Wall clock time and date at job start Mon Mar 30 2020 03:29:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53004 * 109.47221 * 2 1
4 4 C 1.52994 * 109.47281 * 119.99832 * 2 1 3
5 5 C 1.53012 * 115.56045 * 34.31074 * 4 2 1
6 6 C 1.53004 * 117.50151 * 248.62450 * 4 2 1
7 7 C 1.52999 * 117.50146 * 180.02562 * 4 2 1
8 8 H 1.09000 * 117.51645 * 0.02562 * 7 4 2
9 9 N 1.46906 * 117.49959 * 214.98172 * 7 4 2
10 10 C 1.46898 * 110.99888 * 154.98491 * 9 7 4
11 11 C 1.53007 * 109.46764 * 179.97438 * 10 9 7
12 12 O 1.42897 * 109.47046 * 65.00004 * 11 10 9
13 13 C 1.42901 * 113.99910 * 179.97438 * 12 11 10
14 14 C 1.50697 * 109.47277 * 180.02562 * 13 12 11
15 15 H 1.08000 * 119.99977 * 359.97438 * 14 13 12
16 16 C 1.37878 * 120.00140 * 179.97438 * 14 13 12
17 17 N 1.31506 * 120.00016 * 0.02562 * 16 14 13
18 18 Si 1.86799 * 119.99895 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.47210 * 60.00065 * 18 16 14
20 20 H 1.48503 * 109.47253 * 180.02562 * 18 16 14
21 21 H 1.48505 * 109.47350 * 300.00013 * 18 16 14
22 22 H 1.08995 * 109.46990 * 300.00273 * 1 2 3
23 23 H 1.09004 * 109.46977 * 60.00062 * 1 2 3
24 24 H 1.08992 * 109.47154 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47363 * 239.99929 * 2 1 3
26 26 H 1.09003 * 109.46886 * 300.00370 * 3 2 1
27 27 H 1.09001 * 109.47010 * 59.99713 * 3 2 1
28 28 H 1.08994 * 109.46869 * 180.02562 * 3 2 1
29 29 H 1.08997 * 109.46847 * 205.68642 * 5 4 2
30 30 H 1.09001 * 109.46905 * 325.68989 * 5 4 2
31 31 H 1.09003 * 109.46777 * 85.69051 * 5 4 2
32 32 H 1.09003 * 117.49822 * 145.01825 * 6 4 2
33 33 H 1.08997 * 117.49583 * 359.97438 * 6 4 2
34 34 H 1.00902 * 110.99923 * 278.94432 * 9 7 4
35 35 H 1.08995 * 109.47296 * 299.99911 * 10 9 7
36 36 H 1.08997 * 109.47334 * 60.00212 * 10 9 7
37 37 H 1.08997 * 109.46702 * 184.99892 * 11 10 9
38 38 H 1.09002 * 109.47126 * 304.99895 * 11 10 9
39 39 H 1.09001 * 109.47039 * 299.99914 * 13 12 11
40 40 H 1.09003 * 109.47349 * 59.99836 * 13 12 11
41 41 H 0.96998 * 120.00342 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7212 1.2492
5 6 1.1852 -1.8963 1.7284
6 6 2.7419 0.1227 2.3151
7 6 3.5550 -0.8275 1.4346
8 1 4.1887 -0.3833 0.6669
9 7 4.0779 -2.0503 2.0586
10 6 5.4690 -2.2942 1.6544
11 6 5.9777 -3.5728 2.3234
12 8 5.2394 -4.6934 1.8324
13 6 5.6383 -5.9444 2.3962
14 6 4.7988 -7.0501 1.8100
15 1 4.0366 -6.8204 1.0802
16 6 5.0039 -8.3550 2.2053
17 7 5.9317 -8.6346 3.0944
18 14 3.9628 -9.7254 1.4792
19 1 4.1510 -9.7630 0.0067
20 1 4.3774 -11.0256 2.0650
21 1 2.5318 -9.4774 1.7891
22 1 -0.3633 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 1.8934 -0.5138 -0.8900
26 1 1.6766 1.9564 -0.8900
27 1 1.6767 1.9564 0.8900
28 1 3.1300 1.4425 -0.0005
29 1 1.3352 -2.0422 2.7981
30 1 0.1338 -1.6835 1.5345
31 1 1.4776 -2.8001 1.1938
32 1 2.5947 -0.1592 3.3577
33 1 2.8407 1.1916 2.1262
34 1 3.9954 -2.0073 3.0633
35 1 5.5184 -2.4059 0.5714
36 1 6.0895 -1.4523 1.9616
37 1 7.0351 -3.7061 2.0952
38 1 5.8458 -3.4954 3.4026
39 1 6.6887 -6.1268 2.1691
40 1 5.4998 -5.9165 3.4770
41 1 6.0758 -9.5525 3.3728
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397211157.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:38
Heat of formation + Delta-G solvation = -57.929496 kcal
Electronic energy + Delta-G solvation = -17454.832540 eV
Core-core repulsion = 14755.213702 eV
Total energy + Delta-G solvation = -2699.618837 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.32144 -38.64845 -36.08014 -34.85747 -33.22242 -30.23075 -29.80343 -28.25077
-26.90177 -24.48357 -23.89844 -22.92875 -22.05183 -19.01280 -18.61543 -17.55331
-17.21098 -16.76079 -16.36363 -16.01558 -15.37453 -15.12399 -14.93446 -14.44651
-14.02137 -13.89396 -13.59982 -13.39180 -13.27428 -13.05879 -12.85634 -12.72971
-12.50080 -12.37354 -12.27599 -12.20327 -11.90868 -11.74673 -11.44456 -11.28424
-11.15414 -10.85994 -10.44332 -10.19039 -8.95791 -8.31559 -6.43628 1.39479
1.44629 1.52990 2.35477 2.84530 3.02017 3.13340 3.24765 3.90401
3.93754 4.03417 4.09626 4.23245 4.27861 4.31361 4.47271 4.54809
4.67875 4.71006 4.77261 4.84469 4.85054 4.93513 4.98964 5.01932
5.04148 5.10868 5.11822 5.19382 5.26691 5.30055 5.47482 5.53132
5.55680 5.62600 5.97864 6.19658 6.45283 6.58049 6.86618 7.28651
8.80727
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.028393 B = 0.004395 C = 0.003962
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 985.915365 B = 6369.646467 C = 7065.889912
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.059 4.059
3 C -0.144 4.144
4 C -0.116 4.116
5 C -0.106 4.106
6 C -0.186 4.186
7 C 0.021 3.979
8 H 0.111 0.889
9 N -0.664 5.664
10 C 0.079 3.921
11 C 0.054 3.946
12 O -0.397 6.397
13 C 0.209 3.791
14 C -0.548 4.548
15 H 0.059 0.941
16 C 0.007 3.993
17 N -0.932 5.932
18 Si 0.982 3.018
19 H -0.265 1.265
20 H -0.273 1.273
21 H -0.266 1.266
22 H 0.059 0.941
23 H 0.062 0.938
24 H 0.052 0.948
25 H 0.060 0.940
26 H 0.062 0.938
27 H 0.064 0.936
28 H 0.054 0.946
29 H 0.044 0.956
30 H 0.070 0.930
31 H 0.037 0.963
32 H 0.090 0.910
33 H 0.116 0.884
34 H 0.341 0.659
35 H 0.070 0.930
36 H 0.070 0.930
37 H 0.049 0.951
38 H 0.039 0.961
39 H -0.016 1.016
40 H -0.017 1.017
41 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.195 20.454 -3.523 21.967
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.078 4.078
3 C -0.201 4.201
4 C -0.118 4.118
5 C -0.163 4.163
6 C -0.224 4.224
7 C -0.089 4.089
8 H 0.129 0.871
9 N -0.295 5.295
10 C -0.050 4.050
11 C -0.023 4.023
12 O -0.317 6.317
13 C 0.134 3.866
14 C -0.585 4.585
15 H 0.077 0.923
16 C -0.191 4.191
17 N -0.571 5.571
18 Si 0.805 3.195
19 H -0.190 1.190
20 H -0.198 1.198
21 H -0.191 1.191
22 H 0.078 0.922
23 H 0.081 0.919
24 H 0.071 0.929
25 H 0.078 0.922
26 H 0.081 0.919
27 H 0.083 0.917
28 H 0.073 0.927
29 H 0.063 0.937
30 H 0.089 0.911
31 H 0.056 0.944
32 H 0.108 0.892
33 H 0.134 0.866
34 H 0.161 0.839
35 H 0.089 0.911
36 H 0.088 0.912
37 H 0.067 0.933
38 H 0.057 0.943
39 H 0.002 0.998
40 H 0.001 0.999
41 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -7.487 19.891 -4.029 21.632
hybrid contribution 0.619 -0.407 0.731 1.041
sum -6.868 19.484 -3.298 20.921
Atomic orbital electron populations
1.21864 0.94436 1.01723 1.02059 1.20576 0.96252 0.95882 0.95103
1.21929 1.00876 0.94982 1.02342 1.21851 0.93659 0.98555 0.97688
1.21215 0.99084 0.96100 0.99925 1.23843 1.04232 0.98418 0.95951
1.22593 0.93863 0.91102 1.01353 0.87104 1.59947 1.20169 1.35830
1.13517 1.21896 0.88506 0.94080 1.00500 1.22607 0.94949 0.87404
0.97343 1.87918 1.61162 1.15360 1.67223 1.19793 0.93721 0.81226
0.91901 1.21353 1.19737 0.92011 1.25410 0.92316 1.25947 0.96793
1.01182 0.95192 1.70057 1.33759 1.20984 1.32290 0.85252 0.78654
0.76781 0.78834 1.19002 1.19781 1.19113 0.92214 0.91893 0.92868
0.92165 0.91912 0.91678 0.92716 0.93663 0.91092 0.94403 0.89176
0.86574 0.83933 0.91128 0.91182 0.93278 0.94275 0.99831 0.99922
0.92031
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.41 8.20 71.98 0.59 -1.82 16
2 C -0.06 -1.12 3.15 -10.79 -0.03 -1.16 16
3 C -0.14 -2.09 7.79 71.98 0.56 -1.53 16
4 C -0.12 -2.61 2.47 -52.18 -0.13 -2.74 16
5 C -0.11 -2.79 8.95 71.99 0.64 -2.14 16
6 C -0.19 -3.57 8.91 30.58 0.27 -3.30 16
7 C 0.02 0.51 5.65 44.90 0.25 0.76 16
8 H 0.11 2.44 7.36 -2.39 -0.02 2.43 16
9 N -0.66 -19.82 6.10 -491.64 -3.00 -22.82 16
10 C 0.08 2.35 5.92 86.31 0.51 2.86 16
11 C 0.05 2.06 6.22 71.98 0.45 2.51 16
12 O -0.40 -20.33 10.27 -148.98 -1.53 -21.86 16
13 C 0.21 12.20 5.69 71.23 0.41 12.60 16
14 C -0.55 -33.86 9.43 25.60 0.24 -33.62 16
15 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16
16 C 0.01 0.43 5.46 84.66 0.46 0.89 16
17 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16
18 Si 0.98 45.55 29.54 68.60 2.03 47.57 16
19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16
20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
23 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16
24 H 0.05 0.98 6.45 -2.39 -0.02 0.96 16
25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16
27 H 0.06 0.86 6.98 -2.39 -0.02 0.84 16
28 H 0.05 0.79 7.07 -2.39 -0.02 0.77 16
29 H 0.04 1.22 7.90 -2.39 -0.02 1.20 16
30 H 0.07 1.59 5.59 -2.39 -0.01 1.58 16
31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16
32 H 0.09 1.77 7.99 -2.39 -0.02 1.75 16
33 H 0.12 1.78 5.85 -2.39 -0.01 1.77 16
34 H 0.34 9.73 8.52 -89.69 -0.76 8.96 16
35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16
37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
39 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16
40 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16
41 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16
Total: -1.00 -68.22 327.74 2.23 -66.00
By element:
Atomic # 1 Polarization: 14.55 SS G_CDS: 0.22 Total: 14.77 kcal
Atomic # 6 Polarization: -30.93 SS G_CDS: 4.23 Total: -26.70 kcal
Atomic # 7 Polarization: -77.06 SS G_CDS: -2.71 Total: -79.77 kcal
Atomic # 8 Polarization: -20.33 SS G_CDS: -1.53 Total: -21.86 kcal
Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal
Total: -68.22 2.23 -66.00 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397211157.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.066 kcal
(2) G-P(sol) polarization free energy of solvation -68.221 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.155 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds