Wall clock time and date at job start Mon Mar 30 2020 03:29:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.46982 * 2 1
4 4 C 1.52998 * 109.46854 * 119.99939 * 2 1 3
5 5 C 1.52995 * 115.56510 * 325.68733 * 4 2 1
6 6 C 1.52999 * 117.49843 * 111.38150 * 4 2 1
7 7 C 1.53002 * 60.00343 * 107.48672 * 6 4 2
8 8 H 1.08998 * 117.49177 * 252.48804 * 7 6 4
9 9 N 1.46893 * 117.49863 * 107.48944 * 7 6 4
10 10 C 1.46905 * 110.99831 * 136.39254 * 9 7 6
11 11 C 1.53006 * 109.46980 * 179.97438 * 10 9 7
12 12 O 1.42904 * 109.46946 * 64.99979 * 11 10 9
13 13 C 1.42901 * 113.99537 * 179.97438 * 12 11 10
14 14 C 1.50703 * 109.46890 * 180.02562 * 13 12 11
15 15 H 1.08006 * 120.00159 * 359.97438 * 14 13 12
16 16 C 1.37877 * 120.00120 * 180.02562 * 14 13 12
17 17 N 1.31514 * 120.00089 * 359.97438 * 16 14 13
18 18 Si 1.86798 * 119.99938 * 180.02562 * 16 14 13
19 19 H 1.48506 * 109.47297 * 269.99556 * 18 16 14
20 20 H 1.48503 * 109.47261 * 149.99737 * 18 16 14
21 21 H 1.48500 * 109.47454 * 29.99730 * 18 16 14
22 22 H 1.08999 * 109.46954 * 300.00439 * 1 2 3
23 23 H 1.08999 * 109.46914 * 60.00141 * 1 2 3
24 24 H 1.08998 * 109.46921 * 180.02562 * 1 2 3
25 25 H 1.08999 * 109.46954 * 239.99561 * 2 1 3
26 26 H 1.09010 * 109.46805 * 179.97438 * 3 2 1
27 27 H 1.08999 * 109.47181 * 299.99696 * 3 2 1
28 28 H 1.08992 * 109.47283 * 60.00101 * 3 2 1
29 29 H 1.09003 * 109.47419 * 274.31087 * 5 4 2
30 30 H 1.09004 * 109.47014 * 34.31308 * 5 4 2
31 31 H 1.09003 * 109.47409 * 154.31384 * 5 4 2
32 32 H 1.08999 * 117.49950 * 359.97438 * 6 4 2
33 33 H 1.09002 * 117.49520 * 214.97915 * 6 4 2
34 34 H 1.00901 * 111.00408 * 12.43613 * 9 7 6
35 35 H 1.08993 * 109.46832 * 60.00024 * 10 9 7
36 36 H 1.08994 * 109.47037 * 299.99481 * 10 9 7
37 37 H 1.08996 * 109.47172 * 305.00162 * 11 10 9
38 38 H 1.08997 * 109.46636 * 184.99637 * 11 10 9
39 39 H 1.09003 * 109.46905 * 60.00448 * 13 12 11
40 40 H 1.08996 * 109.47465 * 299.99930 * 13 12 11
41 41 H 0.96998 * 119.99255 * 0.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7212 1.2493
5 6 1.1852 -0.5487 2.5064
6 6 2.7419 -2.0662 1.0514
7 6 3.5550 -0.8281 1.4343
8 1 4.1887 -0.3848 0.6661
9 7 4.0775 -0.7571 2.8054
10 6 5.4685 -0.2847 2.8148
11 6 5.9765 -0.2235 4.2568
12 8 6.0218 -1.5436 4.8022
13 6 6.4859 -1.5987 6.1526
14 6 6.4936 -3.0304 6.6231
15 1 6.1754 -3.8193 5.9575
16 6 6.9057 -3.3332 7.9035
17 7 7.2927 -2.3727 8.7142
18 14 6.9158 -5.1079 8.4862
19 1 5.6029 -5.4356 9.0980
20 1 7.9911 -5.2920 9.4938
21 1 7.1615 -6.0072 7.3303
22 1 -0.3633 0.5139 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 1.8933 -0.5139 -0.8899
26 1 3.1301 1.4425 0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6767 1.9563 0.8899
29 1 1.4776 0.3662 3.0219
30 1 0.1338 -0.4871 2.2253
31 1 1.3351 -1.4021 3.1677
32 1 2.8400 -2.4375 0.0313
33 1 2.5946 -2.8282 1.8169
34 1 3.9953 -1.6488 3.2703
35 1 5.5176 0.7092 2.3702
36 1 6.0893 -0.9713 2.2394
37 1 5.3040 0.3931 4.8531
38 1 6.9764 0.2103 4.2715
39 1 5.8243 -1.0105 6.7885
40 1 7.4964 -1.1936 6.2065
41 1 7.2877 -1.4512 8.4113
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397211158.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:42
Heat of formation + Delta-G solvation = -67.702643 kcal
Electronic energy + Delta-G solvation = -17437.394749 eV
Core-core repulsion = 14737.352117 eV
Total energy + Delta-G solvation = -2700.042633 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.24106 -38.88547 -36.15856 -35.14100 -33.47612 -29.94563 -29.24755 -28.02424
-27.67739 -24.78019 -23.46224 -22.92142 -22.32939 -19.29951 -19.08494 -17.59127
-17.23830 -16.63535 -16.28899 -15.78765 -15.69450 -15.14387 -14.88495 -14.55150
-14.24012 -13.80282 -13.71165 -13.56062 -13.29462 -13.19363 -13.05810 -12.77719
-12.52978 -12.38288 -12.15624 -12.02983 -11.97674 -11.91525 -11.38443 -11.24676
-10.89406 -10.86081 -10.50681 -10.38189 -9.12774 -8.85593 -6.56759 1.51572
1.61238 1.81060 2.47821 2.74888 3.01698 3.04256 3.10345 3.82878
3.87980 3.93130 4.07283 4.13707 4.28043 4.34631 4.39421 4.44937
4.50601 4.60855 4.70925 4.75083 4.82024 4.86692 4.88447 4.91645
5.00225 5.04068 5.06716 5.07899 5.21334 5.25845 5.43668 5.48906
5.63515 5.64394 5.89746 6.11145 6.28890 6.30870 6.61549 7.24316
8.55635
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.037101 B = 0.003985 C = 0.003791
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 754.523259 B = 7024.102788 C = 7383.907168
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.056 4.056
3 C -0.140 4.140
4 C -0.102 4.102
5 C -0.107 4.107
6 C -0.200 4.200
7 C 0.022 3.978
8 H 0.115 0.885
9 N -0.662 5.662
10 C 0.079 3.921
11 C 0.052 3.948
12 O -0.403 6.403
13 C 0.198 3.802
14 C -0.624 4.624
15 H 0.054 0.946
16 C -0.029 4.029
17 N -0.928 5.928
18 Si 1.131 2.869
19 H -0.267 1.267
20 H -0.275 1.275
21 H -0.270 1.270
22 H 0.058 0.942
23 H 0.064 0.936
24 H 0.054 0.946
25 H 0.074 0.926
26 H 0.049 0.951
27 H 0.064 0.936
28 H 0.048 0.952
29 H 0.050 0.950
30 H 0.073 0.927
31 H 0.037 0.963
32 H 0.106 0.894
33 H 0.082 0.918
34 H 0.341 0.659
35 H 0.106 0.894
36 H 0.035 0.965
37 H 0.044 0.956
38 H 0.051 0.949
39 H -0.019 1.019
40 H -0.018 1.018
41 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.426 5.346 -18.694 22.552
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.074 4.074
3 C -0.198 4.198
4 C -0.103 4.103
5 C -0.164 4.164
6 C -0.239 4.239
7 C -0.088 4.088
8 H 0.133 0.867
9 N -0.291 5.291
10 C -0.050 4.050
11 C -0.025 4.025
12 O -0.323 6.323
13 C 0.123 3.877
14 C -0.661 4.661
15 H 0.072 0.928
16 C -0.227 4.227
17 N -0.565 5.565
18 Si 0.950 3.050
19 H -0.193 1.193
20 H -0.200 1.200
21 H -0.195 1.195
22 H 0.077 0.923
23 H 0.083 0.917
24 H 0.073 0.927
25 H 0.092 0.908
26 H 0.068 0.932
27 H 0.083 0.917
28 H 0.067 0.933
29 H 0.069 0.931
30 H 0.092 0.908
31 H 0.057 0.943
32 H 0.125 0.875
33 H 0.101 0.899
34 H 0.161 0.839
35 H 0.124 0.876
36 H 0.053 0.947
37 H 0.062 0.938
38 H 0.069 0.931
39 H -0.001 1.001
40 H 0.000 1.000
41 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -11.371 4.877 -17.377 21.332
hybrid contribution 0.459 0.732 -1.126 1.419
sum -10.912 5.609 -18.503 22.201
Atomic orbital electron populations
1.21878 0.94287 1.01880 1.02127 1.20660 0.96317 0.95791 0.94658
1.21768 1.00781 0.95504 1.01720 1.21838 0.93100 0.98153 0.97244
1.21236 0.99170 1.01052 0.94908 1.23749 1.05751 0.91474 1.02892
1.22612 0.94058 1.01902 0.90260 0.86700 1.60208 1.19299 1.34377
1.15261 1.21934 0.88258 1.01380 0.93439 1.22670 0.99310 0.85109
0.95431 1.87780 1.87291 1.28034 1.29147 1.19936 0.91201 0.97216
0.79333 1.22282 1.49298 0.92930 1.01593 0.92803 1.27630 0.91801
1.10430 0.92817 1.70897 1.45679 1.01274 1.38615 0.82779 0.78010
0.68184 0.76031 1.19270 1.20009 1.19455 0.92306 0.91699 0.92691
0.90796 0.93172 0.91676 0.93295 0.93084 0.90840 0.94336 0.87543
0.89917 0.83946 0.87591 0.94708 0.93814 0.93050 1.00141 1.00023
0.93502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.08 8.20 71.98 0.59 -1.49 16
2 C -0.06 -0.92 2.99 -10.79 -0.03 -0.95 16
3 C -0.14 -2.24 9.03 71.98 0.65 -1.59 16
4 C -0.10 -2.15 1.91 -52.18 -0.10 -2.25 16
5 C -0.11 -2.46 8.95 71.98 0.64 -1.82 16
6 C -0.20 -4.44 9.52 30.59 0.29 -4.15 16
7 C 0.02 0.53 5.49 44.92 0.25 0.77 16
8 H 0.12 2.46 7.36 -2.39 -0.02 2.44 16
9 N -0.66 -19.83 6.15 -491.56 -3.02 -22.85 16
10 C 0.08 2.34 5.96 86.30 0.51 2.85 16
11 C 0.05 1.95 6.28 71.98 0.45 2.40 16
12 O -0.40 -19.88 9.85 -148.98 -1.47 -21.35 16
13 C 0.20 11.26 5.00 71.24 0.36 11.62 16
14 C -0.62 -37.97 9.43 25.60 0.24 -37.73 16
15 H 0.05 3.27 7.81 -2.91 -0.02 3.25 16
16 C -0.03 -1.73 5.46 84.65 0.46 -1.27 16
17 N -0.93 -57.97 13.65 21.45 0.29 -57.68 16
18 Si 1.13 50.82 29.90 68.60 2.05 52.87 16
19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16
20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16
21 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16
22 H 0.06 0.88 6.45 -2.39 -0.02 0.86 16
23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
25 H 0.07 1.13 7.90 -2.39 -0.02 1.11 16
26 H 0.05 0.83 7.29 -2.38 -0.02 0.82 16
27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
30 H 0.07 1.42 5.59 -2.38 -0.01 1.41 16
31 H 0.04 1.00 7.90 -2.39 -0.02 0.98 16
32 H 0.11 1.99 8.05 -2.39 -0.02 1.97 16
33 H 0.08 2.06 7.99 -2.39 -0.02 2.04 16
34 H 0.34 11.88 8.08 -89.69 -0.72 11.16 16
35 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16
36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16
39 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16
40 H -0.02 -1.04 8.01 -2.39 -0.02 -1.05 16
41 H 0.26 16.14 7.22 -92.71 -0.67 15.47 16
Total: -1.00 -66.69 330.02 2.52 -64.17
By element:
Atomic # 1 Polarization: 18.07 SS G_CDS: 0.35 Total: 18.43 kcal
Atomic # 6 Polarization: -37.91 SS G_CDS: 4.32 Total: -33.59 kcal
Atomic # 7 Polarization: -77.80 SS G_CDS: -2.73 Total: -80.53 kcal
Atomic # 8 Polarization: -19.88 SS G_CDS: -1.47 Total: -21.35 kcal
Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal
Total: -66.69 2.52 -64.17 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397211158.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.530 kcal
(2) G-P(sol) polarization free energy of solvation -66.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.224 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.703 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds