Wall clock time and date at job start Mon Mar 30 2020 03:52:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53000 * 109.47345 * 2 1
4 4 C 1.52996 * 109.47275 * 239.99771 * 2 1 3
5 5 C 1.53006 * 109.47177 * 119.99832 * 2 1 3
6 6 H 1.09002 * 109.46824 * 300.00279 * 5 2 1
7 7 O 1.42899 * 109.47421 * 180.02562 * 5 2 1
8 8 C 1.53000 * 109.46846 * 59.99862 * 5 2 1
9 9 N 1.46901 * 109.46769 * 185.00040 * 8 5 2
10 10 C 1.48534 * 111.00172 * 52.60936 * 9 8 5
11 11 C 1.54933 * 103.22824 * 159.71827 * 10 9 8
12 12 C 1.54594 * 102.92252 * 322.58255 * 11 10 9
13 13 H 1.09002 * 110.39476 * 263.00093 * 12 11 10
14 14 C 1.50703 * 110.30842 * 140.87414 * 12 11 10
15 15 H 1.07995 * 119.99785 * 244.28913 * 14 12 11
16 16 C 1.37877 * 119.99869 * 64.28221 * 14 12 11
17 17 N 1.31513 * 120.00121 * 0.02562 * 16 14 12
18 18 Si 1.86798 * 119.99986 * 179.97438 * 16 14 12
19 19 H 1.48496 * 109.47002 * 90.00152 * 18 16 14
20 20 H 1.48498 * 109.47116 * 210.00318 * 18 16 14
21 21 H 1.48506 * 109.46932 * 330.00516 * 18 16 14
22 22 C 1.47912 * 110.99681 * 170.00135 * 9 8 5
23 23 H 1.08990 * 109.47113 * 300.00243 * 1 2 3
24 24 H 1.08998 * 109.46717 * 60.00385 * 1 2 3
25 25 H 1.09001 * 109.46640 * 180.02562 * 1 2 3
26 26 H 1.09001 * 109.47624 * 179.97438 * 3 2 1
27 27 H 1.09002 * 109.46642 * 299.99939 * 3 2 1
28 28 H 1.09002 * 109.47069 * 59.99469 * 3 2 1
29 29 H 1.09001 * 109.47336 * 299.99634 * 4 2 1
30 30 H 1.08998 * 109.47375 * 60.00247 * 4 2 1
31 31 H 1.09001 * 109.47456 * 179.97438 * 4 2 1
32 32 H 0.96702 * 113.99557 * 300.00370 * 7 5 2
33 33 H 1.09002 * 109.47398 * 305.00335 * 8 5 2
34 34 H 1.09001 * 109.47194 * 65.00515 * 8 5 2
35 35 H 1.08997 * 110.66294 * 278.15766 * 10 9 8
36 36 H 1.09001 * 110.66815 * 41.27720 * 10 9 8
37 37 H 1.09002 * 110.72385 * 204.22928 * 11 10 9
38 38 H 1.09000 * 110.87522 * 81.01746 * 11 10 9
39 39 H 0.96996 * 120.00088 * 179.97438 * 17 16 14
40 40 H 1.08997 * 109.91505 * 333.51116 * 22 9 8
41 41 H 1.08999 * 109.91449 * 94.60846 * 22 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0401 -0.7213 -1.2492
5 6 2.0401 -0.7212 1.2493
6 1 1.6767 -0.2074 2.1393
7 8 3.4690 -0.7207 1.2497
8 6 1.5300 -2.1637 1.2493
9 7 1.9186 -2.8204 2.5046
10 6 1.4946 -2.0166 3.6794
11 6 1.4923 -3.0499 4.8338
12 6 0.9670 -4.3324 4.1489
13 1 -0.1031 -4.4449 4.3229
14 6 1.7092 -5.5401 4.6605
15 1 2.3262 -6.1190 3.9894
16 6 1.6004 -5.9058 5.9854
17 7 0.8487 -5.2011 6.8026
18 14 2.5198 -7.4032 6.6195
19 1 3.8631 -6.9922 7.1008
20 1 1.7585 -8.0142 7.7386
21 1 2.6685 -8.3937 5.5230
22 6 1.2460 -4.1299 2.6480
23 1 -0.3633 0.5138 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 3.1301 1.4425 0.0005
27 1 1.6767 1.9563 -0.8900
28 1 1.6767 1.9564 0.8900
29 1 1.6768 -1.7490 -1.2491
30 1 1.6768 -0.2075 -2.1392
31 1 3.1301 -0.7209 -1.2494
32 1 3.8626 -1.1622 0.4846
33 1 0.4437 -2.1650 1.1597
34 1 1.9647 -2.7028 0.4075
35 1 2.2103 -1.2190 3.8783
36 1 0.4954 -1.6087 3.5261
37 1 0.8194 -2.7355 5.6316
38 1 2.5002 -3.2036 5.2195
39 1 0.7719 -5.4586 7.7346
40 1 0.3080 -4.1282 2.0929
41 1 1.8951 -4.9233 2.2776
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397585197.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:52:06
Heat of formation + Delta-G solvation = -85.635570 kcal
Electronic energy + Delta-G solvation = -18439.429350 eV
Core-core repulsion = 15738.609087 eV
Total energy + Delta-G solvation = -2700.820263 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-40.65360 -38.87920 -35.58041 -35.04604 -32.51506 -30.02597 -28.83543 -28.21366
-27.76177 -26.06202 -24.06337 -21.60471 -21.29680 -19.89614 -18.58136 -17.55484
-16.71763 -16.52538 -16.32245 -16.03512 -15.36489 -14.98316 -14.72501 -14.46732
-14.02595 -13.67086 -13.35488 -13.11058 -13.05426 -12.89320 -12.75510 -12.70560
-12.58942 -12.44641 -12.22554 -12.06414 -11.89044 -11.67622 -11.59209 -11.31824
-11.20687 -10.84506 -10.51267 -10.45852 -9.17112 -8.12921 -6.21574 1.41465
1.42620 1.52611 2.44048 3.08480 3.19584 3.60519 3.69701 3.89382
4.01158 4.13508 4.22320 4.29554 4.41817 4.49076 4.52004 4.58254
4.73292 4.78623 4.83615 4.87441 4.92895 4.98847 5.04650 5.05559
5.11074 5.16838 5.22689 5.31995 5.35902 5.48881 5.50464 5.55294
5.71752 5.84168 6.16768 6.30735 6.39669 6.86644 6.93896 7.45134
8.96914
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.049456 B = 0.005000 C = 0.004944
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 566.028619 B = 5598.119549 C = 5661.681306
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.094 4.094
3 C -0.133 4.133
4 C -0.147 4.147
5 C 0.124 3.876
6 H 0.081 0.919
7 O -0.563 6.563
8 C 0.013 3.987
9 N -0.516 5.516
10 C 0.046 3.954
11 C -0.085 4.085
12 C 0.031 3.969
13 H 0.000 1.000
14 C -0.525 4.525
15 H 0.053 0.947
16 C 0.011 3.989
17 N -0.922 5.922
18 Si 0.956 3.044
19 H -0.277 1.277
20 H -0.283 1.283
21 H -0.266 1.266
22 C 0.055 3.945
23 H 0.051 0.949
24 H 0.071 0.929
25 H 0.054 0.946
26 H 0.057 0.943
27 H 0.067 0.933
28 H 0.046 0.954
29 H 0.057 0.943
30 H 0.069 0.931
31 H 0.063 0.937
32 H 0.379 0.621
33 H 0.045 0.955
34 H 0.085 0.915
35 H 0.075 0.925
36 H 0.039 0.961
37 H 0.038 0.962
38 H 0.034 0.966
39 H 0.260 0.740
40 H 0.032 0.968
41 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.502 11.066 -15.408 18.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.095 4.095
3 C -0.190 4.190
4 C -0.204 4.204
5 C 0.065 3.935
6 H 0.099 0.901
7 O -0.370 6.370
8 C -0.115 4.115
9 N -0.240 5.240
10 C -0.082 4.082
11 C -0.124 4.124
12 C 0.012 3.988
13 H 0.018 0.982
14 C -0.564 4.564
15 H 0.072 0.928
16 C -0.188 4.188
17 N -0.561 5.561
18 Si 0.781 3.219
19 H -0.203 1.203
20 H -0.208 1.208
21 H -0.191 1.191
22 C -0.072 4.072
23 H 0.070 0.930
24 H 0.090 0.910
25 H 0.073 0.927
26 H 0.076 0.924
27 H 0.086 0.914
28 H 0.066 0.934
29 H 0.076 0.924
30 H 0.088 0.912
31 H 0.082 0.918
32 H 0.228 0.772
33 H 0.063 0.937
34 H 0.104 0.896
35 H 0.093 0.907
36 H 0.057 0.943
37 H 0.057 0.943
38 H 0.053 0.947
39 H 0.069 0.931
40 H 0.050 0.950
41 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 0.916 11.326 -14.711 18.588
hybrid contribution -0.626 -1.119 0.386 1.339
sum 0.290 10.207 -14.325 17.592
Atomic orbital electron populations
1.21935 0.93863 1.02031 1.02409 1.21168 0.96412 0.96637 0.95317
1.21752 1.01333 0.94213 1.01729 1.21943 1.01522 1.00334 0.96610
1.21930 0.80968 0.92803 0.97805 0.90088 1.86566 1.19095 1.80805
1.50494 1.23231 0.98922 0.96304 0.93024 1.64718 1.54852 1.02600
1.01828 1.23147 0.97704 0.96147 0.91170 1.22166 0.99030 0.95372
0.95788 1.19476 0.94541 0.94052 0.90735 0.98151 1.21519 1.28328
1.11588 0.94924 0.92834 1.25766 0.96154 0.99579 0.97274 1.70087
1.40226 1.40857 1.04950 0.85591 0.78527 0.79766 0.77997 1.20316
1.20849 1.19087 1.22867 0.95492 0.91593 0.97294 0.93004 0.90971
0.92672 0.92440 0.91439 0.93434 0.92417 0.91173 0.91766 0.77164
0.93692 0.89649 0.90667 0.94262 0.94282 0.94738 0.93091 0.94991
0.91965
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.57 8.13 71.98 0.59 -1.98 16
2 C -0.09 -1.74 0.63 -52.18 -0.03 -1.78 16
3 C -0.13 -2.31 8.33 71.98 0.60 -1.71 16
4 C -0.15 -2.24 7.82 71.98 0.56 -1.68 16
5 C 0.12 3.11 2.02 30.60 0.06 3.17 16
6 H 0.08 2.30 6.52 -2.39 -0.02 2.28 16
7 O -0.56 -15.14 12.57 -148.98 -1.87 -17.01 16
8 C 0.01 0.38 3.94 86.30 0.34 0.72 16
9 N -0.52 -19.72 5.34 -882.99 -4.72 -24.44 16
10 C 0.05 1.82 5.09 86.65 0.44 2.26 16
11 C -0.08 -4.21 5.75 31.80 0.18 -4.03 16
12 C 0.03 1.62 2.87 -10.66 -0.03 1.59 16
13 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16
14 C -0.53 -29.92 8.38 25.60 0.21 -29.71 16
15 H 0.05 3.01 7.35 -2.91 -0.02 2.98 16
16 C 0.01 0.61 5.34 84.65 0.45 1.07 16
17 N -0.92 -54.89 12.63 21.45 0.27 -54.62 16
18 Si 0.96 44.78 29.54 68.60 2.03 46.80 16
19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16
21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
22 C 0.06 2.38 6.34 86.44 0.55 2.93 16
23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
25 H 0.05 1.04 6.32 -2.39 -0.02 1.02 16
26 H 0.06 1.06 7.68 -2.39 -0.02 1.04 16
27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16
29 H 0.06 0.92 6.54 -2.39 -0.02 0.91 16
30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.06 0.89 6.78 -2.39 -0.02 0.88 16
32 H 0.38 7.84 7.34 -74.06 -0.54 7.30 16
33 H 0.05 1.26 5.84 -2.39 -0.01 1.25 16
34 H 0.09 2.22 6.71 -2.39 -0.02 2.20 16
35 H 0.07 2.86 7.56 -2.39 -0.02 2.85 16
36 H 0.04 1.45 8.01 -2.39 -0.02 1.43 16
37 H 0.04 2.02 8.12 -2.39 -0.02 2.00 16
38 H 0.03 1.85 7.86 -2.39 -0.02 1.84 16
39 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16
40 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16
41 H 0.06 2.75 7.40 -2.39 -0.02 2.74 16
Total: -1.00 -63.58 310.78 0.08 -63.50
By element:
Atomic # 1 Polarization: 14.47 SS G_CDS: 0.45 Total: 14.92 kcal
Atomic # 6 Polarization: -33.08 SS G_CDS: 3.92 Total: -29.15 kcal
Atomic # 7 Polarization: -74.62 SS G_CDS: -4.45 Total: -79.07 kcal
Atomic # 8 Polarization: -15.14 SS G_CDS: -1.87 Total: -17.01 kcal
Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal
Total: -63.58 0.08 -63.50 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397585197.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.133 kcal
(2) G-P(sol) polarization free energy of solvation -63.578 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.712 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.502 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.636 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds