
1.33856 1.23579 0.99014 0.98541 0.99147 1.22740 0.98783 0.96189
0.99504 1.22991 0.95058 0.96866 1.01687 0.93638 0.94037 0.93142
0.90720 0.93800 0.92788 0.94303 0.90955 0.93834 0.90193 0.83489
0.92400 0.94578 0.76414 0.89564 0.91235 0.90279 0.91958 0.91148
0.89305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.36 9.19 37.16 0.34 -2.02 16
2 C -0.09 -1.75 2.87 -90.62 -0.26 -2.01 16
3 C -0.14 -2.39 8.96 37.16 0.33 -2.06 16
4 C -0.10 -2.24 3.89 -26.73 -0.10 -2.34 16
5 C 0.19 4.59 2.07 -68.87 -0.14 4.45 16
6 H 0.03 0.79 5.98 -51.93 -0.31 0.48 16
7 C -0.63 -16.80 8.62 -34.44 -0.30 -17.09 16
8 H 0.04 1.19 7.83 -52.49 -0.41 0.78 16
9 C 0.03 0.91 5.03 -17.82 -0.09 0.82 16
10 N -0.91 -24.99 12.33 55.43 0.68 -24.31 16
11 Si 1.06 24.26 29.91 -169.99 -5.08 19.17 16
12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
13 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16
14 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16
15 N -0.70 -14.93 4.72 -107.96 -0.51 -15.44 16
16 C 0.05 1.03 5.07 -3.83 -0.02 1.01 16
17 C 0.12 2.00 1.49 -89.81 -0.13 1.86 16
18 O -0.55 -9.65 13.41 -35.23 -0.47 -10.12 16
19 C -0.16 -2.74 7.27 -25.92 -0.19 -2.93 16
20 C -0.13 -1.91 8.02 -25.92 -0.21 -2.12 16
21 C -0.13 -1.90 7.47 -25.92 -0.19 -2.09 16
22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16
25 H 0.07 1.44 7.64 -51.93 -0.40 1.04 16
26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
27 H 0.05 0.98 6.45 -51.93 -0.33 0.64 16
28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16
29 H 0.07 1.78 5.40 -51.93 -0.28 1.50 16
30 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16
31 H 0.28 7.51 3.86 -40.82 -0.16 7.35 16
32 H 0.34 8.07 5.68 -39.29 -0.22 7.85 16
33 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16
34 H 0.04 0.77 7.91 -51.93 -0.41 0.36 16
35 H 0.39 6.48 8.38 45.56 0.38 6.86 16
36 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16
37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
41 H 0.09 1.23 8.10 -51.92 -0.42 0.81 16
LS Contribution 316.36 15.07 4.77 4.77
Total: -1.00 -26.84 316.36 -8.00 -34.84
By element:
Atomic # 1 Polarization: 22.05 SS G_CDS: -6.42 Total: 15.62 kcal
Atomic # 6 Polarization: -23.57 SS G_CDS: -0.96 Total: -24.53 kcal
Atomic # 7 Polarization: -39.92 SS G_CDS: 0.17 Total: -39.75 kcal
Atomic # 8 Polarization: -9.65 SS G_CDS: -0.47 Total: -10.12 kcal
Atomic # 14 Polarization: 24.26 SS G_CDS: -5.08 Total: 19.17 kcal
Total LS contribution 4.77 Total: 4.77 kcal
Total: -26.84 -8.00 -34.84 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389936238.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.571 kcal
(2) G-P(sol) polarization free energy of solvation -26.835 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.407 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.835 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.406 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds