Wall clock time and date at job start Mon Mar 30 2020 03:58:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52999 * 109.47587 * 2 1
4 4 C 1.52995 * 109.47380 * 59.99805 * 3 2 1
5 5 O 1.42901 * 109.46775 * 300.00009 * 3 2 1
6 6 C 1.53002 * 109.47379 * 180.02562 * 3 2 1
7 7 N 1.46894 * 109.47073 * 186.49005 * 6 3 2
8 8 C 1.46851 * 110.99835 * 162.26466 * 7 6 3
9 9 C 1.53038 * 109.51446 * 185.84253 * 8 7 6
10 10 C 1.53117 * 109.27903 * 300.80673 * 9 8 7
11 11 C 1.50699 * 109.52006 * 177.56937 * 10 9 8
12 12 H 1.07996 * 120.00221 * 240.32211 * 11 10 9
13 13 C 1.37886 * 120.00069 * 60.32924 * 11 10 9
14 14 N 1.31511 * 120.00060 * 359.97438 * 13 11 10
15 15 Si 1.86794 * 119.99967 * 179.97438 * 13 11 10
16 16 H 1.48501 * 109.47136 * 59.99370 * 15 13 11
17 17 H 1.48494 * 109.47238 * 179.97438 * 15 13 11
18 18 H 1.48504 * 109.47344 * 299.99829 * 15 13 11
19 19 C 1.53120 * 109.15494 * 57.66767 * 10 9 8
20 20 C 1.46842 * 111.00003 * 286.47019 * 7 6 3
21 21 H 1.08999 * 109.46752 * 59.99691 * 1 2 3
22 22 H 1.08996 * 109.47808 * 180.02562 * 1 2 3
23 23 H 1.09006 * 109.46835 * 300.00458 * 1 2 3
24 24 H 1.09006 * 109.46835 * 239.99542 * 2 1 3
25 25 H 1.09002 * 109.47134 * 119.99948 * 2 1 3
26 26 H 1.08999 * 109.47307 * 180.02562 * 4 3 2
27 27 H 1.08994 * 109.47282 * 300.00677 * 4 3 2
28 28 H 1.09002 * 109.46870 * 60.00340 * 4 3 2
29 29 H 0.96707 * 113.99973 * 299.99964 * 5 3 2
30 30 H 1.09003 * 109.47348 * 66.48723 * 6 3 2
31 31 H 1.09006 * 109.46667 * 306.49124 * 6 3 2
32 32 H 1.09000 * 109.46026 * 305.85302 * 8 7 6
33 33 H 1.09000 * 109.46576 * 65.83036 * 8 7 6
34 34 H 1.09002 * 109.50055 * 60.75297 * 9 8 7
35 35 H 1.09000 * 109.50253 * 180.86849 * 9 8 7
36 36 H 1.09002 * 109.52618 * 297.75910 * 10 9 8
37 37 H 0.97001 * 120.00301 * 180.02562 * 14 13 11
38 38 H 1.08996 * 109.49949 * 182.39790 * 19 10 9
39 39 H 1.08998 * 109.53111 * 62.29861 * 19 10 9
40 40 H 1.08998 * 109.46444 * 294.18116 * 20 7 6
41 41 H 1.09005 * 109.46509 * 54.15787 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 1.5301 2.1638 1.2492
5 8 1.5637 2.1161 -1.1668
6 6 3.5701 1.4424 -0.0006
7 7 4.0598 2.8184 0.1559
8 6 5.4666 2.8316 0.5771
9 6 5.8990 4.2700 0.8702
10 6 5.7165 5.1196 -0.3905
11 6 6.0843 6.5501 -0.0913
12 1 5.3488 7.3323 -0.2069
13 6 7.3601 6.8603 0.3300
14 7 8.2558 5.9078 0.4712
15 14 7.8162 8.6335 0.7002
16 1 6.9441 9.1530 1.7841
17 1 9.2352 8.6997 1.1326
18 1 7.6315 9.4575 -0.5214
19 6 4.2532 5.0499 -0.8359
20 6 3.8683 3.5889 -1.0794
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3633 0.5139 0.8900
24 1 1.8933 -0.5139 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 1.8932 3.1915 1.2489
27 1 0.4402 2.1638 1.2492
28 1 1.8935 1.6500 2.1392
29 1 1.8491 1.7124 -1.9980
30 1 3.9331 1.0325 -0.9432
31 1 3.9337 0.8311 0.8254
32 1 5.5819 2.2272 1.4769
33 1 6.0879 2.4205 -0.2186
34 1 5.2871 4.6771 1.6752
35 1 6.9475 4.2813 1.1680
36 1 6.3576 4.7361 -1.1842
37 1 9.1532 6.1259 0.7679
38 1 4.1258 5.6183 -1.7571
39 1 3.6152 5.4695 -0.0581
40 1 4.4970 3.1742 -1.8673
41 1 2.8228 3.5347 -1.3829
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397180845.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:58:26
Heat of formation + Delta-G solvation = -85.297563 kcal
Electronic energy + Delta-G solvation = -18588.367613 eV
Core-core repulsion = 15887.562007 eV
Total energy + Delta-G solvation = -2700.805606 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.49496 -38.57874 -35.49661 -34.17122 -33.09350 -31.39456 -30.25613 -28.24714
-26.63072 -24.27604 -23.68849 -22.66490 -20.96833 -20.30676 -18.43747 -17.36634
-16.76185 -16.46570 -16.29304 -15.87240 -15.42926 -14.85429 -14.62659 -14.27733
-14.21671 -13.91966 -13.31108 -13.15166 -12.95802 -12.84212 -12.80184 -12.74123
-12.58844 -12.27326 -12.17840 -11.96157 -11.84588 -11.75347 -11.43596 -11.25369
-11.08786 -10.65290 -10.44079 -10.15215 -9.06045 -8.07546 -6.21305 1.40797
1.42502 1.50116 2.43949 3.04301 3.18767 3.44999 3.92200 4.04375
4.10068 4.31174 4.35744 4.38377 4.47521 4.54492 4.67538 4.76943
4.84312 4.85148 4.88921 4.94725 5.02789 5.07974 5.14306 5.16856
5.24395 5.29354 5.34419 5.38932 5.49399 5.57262 5.62295 5.65445
6.01452 6.05656 6.36129 6.41166 6.42335 6.89936 6.95564 7.46235
8.96634
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.054448 B = 0.005155 C = 0.005018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 514.132482 B = 5430.321792 C = 5578.873870
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.141 4.141
3 C 0.142 3.858
4 C -0.128 4.128
5 O -0.563 6.563
6 C 0.028 3.972
7 N -0.530 5.530
8 C 0.066 3.934
9 C -0.093 4.093
10 C 0.045 3.955
11 C -0.536 4.536
12 H 0.048 0.952
13 C 0.013 3.987
14 N -0.918 5.918
15 Si 0.954 3.046
16 H -0.272 1.272
17 H -0.282 1.282
18 H -0.272 1.272
19 C -0.099 4.099
20 C 0.055 3.945
21 H 0.053 0.947
22 H 0.062 0.938
23 H 0.053 0.947
24 H 0.072 0.928
25 H 0.077 0.923
26 H 0.049 0.951
27 H 0.060 0.940
28 H 0.070 0.930
29 H 0.381 0.619
30 H 0.037 0.963
31 H 0.084 0.916
32 H 0.072 0.928
33 H 0.010 0.990
34 H 0.028 0.972
35 H 0.060 0.940
36 H -0.015 1.015
37 H 0.260 0.740
38 H 0.046 0.954
39 H 0.045 0.955
40 H 0.010 0.990
41 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.552 -12.972 -0.860 18.071
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.180 4.180
3 C 0.102 3.898
4 C -0.185 4.185
5 O -0.371 6.371
6 C -0.101 4.101
7 N -0.254 5.254
8 C -0.061 4.061
9 C -0.132 4.132
10 C 0.026 3.974
11 C -0.574 4.574
12 H 0.067 0.933
13 C -0.186 4.186
14 N -0.558 5.558
15 Si 0.779 3.221
16 H -0.197 1.197
17 H -0.208 1.208
18 H -0.197 1.197
19 C -0.136 4.136
20 C -0.072 4.072
21 H 0.072 0.928
22 H 0.081 0.919
23 H 0.072 0.928
24 H 0.091 0.909
25 H 0.096 0.904
26 H 0.068 0.932
27 H 0.079 0.921
28 H 0.089 0.911
29 H 0.230 0.770
30 H 0.055 0.945
31 H 0.103 0.897
32 H 0.090 0.910
33 H 0.029 0.971
34 H 0.047 0.953
35 H 0.078 0.922
36 H 0.003 0.997
37 H 0.069 0.931
38 H 0.065 0.935
39 H 0.064 0.936
40 H 0.028 0.972
41 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -12.906 -12.389 0.008 17.890
hybrid contribution 1.627 0.385 -0.834 1.869
sum -11.278 -12.004 -0.826 16.492
Atomic orbital electron populations
1.21699 0.94750 1.01674 1.02142 1.22114 0.97353 0.95162 1.03334
1.21218 0.90199 0.91913 0.86508 1.21602 1.00545 1.01102 0.95249
1.86532 1.77006 1.57211 1.16320 1.22897 0.96665 0.89439 1.01063
1.61901 1.18143 1.12709 1.32641 1.22075 0.87892 0.97731 0.98435
1.21392 1.00215 0.93001 0.98560 1.18655 0.91635 0.94080 0.93025
1.21577 0.96661 0.94163 1.44991 0.93335 1.25744 0.96434 1.01065
0.95319 1.70009 1.04297 1.33514 1.47937 0.85684 0.77105 0.80596
0.78699 1.19727 1.20773 1.19732 1.21524 0.97194 0.95617 0.99310
1.22449 1.02500 0.93029 0.89268 0.92780 0.91933 0.92755 0.90920
0.90406 0.93188 0.92106 0.91127 0.76974 0.94469 0.89720 0.90956
0.97129 0.95290 0.92202 0.99720 0.93080 0.93528 0.93630 0.97196
0.86850
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.26 9.41 71.98 0.68 -1.58 16
2 C -0.14 -2.29 5.17 30.59 0.16 -2.13 16
3 C 0.14 3.13 0.83 -10.80 -0.01 3.12 16
4 C -0.13 -3.14 8.26 71.98 0.59 -2.54 16
5 O -0.56 -12.96 9.26 -148.98 -1.38 -14.34 16
6 C 0.03 0.71 4.31 86.30 0.37 1.08 16
7 N -0.53 -18.32 3.56 -896.36 -3.19 -21.51 16
8 C 0.07 2.64 5.44 86.33 0.47 3.11 16
9 C -0.09 -4.64 5.12 30.65 0.16 -4.48 16
10 C 0.04 2.36 2.16 -11.46 -0.02 2.33 16
11 C -0.54 -30.99 8.56 25.60 0.22 -30.77 16
12 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16
13 C 0.01 0.73 5.31 84.66 0.45 1.18 16
14 N -0.92 -54.43 11.37 21.45 0.24 -54.19 16
15 Si 0.95 44.90 29.54 68.60 2.03 46.93 16
16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16
17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16
19 C -0.10 -4.39 5.32 30.65 0.16 -4.23 16
20 C 0.05 2.00 5.18 86.33 0.45 2.44 16
21 H 0.05 0.91 7.68 -2.39 -0.02 0.89 16
22 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16
23 H 0.05 0.89 6.43 -2.38 -0.02 0.87 16
24 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
26 H 0.05 1.55 7.44 -2.39 -0.02 1.53 16
27 H 0.06 1.37 6.43 -2.39 -0.02 1.35 16
28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
29 H 0.38 6.36 9.05 -74.05 -0.67 5.69 16
30 H 0.04 0.91 8.03 -2.39 -0.02 0.89 16
31 H 0.08 2.01 7.83 -2.38 -0.02 1.99 16
32 H 0.07 2.57 7.94 -2.39 -0.02 2.55 16
33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16
34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16
35 H 0.06 3.33 6.17 -2.39 -0.01 3.31 16
36 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16
37 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16
38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16
39 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16
40 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16
41 H 0.11 3.70 5.08 -2.38 -0.01 3.69 16
Total: -1.00 -63.81 309.68 1.69 -62.12
By element:
Atomic # 1 Polarization: 13.15 SS G_CDS: 0.31 Total: 13.46 kcal
Atomic # 6 Polarization: -36.14 SS G_CDS: 3.67 Total: -32.47 kcal
Atomic # 7 Polarization: -72.75 SS G_CDS: -2.95 Total: -75.70 kcal
Atomic # 8 Polarization: -12.96 SS G_CDS: -1.38 Total: -14.34 kcal
Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal
Total: -63.81 1.69 -62.12 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397180845.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.178 kcal
(2) G-P(sol) polarization free energy of solvation -63.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.985 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.298 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds