Wall clock time and date at job start Mon Mar 30 2020 03:51:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47574 * 2 1
4 4 C 1.53002 * 109.47041 * 120.00227 * 2 1 3
5 5 C 1.53003 * 109.47235 * 174.99617 * 4 2 1
6 6 H 1.09002 * 109.46761 * 54.38057 * 5 4 2
7 7 C 1.50696 * 109.46970 * 174.37699 * 5 4 2
8 8 H 1.08000 * 120.00001 * 234.55474 * 7 5 4
9 9 C 1.37883 * 119.99824 * 54.56799 * 7 5 4
10 10 N 1.31516 * 119.99986 * 8.47323 * 9 7 5
11 11 Si 1.86798 * 119.99863 * 188.48191 * 9 7 5
12 12 H 1.48496 * 109.47337 * 179.97438 * 11 9 7
13 13 H 1.48501 * 109.46844 * 299.99202 * 11 9 7
14 14 H 1.48500 * 109.47281 * 59.99201 * 11 9 7
15 15 N 1.46898 * 109.46884 * 294.38363 * 5 4 2
16 16 C 1.46900 * 110.99944 * 155.00378 * 15 5 4
17 17 C 1.52997 * 109.47492 * 179.97438 * 16 15 5
18 18 O 1.42900 * 112.85011 * 53.79605 * 17 16 15
19 19 C 1.53780 * 113.61355 * 282.49304 * 17 16 15
20 20 C 1.53775 * 87.08137 * 220.01552 * 19 17 16
21 21 C 1.53776 * 113.61944 * 184.99421 * 17 16 15
22 22 H 1.08997 * 109.46661 * 300.00137 * 1 2 3
23 23 H 1.09004 * 109.46948 * 59.99705 * 1 2 3
24 24 H 1.08995 * 109.47029 * 179.97438 * 1 2 3
25 25 H 1.09005 * 109.46989 * 239.99841 * 2 1 3
26 26 H 1.09001 * 109.46621 * 59.99826 * 3 2 1
27 27 H 1.08998 * 109.47192 * 179.97438 * 3 2 1
28 28 H 1.09003 * 109.46706 * 300.00119 * 3 2 1
29 29 H 1.09000 * 109.47325 * 54.99753 * 4 2 1
30 30 H 1.08995 * 109.47080 * 294.99864 * 4 2 1
31 31 H 0.96997 * 119.99772 * 1.46672 * 10 9 7
32 32 H 1.00904 * 111.00021 * 278.94870 * 15 5 4
33 33 H 1.09003 * 109.46839 * 299.99040 * 16 15 5
34 34 H 1.08993 * 109.47365 * 59.98944 * 16 15 5
35 35 H 0.96708 * 114.00500 * 309.67202 * 18 17 16
36 36 H 1.09002 * 113.61234 * 334.56845 * 19 17 16
37 37 H 1.08999 * 113.61494 * 105.46707 * 19 17 16
38 38 H 1.09001 * 113.61624 * 270.88322 * 20 19 17
39 39 H 1.09000 * 113.61091 * 139.98248 * 20 19 17
40 40 H 1.08999 * 113.61901 * 254.52953 * 21 17 16
41 41 H 1.09008 * 113.61326 * 25.43057 * 21 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0402 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5649 -0.8312 1.1880
6 1 3.9949 0.1597 1.0417
7 6 4.0785 -1.4163 2.4782
8 1 4.8329 -0.8922 3.0463
9 6 3.5857 -2.6209 2.9334
10 7 2.7948 -3.3397 2.1668
11 14 4.0410 -3.2318 4.6389
12 1 3.3863 -4.5414 4.8868
13 1 5.5147 -3.3895 4.7310
14 1 3.5837 -2.2500 5.6548
15 7 3.9484 -1.7016 0.0685
16 6 5.3041 -1.3874 -0.4021
17 6 5.6675 -2.3126 -1.5652
18 8 4.7017 -2.2860 -2.6181
19 6 6.0609 -3.7321 -1.1234
20 6 7.1577 -3.6783 -2.1999
21 6 7.1162 -2.1481 -2.0539
22 1 -0.3632 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 1.8934 -0.5139 -0.8900
26 1 1.6768 1.9562 0.8900
27 1 3.1301 1.4424 0.0005
28 1 1.6768 1.9563 -0.8900
29 1 1.6054 -1.7199 1.2952
30 1 1.7517 -0.1584 2.1369
31 1 2.5754 -3.0326 1.2732
32 1 3.8709 -2.6747 0.3239
33 1 5.3413 -0.3508 -0.7368
34 1 6.0140 -1.5320 0.4123
35 1 3.7906 -2.4124 -2.3195
36 1 6.4494 -3.7808 -0.1061
37 1 5.2922 -4.4794 -1.3202
38 1 6.8286 -4.0328 -3.1767
39 1 8.1019 -4.1217 -1.8836
40 1 7.1996 -1.6166 -3.0018
41 1 7.7934 -1.7637 -1.2910
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000389936238.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:44
Heat of formation + Delta-G solvation = -61.729642 kcal
Electronic energy + Delta-G solvation = -18797.006335 eV
Core-core repulsion = 16097.222711 eV
Total energy + Delta-G solvation = -2699.783624 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.66862 -38.78677 -35.77014 -35.42681 -33.76424 -30.21743 -27.96086 -27.23079
-26.92340 -26.49138 -23.23349 -22.39806 -20.57403 -20.44440 -19.42401 -17.44763
-16.59771 -16.36353 -15.94473 -15.77547 -15.48529 -15.08932 -14.83920 -14.59257
-14.28648 -13.59907 -13.56297 -13.20506 -13.10348 -12.85742 -12.78270 -12.66139
-12.56251 -12.29046 -12.03831 -11.99071 -11.79325 -11.65955 -11.34192 -11.28560
-11.01102 -10.83261 -10.51897 -10.41348 -8.93999 -8.43421 -6.33367 1.50384
1.54640 1.75326 2.53823 3.09038 3.18251 3.51316 3.64140 3.88124
4.02793 4.08039 4.17074 4.22559 4.28908 4.54453 4.70304 4.73031
4.76625 4.79989 4.82508 4.86834 4.89540 5.00128 5.00788 5.01868
5.06963 5.17782 5.27230 5.32530 5.33902 5.43766 5.60377 5.66074
5.75596 5.96317 6.10708 6.54033 6.68215 6.77154 6.85402 7.45031
8.81160
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.014810 B = 0.010369 C = 0.006860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1890.168831 B = 2699.640851 C = 4080.360489
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.088 4.088
3 C -0.134 4.134
4 C -0.090 4.090
5 C 0.195 3.805
6 H 0.027 0.973
7 C -0.650 4.650
8 H 0.026 0.974
9 C -0.002 4.002
10 N -0.925 5.925
11 Si 1.097 2.903
12 H -0.282 1.282
13 H -0.279 1.279
14 H -0.279 1.279
15 N -0.684 5.684
16 C 0.056 3.944
17 C 0.111 3.889
18 O -0.550 6.550
19 C -0.171 4.171
20 C -0.120 4.120
21 C -0.122 4.122
22 H 0.047 0.953
23 H 0.067 0.933
24 H 0.043 0.957
25 H 0.069 0.931
26 H 0.046 0.954
27 H 0.038 0.962
28 H 0.064 0.936
29 H 0.048 0.952
30 H 0.026 0.974
31 H 0.280 0.720
32 H 0.333 0.667
33 H 0.057 0.943
34 H 0.017 0.983
35 H 0.388 0.612
36 H 0.072 0.928
37 H 0.061 0.939
38 H 0.085 0.915
39 H 0.083 0.917
40 H 0.080 0.920
41 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.107 2.417 -6.949 7.987
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.107 4.107
3 C -0.191 4.191
4 C -0.129 4.129
5 C 0.087 3.913
6 H 0.045 0.955
7 C -0.689 4.689
8 H 0.045 0.955
9 C -0.204 4.204
10 N -0.566 5.566
11 Si 0.921 3.079
12 H -0.207 1.207
13 H -0.205 1.205
14 H -0.205 1.205
15 N -0.317 5.317
16 C -0.074 4.074
17 C 0.069 3.931
18 O -0.357 6.357
19 C -0.209 4.209
20 C -0.157 4.157
21 C -0.160 4.160
22 H 0.066 0.934
23 H 0.086 0.914
24 H 0.062 0.938
25 H 0.087 0.913
26 H 0.065 0.935
27 H 0.057 0.943
28 H 0.083 0.917
29 H 0.066 0.934
30 H 0.044 0.956
31 H 0.096 0.904
32 H 0.153 0.847
33 H 0.076 0.924
34 H 0.035 0.965
35 H 0.237 0.763
36 H 0.091 0.909
37 H 0.080 0.920
38 H 0.104 0.896
39 H 0.102 0.898
40 H 0.098 0.902
41 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 3.067 1.689 -6.742 7.597
hybrid contribution 0.244 0.827 0.510 1.001
sum 3.311 2.516 -6.232 7.492
Atomic orbital electron populations
1.21785 0.95151 1.01061 1.01570 1.21026 0.95310 0.95963 0.98382
1.21749 1.00131 0.96010 1.01213 1.21554 0.96682 0.99105 0.95589
1.19227 0.92759 0.92120 0.87167 0.95484 1.22773 1.26228 1.09322
1.10608 0.95547 1.26694 0.93512 0.93667 1.06565 1.70956 1.35080
1.39290 1.11245 0.83173 0.76329 0.76049 0.72305 1.20715 1.20475
1.20484 1.61018 1.22957 1.09392 1.38333 1.22233 0.91239 0.98753
0.95221 1.22272 0.90058 0.93949 0.86798 1.86255 1.20131 1.95449
1.33853 1.23570 1.00003 0.97884 0.99409 1.22687 0.98651 0.95648
0.98701 1.23025 0.92951 0.97686 1.02307 0.93376 0.91394 0.93765
0.91306 0.93537 0.94270 0.91669 0.93375 0.95558 0.90430 0.84711
0.92423 0.96519 0.76258 0.90929 0.92007 0.89618 0.89834 0.90175
0.88363
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.33 9.19 71.98 0.66 -3.66 16
2 C -0.09 -3.22 2.87 -10.79 -0.03 -3.25 16
3 C -0.13 -4.39 8.96 71.98 0.64 -3.75 16
4 C -0.09 -4.11 3.89 30.60 0.12 -3.99 16
5 C 0.20 9.39 2.07 44.17 0.09 9.49 16
6 H 0.03 1.31 5.98 -2.39 -0.01 1.30 16
7 C -0.65 -35.38 8.62 25.60 0.22 -35.16 16
8 H 0.03 1.48 7.83 -2.91 -0.02 1.46 16
9 C 0.00 -0.11 5.03 84.66 0.43 0.32 16
10 N -0.93 -51.57 12.33 21.45 0.26 -51.31 16
11 Si 1.10 49.08 29.91 68.60 2.05 51.14 16
12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
13 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16
14 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
15 N -0.68 -29.82 4.72 -495.46 -2.34 -32.16 16
16 C 0.06 2.21 5.07 86.30 0.44 2.65 16
17 C 0.11 3.73 1.49 -10.27 -0.02 3.71 16
18 O -0.55 -18.77 13.41 -148.98 -2.00 -20.77 16
19 C -0.17 -5.57 7.27 31.12 0.23 -5.34 16
20 C -0.12 -3.11 8.02 31.12 0.25 -2.86 16
21 C -0.12 -3.36 7.47 31.12 0.23 -3.13 16
22 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
23 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16
24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
25 H 0.07 2.59 7.64 -2.38 -0.02 2.58 16
26 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16
27 H 0.04 1.38 6.45 -2.39 -0.02 1.37 16
28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
29 H 0.05 2.42 5.40 -2.39 -0.01 2.40 16
30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16
31 H 0.28 15.25 3.86 -92.71 -0.36 14.89 16
32 H 0.33 16.00 5.68 -89.69 -0.51 15.49 16
33 H 0.06 2.25 8.06 -2.39 -0.02 2.24 16
34 H 0.02 0.72 7.91 -2.39 -0.02 0.70 16
35 H 0.39 12.81 8.38 -74.05 -0.62 12.19 16
36 H 0.07 2.55 8.03 -2.39 -0.02 2.53 16
37 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16
39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
40 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
41 H 0.10 2.52 8.10 -2.38 -0.02 2.50 16
Total: -1.00 -57.15 316.36 1.52 -55.63
By element:
Atomic # 1 Polarization: 42.17 SS G_CDS: 0.28 Total: 42.45 kcal
Atomic # 6 Polarization: -48.24 SS G_CDS: 3.26 Total: -44.98 kcal
Atomic # 7 Polarization: -81.39 SS G_CDS: -2.07 Total: -83.46 kcal
Atomic # 8 Polarization: -18.77 SS G_CDS: -2.00 Total: -20.77 kcal
Atomic # 14 Polarization: 49.08 SS G_CDS: 2.05 Total: 51.14 kcal
Total: -57.15 1.52 -55.63 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389936238.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.102 kcal
(2) G-P(sol) polarization free energy of solvation -57.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.251 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.628 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds