Wall clock time and date at job start Mon Mar 30 2020 03:29:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.47221 * 2 1
4 4 C 1.52994 * 109.47281 * 119.99832 * 2 1 3
5 5 C 1.53012 * 115.56045 * 34.31074 * 4 2 1
6 6 C 1.53004 * 117.50151 * 248.62450 * 4 2 1
7 7 C 1.52999 * 117.50146 * 180.02562 * 4 2 1
8 8 H 1.09000 * 117.51645 * 0.02562 * 7 4 2
9 9 N 1.46906 * 117.49959 * 214.98172 * 7 4 2
10 10 C 1.46898 * 110.99888 * 154.98491 * 9 7 4
11 11 C 1.53007 * 109.46764 * 179.97438 * 10 9 7
12 12 O 1.42897 * 109.47046 * 65.00004 * 11 10 9
13 13 C 1.42901 * 113.99910 * 179.97438 * 12 11 10
14 14 C 1.50697 * 109.47277 * 180.02562 * 13 12 11
15 15 H 1.08000 * 119.99977 * 359.97438 * 14 13 12
16 16 C 1.37878 * 120.00140 * 179.97438 * 14 13 12
17 17 N 1.31506 * 120.00016 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 119.99895 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.47210 * 60.00065 * 18 16 14
20 20 H 1.48503 * 109.47253 * 180.02562 * 18 16 14
21 21 H 1.48505 * 109.47350 * 300.00013 * 18 16 14
22 22 H 1.08995 * 109.46990 * 300.00273 * 1 2 3
23 23 H 1.09004 * 109.46977 * 60.00062 * 1 2 3
24 24 H 1.08992 * 109.47154 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47363 * 239.99929 * 2 1 3
26 26 H 1.09003 * 109.46886 * 300.00370 * 3 2 1
27 27 H 1.09001 * 109.47010 * 59.99713 * 3 2 1
28 28 H 1.08994 * 109.46869 * 180.02562 * 3 2 1
29 29 H 1.08997 * 109.46847 * 205.68642 * 5 4 2
30 30 H 1.09001 * 109.46905 * 325.68989 * 5 4 2
31 31 H 1.09003 * 109.46777 * 85.69051 * 5 4 2
32 32 H 1.09003 * 117.49822 * 145.01825 * 6 4 2
33 33 H 1.08997 * 117.49583 * 359.97438 * 6 4 2
34 34 H 1.00902 * 110.99923 * 278.94432 * 9 7 4
35 35 H 1.08995 * 109.47296 * 299.99911 * 10 9 7
36 36 H 1.08997 * 109.47334 * 60.00212 * 10 9 7
37 37 H 1.08997 * 109.46702 * 184.99892 * 11 10 9
38 38 H 1.09002 * 109.47126 * 304.99895 * 11 10 9
39 39 H 1.09001 * 109.47039 * 299.99914 * 13 12 11
40 40 H 1.09003 * 109.47349 * 59.99836 * 13 12 11
41 41 H 0.96998 * 120.00342 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.1852 -1.8963 1.7284
6 6 2.7419 0.1227 2.3151
7 6 3.5550 -0.8275 1.4346
8 1 4.1887 -0.3833 0.6669
9 7 4.0779 -2.0503 2.0586
10 6 5.4690 -2.2942 1.6544
11 6 5.9777 -3.5728 2.3234
12 8 5.2394 -4.6934 1.8324
13 6 5.6383 -5.9444 2.3962
14 6 4.7988 -7.0501 1.8100
15 1 4.0366 -6.8204 1.0802
16 6 5.0039 -8.3550 2.2053
17 7 5.9317 -8.6346 3.0944
18 14 3.9628 -9.7254 1.4792
19 1 4.1510 -9.7630 0.0067
20 1 4.3774 -11.0256 2.0650
21 1 2.5318 -9.4774 1.7891
22 1 -0.3633 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 1.8934 -0.5138 -0.8900
26 1 1.6766 1.9564 -0.8900
27 1 1.6767 1.9564 0.8900
28 1 3.1300 1.4425 -0.0005
29 1 1.3352 -2.0422 2.7981
30 1 0.1338 -1.6835 1.5345
31 1 1.4776 -2.8001 1.1938
32 1 2.5947 -0.1592 3.3577
33 1 2.8407 1.1916 2.1262
34 1 3.9954 -2.0073 3.0633
35 1 5.5184 -2.4059 0.5714
36 1 6.0895 -1.4523 1.9616
37 1 7.0351 -3.7061 2.0952
38 1 5.8458 -3.4954 3.4026
39 1 6.6887 -6.1268 2.1691
40 1 5.4998 -5.9165 3.4770
41 1 6.0758 -9.5525 3.3728
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397211157.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:39
Heat of formation + Delta-G solvation = -37.707307 kcal
Electronic energy + Delta-G solvation = -17453.955640 eV
Core-core repulsion = 14755.213702 eV
Total energy + Delta-G solvation = -2698.741937 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.38614 -36.87140 -34.84595 -32.77694 -32.06403 -29.21867 -28.11979 -26.51411
-25.99668 -23.06695 -22.26513 -21.52108 -21.09277 -18.11077 -16.45066 -16.17823
-15.73888 -15.36073 -14.68034 -14.58874 -14.34041 -13.75677 -13.30020 -13.16251
-13.00822 -12.72779 -12.43880 -12.20711 -11.95263 -11.66290 -11.53092 -11.42940
-11.19793 -11.01283 -10.81122 -10.72237 -10.63652 -10.42028 -10.25136 -9.96830
-9.47118 -9.04307 -8.74867 -8.09252 -7.88405 -6.05199 -4.06073 3.36652
3.38653 3.43252 3.79664 4.17587 4.40242 4.75672 4.79717 4.87397
4.97445 4.99496 5.10663 5.30544 5.31245 5.49795 5.54130 5.55185
5.60895 5.70172 5.78706 5.79065 5.83864 5.96092 5.98813 6.05204
6.11030 6.14339 6.17958 6.29234 6.34397 6.36700 6.65428 7.15966
7.28908 7.49434 7.58476 7.86590 8.22957 8.67876 9.08511 9.58591
11.06550
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.028393 B = 0.004395 C = 0.003962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 985.915365 B = 6369.646467 C = 7065.889912
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.059 4.059
3 C -0.148 4.148
4 C -0.108 4.108
5 C -0.110 4.110
6 C -0.209 4.209
7 C 0.035 3.965
8 H 0.103 0.897
9 N -0.641 5.641
10 C 0.067 3.933
11 C 0.065 3.935
12 O -0.380 6.380
13 C 0.194 3.806
14 C -0.511 4.511
15 H 0.066 0.934
16 C 0.055 3.945
17 N -0.901 5.901
18 Si 0.907 3.093
19 H -0.275 1.275
20 H -0.287 1.287
21 H -0.275 1.275
22 H 0.053 0.947
23 H 0.050 0.950
24 H 0.062 0.938
25 H 0.073 0.927
26 H 0.052 0.948
27 H 0.057 0.943
28 H 0.053 0.947
29 H 0.052 0.948
30 H 0.055 0.945
31 H 0.069 0.931
32 H 0.090 0.910
33 H 0.096 0.904
34 H 0.340 0.660
35 H 0.078 0.922
36 H 0.034 0.966
37 H 0.040 0.960
38 H 0.034 0.966
39 H 0.002 0.998
40 H 0.003 0.997
41 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.378 19.352 -3.022 20.599
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.078 4.078
3 C -0.206 4.206
4 C -0.109 4.109
5 C -0.167 4.167
6 C -0.248 4.248
7 C -0.076 4.076
8 H 0.121 0.879
9 N -0.271 5.271
10 C -0.062 4.062
11 C -0.014 4.014
12 O -0.299 6.299
13 C 0.119 3.881
14 C -0.549 4.549
15 H 0.084 0.916
16 C -0.145 4.145
17 N -0.541 5.541
18 Si 0.735 3.265
19 H -0.200 1.200
20 H -0.212 1.212
21 H -0.200 1.200
22 H 0.072 0.928
23 H 0.069 0.931
24 H 0.081 0.919
25 H 0.091 0.909
26 H 0.071 0.929
27 H 0.076 0.924
28 H 0.072 0.928
29 H 0.071 0.929
30 H 0.074 0.926
31 H 0.088 0.912
32 H 0.109 0.891
33 H 0.114 0.886
34 H 0.160 0.840
35 H 0.097 0.903
36 H 0.052 0.948
37 H 0.058 0.942
38 H 0.052 0.948
39 H 0.020 0.980
40 H 0.021 0.979
41 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -6.675 18.758 -3.528 20.221
hybrid contribution 0.334 -0.129 0.540 0.648
sum -6.342 18.629 -2.988 19.904
Atomic orbital electron populations
1.21886 0.95148 1.02061 1.01172 1.20566 0.95621 0.95034 0.96581
1.21965 1.00834 0.96296 1.01462 1.21776 0.94335 0.98484 0.96308
1.21279 0.97753 0.96703 1.00923 1.23845 1.06631 0.97799 0.96483
1.22540 0.93436 0.91288 1.00377 0.87907 1.59996 1.20176 1.33699
1.13192 1.22019 0.87592 0.95124 1.01425 1.22235 0.94690 0.87895
0.96544 1.87962 1.59952 1.15099 1.66911 1.20177 0.95034 0.79669
0.93183 1.21033 1.18895 0.90475 1.24481 0.91557 1.24941 0.95706
0.98658 0.95225 1.69953 1.32657 1.19863 1.31609 0.86405 0.80481
0.80306 0.79334 1.20037 1.21231 1.20002 0.92762 0.93133 0.91910
0.90911 0.92933 0.92403 0.92812 0.92887 0.92619 0.91174 0.89119
0.88617 0.84036 0.90342 0.94776 0.94154 0.94833 0.98035 0.97932
0.92697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.34 8.20 37.16 0.30 -1.03 16
2 C -0.06 -0.60 3.15 -90.62 -0.29 -0.89 16
3 C -0.15 -1.27 7.79 37.16 0.29 -0.98 16
4 C -0.11 -1.26 2.47 -154.50 -0.38 -1.65 16
5 C -0.11 -1.43 8.95 37.16 0.33 -1.10 16
6 C -0.21 -2.23 8.91 -26.75 -0.24 -2.47 16
7 C 0.03 0.43 5.65 -67.73 -0.38 0.05 16
8 H 0.10 1.23 7.36 -51.93 -0.38 0.84 16
9 N -0.64 -9.68 6.10 -106.75 -0.65 -10.33 16
10 C 0.07 1.03 5.92 -3.82 -0.02 1.01 16
11 C 0.06 1.22 6.22 37.16 0.23 1.45 16
12 O -0.38 -9.46 10.27 -35.23 -0.36 -9.82 16
13 C 0.19 5.47 5.69 36.00 0.20 5.67 16
14 C -0.51 -15.44 9.43 -34.44 -0.32 -15.76 16
15 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16
16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16
17 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16
18 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16
19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
24 H 0.06 0.60 6.45 -51.93 -0.33 0.27 16
25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
27 H 0.06 0.47 6.98 -51.93 -0.36 0.11 16
28 H 0.05 0.46 7.07 -51.93 -0.37 0.09 16
29 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16
30 H 0.05 0.63 5.59 -51.93 -0.29 0.34 16
31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16
32 H 0.09 0.98 7.99 -51.93 -0.42 0.56 16
33 H 0.10 0.89 5.85 -51.93 -0.30 0.59 16
34 H 0.34 4.90 8.52 -39.29 -0.33 4.56 16
35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16
36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16
38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
39 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16
40 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16
41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
LS Contribution 327.74 15.07 4.94 4.94
Total: -1.00 -31.51 327.74 -8.12 -39.63
By element:
Atomic # 1 Polarization: 6.61 SS G_CDS: -7.40 Total: -0.79 kcal
Atomic # 6 Polarization: -13.79 SS G_CDS: -0.37 Total: -14.16 kcal
Atomic # 7 Polarization: -37.16 SS G_CDS: 0.09 Total: -37.07 kcal
Atomic # 8 Polarization: -9.46 SS G_CDS: -0.36 Total: -9.82 kcal
Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal
Total LS contribution 4.94 Total: 4.94 kcal
Total: -31.51 -8.12 -39.63 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397211157.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.923 kcal
(2) G-P(sol) polarization free energy of solvation -31.506 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.583 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds