Wall clock time and date at job start Mon Mar 30 2020 03:52:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53000 * 109.47345 * 2 1
4 4 C 1.52996 * 109.47275 * 239.99771 * 2 1 3
5 5 C 1.53006 * 109.47177 * 119.99832 * 2 1 3
6 6 H 1.09002 * 109.46824 * 300.00279 * 5 2 1
7 7 O 1.42899 * 109.47421 * 180.02562 * 5 2 1
8 8 C 1.53000 * 109.46846 * 59.99862 * 5 2 1
9 9 N 1.46901 * 109.46769 * 185.00040 * 8 5 2
10 10 C 1.48534 * 111.00172 * 52.60936 * 9 8 5
11 11 C 1.54933 * 103.22824 * 159.71827 * 10 9 8
12 12 C 1.54594 * 102.92252 * 322.58255 * 11 10 9
13 13 H 1.09002 * 110.39476 * 263.00093 * 12 11 10
14 14 C 1.50703 * 110.30842 * 140.87414 * 12 11 10
15 15 H 1.07995 * 119.99785 * 244.28913 * 14 12 11
16 16 C 1.37877 * 119.99869 * 64.28221 * 14 12 11
17 17 N 1.31513 * 120.00121 * 0.02562 * 16 14 12
18 18 Si 1.86798 * 119.99986 * 179.97438 * 16 14 12
19 19 H 1.48496 * 109.47002 * 90.00152 * 18 16 14
20 20 H 1.48498 * 109.47116 * 210.00318 * 18 16 14
21 21 H 1.48506 * 109.46932 * 330.00516 * 18 16 14
22 22 C 1.47912 * 110.99681 * 170.00135 * 9 8 5
23 23 H 1.08990 * 109.47113 * 300.00243 * 1 2 3
24 24 H 1.08998 * 109.46717 * 60.00385 * 1 2 3
25 25 H 1.09001 * 109.46640 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47624 * 179.97438 * 3 2 1
27 27 H 1.09002 * 109.46642 * 299.99939 * 3 2 1
28 28 H 1.09002 * 109.47069 * 59.99469 * 3 2 1
29 29 H 1.09001 * 109.47336 * 299.99634 * 4 2 1
30 30 H 1.08998 * 109.47375 * 60.00247 * 4 2 1
31 31 H 1.09001 * 109.47456 * 179.97438 * 4 2 1
32 32 H 0.96702 * 113.99557 * 300.00370 * 7 5 2
33 33 H 1.09002 * 109.47398 * 305.00335 * 8 5 2
34 34 H 1.09001 * 109.47194 * 65.00515 * 8 5 2
35 35 H 1.08997 * 110.66294 * 278.15766 * 10 9 8
36 36 H 1.09001 * 110.66815 * 41.27720 * 10 9 8
37 37 H 1.09002 * 110.72385 * 204.22928 * 11 10 9
38 38 H 1.09000 * 110.87522 * 81.01746 * 11 10 9
39 39 H 0.96996 * 120.00088 * 179.97438 * 17 16 14
40 40 H 1.08997 * 109.91505 * 333.51116 * 22 9 8
41 41 H 1.08999 * 109.91449 * 94.60846 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 2.0401 -0.7212 1.2493
6 1 1.6767 -0.2074 2.1393
7 8 3.4690 -0.7207 1.2497
8 6 1.5300 -2.1637 1.2493
9 7 1.9186 -2.8204 2.5046
10 6 1.4946 -2.0166 3.6794
11 6 1.4923 -3.0499 4.8338
12 6 0.9670 -4.3324 4.1489
13 1 -0.1031 -4.4449 4.3229
14 6 1.7092 -5.5401 4.6605
15 1 2.3262 -6.1190 3.9894
16 6 1.6004 -5.9058 5.9854
17 7 0.8487 -5.2011 6.8026
18 14 2.5198 -7.4032 6.6195
19 1 3.8631 -6.9922 7.1008
20 1 1.7585 -8.0142 7.7386
21 1 2.6685 -8.3937 5.5230
22 6 1.2460 -4.1299 2.6480
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 3.1301 1.4425 0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6767 1.9564 0.8900
29 1 1.6768 -1.7490 -1.2491
30 1 1.6768 -0.2075 -2.1392
31 1 3.1301 -0.7209 -1.2494
32 1 3.8626 -1.1622 0.4846
33 1 0.4437 -2.1650 1.1597
34 1 1.9647 -2.7028 0.4075
35 1 2.2103 -1.2190 3.8783
36 1 0.4954 -1.6087 3.5261
37 1 0.8194 -2.7355 5.6316
38 1 2.5002 -3.2036 5.2195
39 1 0.7719 -5.4586 7.7346
40 1 0.3080 -4.1282 2.0929
41 1 1.8951 -4.9233 2.2776
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397585197.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:52:06
Heat of formation + Delta-G solvation = -65.007679 kcal
Electronic energy + Delta-G solvation = -18438.534858 eV
Core-core repulsion = 15738.609087 eV
Total energy + Delta-G solvation = -2699.925770 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.47073 -37.36576 -34.59751 -33.08113 -30.76075 -28.22386 -27.63046 -27.46395
-26.69918 -24.13724 -22.71033 -20.04131 -19.47562 -18.83714 -16.48344 -16.41882
-15.48832 -15.06328 -14.89182 -14.41258 -14.09938 -13.70059 -13.67931 -12.87619
-12.43864 -12.39088 -12.21427 -12.09897 -11.82426 -11.72754 -11.38840 -11.10460
-11.08639 -10.92850 -10.82517 -10.60301 -10.55128 -10.23010 -10.15072 -9.64278
-9.56209 -9.13665 -8.73372 -8.34941 -7.60683 -5.96503 -3.97991 3.35265
3.41459 3.44772 4.34377 4.49313 4.58280 4.69883 4.86492 4.97447
5.19610 5.35420 5.38513 5.46206 5.52306 5.57687 5.68197 5.77162
5.80518 5.82178 5.93379 5.95902 6.00654 6.07767 6.13819 6.26023
6.28249 6.33677 6.40625 6.65386 6.91899 7.18521 7.27236 7.51675
7.70455 7.80387 7.92172 7.96790 8.08405 8.49724 9.03279 9.65122
11.13747
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.049456 B = 0.005000 C = 0.004944
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 566.028619 B = 5598.119549 C = 5661.681306
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.102 4.102
3 C -0.135 4.135
4 C -0.148 4.148
5 C 0.119 3.881
6 H 0.097 0.903
7 O -0.546 6.546
8 C 0.012 3.988
9 N -0.506 5.506
10 C 0.029 3.971
11 C -0.091 4.091
12 C 0.040 3.960
13 H 0.029 0.971
14 C -0.506 4.506
15 H 0.057 0.943
16 C 0.060 3.940
17 N -0.892 5.892
18 Si 0.891 3.109
19 H -0.281 1.281
20 H -0.288 1.288
21 H -0.275 1.275
22 C 0.044 3.956
23 H 0.056 0.944
24 H 0.055 0.945
25 H 0.060 0.940
26 H 0.061 0.939
27 H 0.050 0.950
28 H 0.053 0.947
29 H 0.060 0.940
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.367 0.633
33 H 0.039 0.961
34 H 0.071 0.929
35 H 0.066 0.934
36 H 0.025 0.975
37 H 0.057 0.943
38 H 0.061 0.939
39 H 0.259 0.741
40 H 0.017 0.983
41 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.091 10.644 -13.663 17.320
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.103 4.103
3 C -0.192 4.192
4 C -0.205 4.205
5 C 0.060 3.940
6 H 0.115 0.885
7 O -0.351 6.351
8 C -0.117 4.117
9 N -0.230 5.230
10 C -0.098 4.098
11 C -0.130 4.130
12 C 0.021 3.979
13 H 0.047 0.953
14 C -0.544 4.544
15 H 0.075 0.925
16 C -0.141 4.141
17 N -0.531 5.531
18 Si 0.719 3.281
19 H -0.207 1.207
20 H -0.214 1.214
21 H -0.200 1.200
22 C -0.084 4.084
23 H 0.075 0.925
24 H 0.074 0.926
25 H 0.079 0.921
26 H 0.080 0.920
27 H 0.069 0.931
28 H 0.072 0.928
29 H 0.079 0.921
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.214 0.786
33 H 0.056 0.944
34 H 0.089 0.911
35 H 0.084 0.916
36 H 0.043 0.957
37 H 0.076 0.924
38 H 0.080 0.920
39 H 0.069 0.931
40 H 0.035 0.965
41 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 0.500 10.901 -12.941 16.928
hybrid contribution -0.486 -1.011 -0.139 1.131
sum 0.014 9.889 -13.080 16.397
Atomic orbital electron populations
1.21922 0.94252 1.02224 1.01778 1.21251 0.96201 0.96529 0.96298
1.21770 1.01648 0.94621 1.01203 1.21941 1.01037 1.00595 0.96925
1.22006 0.81237 0.94035 0.96747 0.88495 1.86596 1.18623 1.80507
1.49367 1.23109 0.98282 0.95268 0.95003 1.64772 1.54708 1.03236
1.00258 1.23344 0.96568 0.97279 0.92650 1.22391 1.01454 0.94306
0.94844 1.19486 0.96552 0.94087 0.87762 0.95332 1.21180 1.28099
1.10641 0.94503 0.92525 1.24977 0.95345 0.96719 0.97038 1.69968
1.39061 1.39348 1.04725 0.86614 0.79868 0.83172 0.78460 1.20690
1.21387 1.19968 1.23125 0.94753 0.90408 1.00074 0.92524 0.92622
0.92105 0.91978 0.93089 0.92803 0.92123 0.92539 0.92441 0.78603
0.94354 0.91098 0.91555 0.95687 0.92440 0.91982 0.93146 0.96511
0.91254
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.46 8.13 37.16 0.30 -1.16 16
2 C -0.10 -1.07 0.63 -154.51 -0.10 -1.17 16
3 C -0.14 -1.34 8.33 37.16 0.31 -1.03 16
4 C -0.15 -1.36 7.82 37.16 0.29 -1.07 16
5 C 0.12 1.61 2.02 -26.73 -0.05 1.55 16
6 H 0.10 1.45 6.52 -51.93 -0.34 1.11 16
7 O -0.55 -7.86 12.57 -35.23 -0.44 -8.30 16
8 C 0.01 0.19 3.94 -3.82 -0.02 0.17 16
9 N -0.51 -9.94 5.34 -230.44 -1.23 -11.17 16
10 C 0.03 0.59 5.09 -1.90 -0.01 0.58 16
11 C -0.09 -2.21 5.75 -24.87 -0.14 -2.35 16
12 C 0.04 1.02 2.87 -90.41 -0.26 0.76 16
13 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16
14 C -0.51 -14.16 8.38 -34.44 -0.29 -14.45 16
15 H 0.06 1.57 7.35 -52.49 -0.39 1.19 16
16 C 0.06 1.70 5.34 -17.82 -0.10 1.61 16
17 N -0.89 -26.02 12.63 55.43 0.70 -25.32 16
18 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16
19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
22 C 0.04 0.95 6.34 -2.75 -0.02 0.93 16
23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
25 H 0.06 0.65 6.32 -51.93 -0.33 0.32 16
26 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16
27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
29 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16
30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.06 0.49 6.78 -51.93 -0.35 0.14 16
32 H 0.37 4.20 7.34 45.56 0.33 4.54 16
33 H 0.04 0.58 5.84 -51.93 -0.30 0.28 16
34 H 0.07 1.01 6.71 -51.93 -0.35 0.67 16
35 H 0.07 1.29 7.56 -51.93 -0.39 0.89 16
36 H 0.02 0.47 8.01 -51.93 -0.42 0.06 16
37 H 0.06 1.44 8.12 -51.93 -0.42 1.02 16
38 H 0.06 1.63 7.86 -51.93 -0.41 1.22 16
39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
40 H 0.02 0.34 7.57 -51.93 -0.39 -0.06 16
41 H 0.07 1.55 7.40 -51.93 -0.38 1.17 16
LS Contribution 310.78 15.07 4.68 4.68
Total: -1.00 -29.61 310.78 -7.94 -37.55
By element:
Atomic # 1 Polarization: 8.06 SS G_CDS: -6.55 Total: 1.51 kcal
Atomic # 6 Polarization: -15.54 SS G_CDS: -0.08 Total: -15.62 kcal
Atomic # 7 Polarization: -35.96 SS G_CDS: -0.53 Total: -36.49 kcal
Atomic # 8 Polarization: -7.86 SS G_CDS: -0.44 Total: -8.30 kcal
Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal
Total LS contribution 4.68 Total: 4.68 kcal
Total: -29.61 -7.94 -37.55 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397585197.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.458 kcal
(2) G-P(sol) polarization free energy of solvation -29.613 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.550 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds