Wall clock time and date at job start Mon Mar 30 2020 03:29:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.46982 * 2 1
4 4 C 1.52998 * 109.46854 * 119.99939 * 2 1 3
5 5 C 1.52995 * 115.56510 * 325.68733 * 4 2 1
6 6 C 1.52999 * 117.49843 * 111.38150 * 4 2 1
7 7 C 1.53002 * 60.00343 * 107.48672 * 6 4 2
8 8 H 1.08998 * 117.49177 * 252.48804 * 7 6 4
9 9 N 1.46893 * 117.49863 * 107.48944 * 7 6 4
10 10 C 1.46905 * 110.99831 * 136.39254 * 9 7 6
11 11 C 1.53006 * 109.46980 * 179.97438 * 10 9 7
12 12 O 1.42904 * 109.46946 * 64.99979 * 11 10 9
13 13 C 1.42901 * 113.99537 * 179.97438 * 12 11 10
14 14 C 1.50703 * 109.46890 * 180.02562 * 13 12 11
15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 12
16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12
17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13
19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14
20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14
21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14
22 22 H 1.08999 * 109.46954 * 300.00439 * 1 2 3
23 23 H 1.08999 * 109.46914 * 60.00141 * 1 2 3
24 24 H 1.08998 * 109.46921 * 180.02562 * 1 2 3
25 25 H 1.08999 * 109.46954 * 239.99561 * 2 1 3
26 26 H 1.09010 * 109.46805 * 179.97438 * 3 2 1
27 27 H 1.08999 * 109.47181 * 299.99696 * 3 2 1
28 28 H 1.08992 * 109.47283 * 60.00101 * 3 2 1
29 29 H 1.09003 * 109.47419 * 274.31087 * 5 4 2
30 30 H 1.09004 * 109.47014 * 34.31308 * 5 4 2
31 31 H 1.09003 * 109.47409 * 154.31384 * 5 4 2
32 32 H 1.08999 * 117.49950 * 359.97438 * 6 4 2
33 33 H 1.09002 * 117.49520 * 214.97915 * 6 4 2
34 34 H 1.00901 * 111.00408 * 12.43613 * 9 7 6
35 35 H 1.08993 * 109.46832 * 60.00024 * 10 9 7
36 36 H 1.08994 * 109.47037 * 299.99481 * 10 9 7
37 37 H 1.08996 * 109.47172 * 305.00162 * 11 10 9
38 38 H 1.08997 * 109.46636 * 184.99637 * 11 10 9
39 39 H 1.09003 * 109.46905 * 60.00448 * 13 12 11
40 40 H 1.08996 * 109.47465 * 299.99930 * 13 12 11
41 41 H 0.96998 * 119.99255 * 0.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 1.1852 -0.5487 2.5064
6 6 2.7419 -2.0662 1.0514
7 6 3.5550 -0.8281 1.4343
8 1 4.1887 -0.3848 0.6661
9 7 4.0775 -0.7571 2.8054
10 6 5.4685 -0.2847 2.8148
11 6 5.9765 -0.2235 4.2568
12 8 6.0218 -1.5436 4.8022
13 6 6.4859 -1.5987 6.1526
14 6 6.4936 -3.0304 6.6231
15 1 6.1754 -3.8193 5.9575
16 6 6.9057 -3.3332 7.9035
17 7 7.2927 -2.3727 8.7142
18 14 6.9158 -5.1079 8.4862
19 1 5.6029 -5.4356 9.0980
20 1 7.9911 -5.2920 9.4938
21 1 7.1615 -6.0072 7.3303
22 1 -0.3633 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 1.8933 -0.5139 -0.8899
26 1 3.1301 1.4425 0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6767 1.9563 0.8899
29 1 1.4776 0.3662 3.0219
30 1 0.1338 -0.4871 2.2253
31 1 1.3351 -1.4021 3.1677
32 1 2.8400 -2.4375 0.0313
33 1 2.5946 -2.8282 1.8169
34 1 3.9953 -1.6488 3.2703
35 1 5.5176 0.7092 2.3702
36 1 6.0893 -0.9713 2.2394
37 1 5.3040 0.3931 4.8531
38 1 6.9764 0.2103 4.2715
39 1 5.8243 -1.0105 6.7885
40 1 7.4964 -1.1936 6.2065
41 1 7.2877 -1.4512 8.4113
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397211158.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:42
Heat of formation + Delta-G solvation = -48.230578 kcal
Electronic energy + Delta-G solvation = -17436.550377 eV
Core-core repulsion = 14737.352117 eV
Total energy + Delta-G solvation = -2699.198260 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.28483 -37.10744 -34.92812 -33.12654 -32.29293 -28.72248 -27.88101 -26.94421
-26.09689 -22.62675 -22.51228 -21.62063 -21.28427 -18.28010 -17.01332 -16.05897
-15.74884 -15.48554 -14.98261 -14.62367 -13.84930 -13.76925 -13.50702 -13.22359
-12.96908 -12.87915 -12.58739 -12.26615 -12.25234 -11.65220 -11.54753 -11.37095
-11.27882 -11.24789 -11.18079 -10.71082 -10.59761 -10.43159 -10.18309 -10.11288
-9.54606 -8.87067 -8.63967 -8.25252 -8.00434 -6.47269 -4.15967 3.42026
3.46233 3.62612 3.74115 4.15768 4.43412 4.69420 4.71476 4.82112
4.91526 4.96333 5.14625 5.28655 5.30881 5.39654 5.45440 5.51150
5.59845 5.65906 5.74192 5.77136 5.82093 5.87492 5.91142 5.98831
6.03195 6.10232 6.14878 6.21829 6.22258 6.25724 6.52328 6.76326
7.12651 7.23670 7.58865 7.87655 8.16994 8.62322 8.79936 9.54788
10.93111
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.037101 B = 0.003985 C = 0.003791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 754.523259 B = 7024.102788 C = 7383.907168
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.058 4.058
3 C -0.142 4.142
4 C -0.111 4.111
5 C -0.108 4.108
6 C -0.202 4.202
7 C 0.035 3.965
8 H 0.103 0.897
9 N -0.653 5.653
10 C 0.069 3.931
11 C 0.059 3.941
12 O -0.391 6.391
13 C 0.188 3.812
14 C -0.597 4.597
15 H 0.060 0.940
16 C 0.016 3.984
17 N -0.911 5.911
18 Si 1.082 2.918
19 H -0.286 1.286
20 H -0.283 1.283
21 H -0.287 1.287
22 H 0.061 0.939
23 H 0.050 0.950
24 H 0.054 0.946
25 H 0.065 0.935
26 H 0.053 0.947
27 H 0.049 0.951
28 H 0.057 0.943
29 H 0.062 0.938
30 H 0.056 0.944
31 H 0.055 0.945
32 H 0.089 0.911
33 H 0.096 0.904
34 H 0.357 0.643
35 H 0.076 0.924
36 H 0.036 0.964
37 H 0.047 0.953
38 H 0.041 0.959
39 H -0.004 1.004
40 H -0.006 1.006
41 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.742 5.723 -17.228 21.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.076 4.076
3 C -0.199 4.199
4 C -0.112 4.112
5 C -0.165 4.165
6 C -0.240 4.240
7 C -0.076 4.076
8 H 0.121 0.879
9 N -0.284 5.284
10 C -0.060 4.060
11 C -0.019 4.019
12 O -0.310 6.310
13 C 0.114 3.886
14 C -0.635 4.635
15 H 0.078 0.922
16 C -0.187 4.187
17 N -0.547 5.547
18 Si 0.909 3.091
19 H -0.212 1.212
20 H -0.208 1.208
21 H -0.213 1.213
22 H 0.080 0.920
23 H 0.069 0.931
24 H 0.073 0.927
25 H 0.084 0.916
26 H 0.072 0.928
27 H 0.068 0.932
28 H 0.076 0.924
29 H 0.081 0.919
30 H 0.075 0.925
31 H 0.074 0.926
32 H 0.108 0.892
33 H 0.114 0.886
34 H 0.178 0.822
35 H 0.094 0.906
36 H 0.054 0.946
37 H 0.065 0.935
38 H 0.059 0.941
39 H 0.014 0.986
40 H 0.012 0.988
41 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -10.674 5.213 -15.874 19.827
hybrid contribution 0.275 0.521 -1.519 1.630
sum -10.399 5.735 -17.393 21.060
Atomic orbital electron populations
1.21891 0.95154 1.01695 1.01557 1.20629 0.95609 0.95803 0.95576
1.21784 1.01040 0.95734 1.01391 1.21768 0.94243 0.98455 0.96737
1.21258 0.97897 1.02488 0.94864 1.23736 1.06105 0.91760 1.02426
1.22502 0.93066 1.00661 0.91406 0.87939 1.60161 1.19481 1.35267
1.13471 1.21968 0.88202 0.99747 0.96127 1.22353 0.98445 0.87537
0.93558 1.87820 1.87513 1.24652 1.31043 1.20264 0.92206 0.98457
0.77708 1.21923 1.48657 0.91975 1.00923 0.92190 1.25940 0.93341
1.06651 0.92735 1.70769 1.44436 1.01377 1.38150 0.83368 0.76934
0.73187 0.75623 1.21215 1.20838 1.21274 0.92016 0.93087 0.92681
0.91622 0.92783 0.93175 0.92437 0.91881 0.92510 0.92641 0.89209
0.88608 0.82216 0.90564 0.94590 0.93524 0.94095 0.98618 0.98832
0.92254
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.22 8.20 37.16 0.30 -0.92 16
2 C -0.06 -0.54 2.99 -90.62 -0.27 -0.81 16
3 C -0.14 -1.29 9.03 37.16 0.34 -0.95 16
4 C -0.11 -1.24 1.91 -154.51 -0.29 -1.53 16
5 C -0.11 -1.27 8.95 37.15 0.33 -0.94 16
6 C -0.20 -2.35 9.52 -26.73 -0.25 -2.60 16
7 C 0.03 0.44 5.49 -67.71 -0.37 0.06 16
8 H 0.10 1.21 7.36 -51.93 -0.38 0.82 16
9 N -0.65 -9.89 6.15 -106.72 -0.66 -10.55 16
10 C 0.07 1.05 5.96 -3.82 -0.02 1.03 16
11 C 0.06 1.11 6.28 37.16 0.23 1.34 16
12 O -0.39 -9.48 9.85 -35.23 -0.35 -9.82 16
13 C 0.19 5.20 5.00 36.01 0.18 5.38 16
14 C -0.60 -17.92 9.43 -34.44 -0.32 -18.24 16
15 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16
16 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16
17 N -0.91 -28.20 13.65 55.43 0.76 -27.44 16
18 Si 1.08 25.69 29.90 -169.99 -5.08 20.60 16
19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16
20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16
22 H 0.06 0.52 6.45 -51.93 -0.33 0.19 16
23 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
25 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16
26 H 0.05 0.51 7.29 -51.92 -0.38 0.13 16
27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
30 H 0.06 0.58 5.59 -51.93 -0.29 0.29 16
31 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16
32 H 0.09 0.93 8.05 -51.93 -0.42 0.52 16
33 H 0.10 1.20 7.99 -51.93 -0.42 0.78 16
34 H 0.36 6.10 8.08 -39.29 -0.32 5.78 16
35 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16
36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16
38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
39 H 0.00 -0.11 8.01 -51.93 -0.42 -0.53 16
40 H -0.01 -0.17 8.01 -51.93 -0.42 -0.58 16
41 H 0.27 8.23 7.22 -40.82 -0.29 7.93 16
LS Contribution 330.02 15.07 4.97 4.97
Total: -1.00 -31.14 330.02 -8.10 -39.24
By element:
Atomic # 1 Polarization: 8.28 SS G_CDS: -7.49 Total: 0.79 kcal
Atomic # 6 Polarization: -17.54 SS G_CDS: -0.25 Total: -17.79 kcal
Atomic # 7 Polarization: -38.09 SS G_CDS: 0.10 Total: -37.99 kcal
Atomic # 8 Polarization: -9.48 SS G_CDS: -0.35 Total: -9.82 kcal
Atomic # 14 Polarization: 25.69 SS G_CDS: -5.08 Total: 20.60 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -31.14 -8.10 -39.24 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397211158.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.989 kcal
(2) G-P(sol) polarization free energy of solvation -31.142 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.130 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.242 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.231 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds