Wall clock time and date at job start Mon Mar 30 2020 04:31:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52992 * 109.47206 * 2 1
4 4 C 1.52998 * 109.47206 * 179.97438 * 3 2 1
5 5 C 1.50699 * 109.47149 * 294.99896 * 4 3 2
6 6 N 1.27938 * 120.00074 * 321.82220 * 5 4 3
7 7 Si 1.86806 * 119.99891 * 141.82049 * 5 4 3
8 8 H 1.48492 * 109.47175 * 359.97438 * 7 5 4
9 9 H 1.48498 * 109.47059 * 120.00431 * 7 5 4
10 10 H 1.48505 * 109.46996 * 240.00142 * 7 5 4
11 11 C 1.53006 * 109.47447 * 174.99809 * 4 3 2
12 12 O 1.42896 * 109.57344 * 294.49919 * 11 4 3
13 13 C 1.53119 * 109.51848 * 54.65352 * 11 4 3
14 14 C 1.53038 * 109.27662 * 177.55926 * 13 11 4
15 15 N 1.46856 * 109.52403 * 300.82326 * 14 13 11
16 16 C 1.46926 * 111.21539 * 61.74148 * 15 14 13
17 17 C 1.53036 * 109.48299 * 298.28099 * 16 15 14
18 18 C 1.52997 * 109.50305 * 299.20379 * 17 16 15
19 19 C 1.53003 * 109.50510 * 179.12534 * 17 16 15
20 20 H 1.09009 * 109.47512 * 180.02562 * 1 2 3
21 21 H 1.08997 * 109.47291 * 300.00224 * 1 2 3
22 22 H 1.09004 * 109.47295 * 60.00083 * 1 2 3
23 23 H 1.09003 * 109.46880 * 239.99669 * 2 1 3
24 24 H 1.09000 * 109.47070 * 120.00366 * 2 1 3
25 25 H 1.09003 * 109.47472 * 60.00031 * 3 2 1
26 26 H 1.08998 * 109.47381 * 299.99613 * 3 2 1
27 27 H 1.09004 * 109.47440 * 55.00111 * 4 3 2
28 28 H 0.97004 * 120.00107 * 315.16252 * 6 5 4
29 29 H 0.96697 * 114.00359 * 59.83482 * 12 11 4
30 30 H 1.08998 * 109.50358 * 297.50246 * 13 11 4
31 31 H 1.09001 * 109.50258 * 57.58542 * 13 11 4
32 32 H 1.09002 * 109.46471 * 60.83923 * 14 13 11
33 33 H 1.08998 * 109.46354 * 180.80310 * 14 13 11
34 34 H 1.00899 * 110.99956 * 297.64294 * 15 14 13
35 35 H 1.09007 * 109.51174 * 178.25934 * 16 15 14
36 36 H 1.08998 * 109.45439 * 58.26874 * 16 15 14
37 37 H 1.08998 * 109.47248 * 294.82984 * 18 17 16
38 38 H 1.09000 * 109.47321 * 54.83147 * 18 17 16
39 39 H 1.09007 * 109.47186 * 174.82812 * 18 17 16
40 40 H 1.08998 * 109.47059 * 180.08170 * 19 17 16
41 41 H 1.08999 * 109.46759 * 300.08479 * 19 17 16
42 42 H 1.08999 * 109.46960 * 60.07929 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 3.5699 1.4424 0.0006
5 6 4.0717 0.8422 1.2886
6 7 3.4634 1.0854 2.3875
7 14 5.5821 -0.2571 1.2807
8 1 6.0971 -0.3807 -0.1065
9 1 6.6312 0.3368 2.1478
10 1 5.2181 -1.6020 1.7947
11 6 4.0801 2.8794 -0.1251
12 8 3.7139 3.4075 -1.4014
13 6 3.4630 3.7400 0.9809
14 6 4.0235 5.1610 0.8873
15 7 5.4846 5.1227 1.0298
16 6 6.1037 4.3406 -0.0490
17 6 5.6046 2.8955 0.0170
18 6 5.9988 2.2798 1.3610
19 6 6.2322 2.0858 -1.1194
20 1 -0.3634 -1.0277 0.0005
21 1 -0.3634 0.5138 0.8899
22 1 -0.3634 0.5138 -0.8900
23 1 1.8933 -0.5139 -0.8900
24 1 1.8933 -0.5139 0.8899
25 1 1.6767 1.9563 0.8900
26 1 1.6767 1.9563 -0.8900
27 1 3.9337 0.8528 -0.8410
28 1 3.1853 1.9906 2.5979
29 1 2.7602 3.4271 -1.5600
30 1 2.3802 3.7671 0.8594
31 1 3.7097 3.3143 1.9535
32 1 3.7641 5.5908 -0.0802
33 1 3.5969 5.7727 1.6822
34 1 5.7504 4.7640 1.9346
35 1 7.1876 4.3561 0.0659
36 1 5.8346 4.7742 -1.0122
37 1 7.0847 2.2099 1.4241
38 1 5.6274 2.9075 2.1711
39 1 5.5650 1.2833 1.4455
40 1 5.8752 1.0570 -1.0727
41 1 5.9510 2.5249 -2.0766
42 1 7.3174 2.0988 -1.0185
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000393759650.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:31:00
Heat of formation + Delta-G solvation = 36.842448 kcal
Electronic energy + Delta-G solvation = -20634.353953 eV
Core-core repulsion = 17925.188996 eV
Total energy + Delta-G solvation = -2709.164957 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 242.186 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-42.57846 -38.16456 -36.90069 -35.41147 -34.63442 -32.04867 -30.22202 -28.86690
-27.37145 -26.42821 -23.83672 -23.25419 -22.36951 -20.66597 -20.12559 -18.01348
-17.76380 -17.30069 -16.70446 -16.19450 -15.75895 -15.55145 -15.38065 -14.68889
-14.61222 -14.32700 -14.23890 -14.00883 -13.78088 -13.50438 -13.14023 -12.96476
-12.84727 -12.66064 -12.54119 -12.38465 -12.16656 -11.97659 -11.81199 -11.69379
-11.57070 -11.49532 -11.01082 -10.81449 -10.73163 -9.48067 -9.22335 0.54712
1.11443 1.44709 1.57383 1.86196 3.04531 3.23497 3.34666 3.46345
3.63375 3.69786 3.78889 3.92448 3.95567 4.06580 4.13971 4.17237
4.21971 4.38036 4.48299 4.52197 4.52923 4.55576 4.72271 4.73806
4.77449 4.78693 4.83485 4.87627 4.89286 4.98128 5.03924 5.08638
5.12961 5.14400 5.21392 5.25710 5.34399 5.43147 6.00260 6.40853
6.73156 7.03357
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.127 4.127
3 C -0.104 4.104
4 C -0.143 4.143
5 C 0.006 3.994
6 N -0.712 5.712
7 Si 1.080 2.920
8 H -0.215 1.215
9 H -0.260 1.260
10 H -0.286 1.286
11 C 0.161 3.839
12 O -0.556 6.556
13 C -0.191 4.191
14 C 0.064 3.936
15 N -0.692 5.692
16 C 0.076 3.924
17 C -0.087 4.087
18 C -0.168 4.168
19 C -0.155 4.155
20 H 0.054 0.946
21 H 0.045 0.955
22 H 0.061 0.939
23 H 0.071 0.929
24 H 0.052 0.948
25 H 0.057 0.943
26 H 0.081 0.919
27 H 0.104 0.896
28 H 0.341 0.659
29 H 0.384 0.616
30 H 0.081 0.919
31 H 0.071 0.929
32 H 0.072 0.928
33 H 0.078 0.922
34 H 0.343 0.657
35 H 0.083 0.917
36 H 0.072 0.928
37 H 0.094 0.906
38 H 0.073 0.927
39 H 0.044 0.956
40 H 0.066 0.934
41 H 0.064 0.936
42 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.439 -0.312 -1.656 1.741
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.165 4.165
3 C -0.142 4.142
4 C -0.165 4.165
5 C -0.230 4.230
6 N -0.335 5.335
7 Si 0.896 3.104
8 H -0.138 1.138
9 H -0.185 1.185
10 H -0.214 1.214
11 C 0.119 3.881
12 O -0.363 6.363
13 C -0.230 4.230
14 C -0.066 4.066
15 N -0.321 5.321
16 C -0.054 4.054
17 C -0.089 4.089
18 C -0.224 4.224
19 C -0.213 4.213
20 H 0.073 0.927
21 H 0.065 0.935
22 H 0.080 0.920
23 H 0.090 0.910
24 H 0.070 0.930
25 H 0.076 0.924
26 H 0.100 0.900
27 H 0.122 0.878
28 H 0.167 0.833
29 H 0.234 0.766
30 H 0.099 0.901
31 H 0.090 0.910
32 H 0.091 0.909
33 H 0.096 0.904
34 H 0.162 0.838
35 H 0.101 0.899
36 H 0.090 0.910
37 H 0.113 0.887
38 H 0.092 0.908
39 H 0.061 0.939
40 H 0.085 0.915
41 H 0.084 0.916
42 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 1.525 -0.641 -1.209 2.049
hybrid contribution -1.925 0.296 0.026 1.948
sum -0.400 -0.345 -1.183 1.295
Atomic orbital electron populations
1.21753 0.95589 1.01855 1.01703 1.21550 0.96119 0.96643 1.02176
1.21644 0.92486 0.97608 1.02461 1.22319 0.97134 0.97915 0.99127
1.31530 0.93601 1.04925 0.92956 1.68144 1.14922 1.20833 1.29604
0.83761 0.71760 0.72694 0.82159 1.13793 1.18502 1.21357 1.21002
0.93673 0.89908 0.83487 1.86532 1.29625 1.85701 1.34474 1.23186
1.02064 0.98313 0.99484 1.21930 0.87339 0.94528 1.02803 1.60634
1.08796 1.56270 1.06420 1.22025 0.99141 0.88766 0.95484 1.21192
0.93230 0.98581 0.95925 1.23293 1.03433 0.98234 0.97465 1.22103
1.01141 1.00093 0.97934 0.92702 0.93549 0.91970 0.91037 0.92954
0.92409 0.90005 0.87791 0.83309 0.76580 0.90073 0.91031 0.90925
0.90400 0.83821 0.89891 0.90976 0.88727 0.90785 0.93919 0.91480
0.91645 0.91189
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 0.12 9.91 71.98 0.71 0.83 16
2 C -0.13 0.10 5.75 30.59 0.18 0.28 16
3 C -0.10 0.32 3.68 30.59 0.11 0.43 16
4 C -0.14 0.40 1.26 -11.54 -0.01 0.39 16
5 C 0.01 0.00 1.57 88.68 0.14 0.14 16
6 N -0.71 -1.76 12.32 -4.05 -0.05 -1.81 16
7 Si 1.08 -0.67 24.01 68.60 1.65 0.98 16
8 H -0.22 0.91 5.52 99.48 0.55 1.46 16
9 H -0.26 0.23 5.96 99.48 0.59 0.82 16
10 H -0.29 -0.99 7.11 99.48 0.71 -0.29 16
11 C 0.16 -0.50 0.16 -10.71 0.00 -0.50 16
12 O -0.56 1.22 11.07 -148.98 -1.65 -0.43 16
13 C -0.19 0.64 3.63 30.65 0.11 0.75 16
14 C 0.06 -0.09 6.42 86.32 0.55 0.46 16
15 N -0.69 0.29 6.80 -513.79 -3.49 -3.20 16
16 C 0.08 -0.07 5.21 86.31 0.45 0.38 16
17 C -0.09 0.23 0.35 -52.13 -0.02 0.21 16
18 C -0.17 0.49 4.52 71.98 0.33 0.82 16
19 C -0.16 0.42 7.66 71.98 0.55 0.97 16
20 H 0.05 -0.02 8.14 -2.38 -0.02 -0.04 16
21 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16
22 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16
23 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16
24 H 0.05 0.14 7.30 -2.39 -0.02 0.12 16
25 H 0.06 -0.08 6.01 -2.39 -0.01 -0.10 16
26 H 0.08 -0.48 6.70 -2.39 -0.02 -0.50 16
27 H 0.10 -0.35 6.37 -2.38 -0.02 -0.37 16
28 H 0.34 0.28 5.59 -92.71 -0.52 -0.24 16
29 H 0.38 -2.71 7.46 -74.06 -0.55 -3.26 16
30 H 0.08 -0.34 6.62 -2.39 -0.02 -0.35 16
31 H 0.07 -0.19 3.73 -2.39 -0.01 -0.20 16
32 H 0.07 0.04 7.76 -2.39 -0.02 0.02 16
33 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16
34 H 0.34 -0.73 7.03 -89.69 -0.63 -1.36 16
35 H 0.08 -0.17 8.14 -2.38 -0.02 -0.19 16
36 H 0.07 0.17 7.76 -2.39 -0.02 0.15 16
37 H 0.09 -0.44 7.83 -2.39 -0.02 -0.46 16
38 H 0.07 -0.23 5.14 -2.39 -0.01 -0.24 16
39 H 0.04 -0.08 0.02 -55.15 0.00 -0.08 16
40 H 0.07 -0.22 3.61 -2.39 -0.01 -0.23 16
41 H 0.06 -0.04 7.63 -2.39 -0.02 -0.06 16
42 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16
Total: 0.00 -4.92 276.46 -0.62 -5.53
By element:
Atomic # 1 Polarization: -6.06 SS G_CDS: -0.17 Total: -6.23 kcal
Atomic # 6 Polarization: 2.06 SS G_CDS: 3.10 Total: 5.16 kcal
Atomic # 7 Polarization: -1.47 SS G_CDS: -3.54 Total: -5.01 kcal
Atomic # 8 Polarization: 1.22 SS G_CDS: -1.65 Total: -0.43 kcal
Atomic # 14 Polarization: -0.67 SS G_CDS: 1.65 Total: 0.98 kcal
Total: -4.92 -0.62 -5.53 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000393759650.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.376 kcal
(2) G-P(sol) polarization free energy of solvation -4.915 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.461 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.534 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds