Wall clock time and date at job start Mon Mar 30 2020 03:35:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.46819 * 2 1
4 4 C 1.53000 * 109.46963 * 119.99502 * 2 1 3
5 5 C 1.53000 * 109.47509 * 305.00325 * 4 2 1
6 6 O 1.42901 * 109.46934 * 65.00614 * 4 2 1
7 7 C 1.53008 * 109.47157 * 185.00055 * 4 2 1
8 8 N 1.46900 * 109.47281 * 174.61731 * 7 4 2
9 9 C 1.48556 * 110.99986 * 176.83509 * 8 7 4
10 10 C 1.54378 * 104.59375 * 200.96327 * 9 8 7
11 11 C 1.54262 * 105.06197 * 23.84966 * 10 9 8
12 12 H 1.09002 * 110.32453 * 241.00395 * 11 10 9
13 13 C 1.50700 * 110.32718 * 118.90029 * 11 10 9
14 14 H 1.07998 * 119.99785 * 241.45968 * 13 11 10
15 15 C 1.37876 * 120.00092 * 61.45060 * 13 11 10
16 16 N 1.31514 * 119.99860 * 0.02562 * 15 13 11
17 17 Si 1.86790 * 120.00245 * 180.02562 * 15 13 11
18 18 H 1.48507 * 109.47268 * 359.97438 * 17 15 13
19 19 H 1.48500 * 109.47402 * 240.00282 * 17 15 13
20 20 H 1.48499 * 109.47401 * 119.99841 * 17 15 13
21 21 C 1.48565 * 110.99926 * 61.41276 * 8 7 4
22 22 H 1.09000 * 109.47218 * 300.00201 * 1 2 3
23 23 H 1.08999 * 109.46996 * 59.99993 * 1 2 3
24 24 H 1.08998 * 109.47245 * 180.02562 * 1 2 3
25 25 H 1.08996 * 109.47641 * 239.99610 * 2 1 3
26 26 H 1.08999 * 109.47342 * 299.99795 * 3 2 1
27 27 H 1.09000 * 109.47390 * 59.99904 * 3 2 1
28 28 H 1.09005 * 109.47305 * 179.97438 * 3 2 1
29 29 H 1.09007 * 109.46861 * 304.37198 * 5 4 2
30 30 H 1.08997 * 109.46848 * 64.37263 * 5 4 2
31 31 H 1.08997 * 109.47318 * 184.37591 * 5 4 2
32 32 H 0.96697 * 114.00117 * 59.99832 * 6 4 2
33 33 H 1.08998 * 109.46642 * 54.62040 * 7 4 2
34 34 H 1.09000 * 109.46772 * 294.61973 * 7 4 2
35 35 H 1.08997 * 110.41737 * 82.18042 * 9 8 7
36 36 H 1.09009 * 110.41023 * 319.73600 * 9 8 7
37 37 H 1.09004 * 110.32142 * 264.95864 * 10 9 8
38 38 H 1.09000 * 110.41303 * 142.79102 * 10 9 8
39 39 H 0.97003 * 120.00103 * 359.97438 * 16 15 13
40 40 H 1.09002 * 110.40864 * 40.26015 * 21 8 7
41 41 H 1.09000 * 110.40716 * 277.82471 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7211 1.2493
5 6 1.4298 -0.0761 2.4954
6 8 1.6620 -2.0981 1.1921
7 6 3.5648 -0.6132 1.3138
8 7 4.0438 -1.1922 2.5761
9 6 5.5278 -1.1738 2.6409
10 6 5.8846 -2.2479 3.6909
11 6 4.6770 -3.2075 3.7089
12 1 4.2194 -3.2217 4.6981
13 6 5.1061 -4.5965 3.3119
14 1 4.6866 -5.0603 2.4314
15 6 6.0344 -5.2752 4.0726
16 7 6.5450 -4.7105 5.1451
17 14 6.5669 -6.9965 3.5802
18 1 5.8494 -7.4022 2.3448
19 1 6.2433 -7.9468 4.6744
20 1 8.0306 -7.0094 3.3300
21 6 3.6921 -2.6326 2.6684
22 1 -0.3634 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 1.8934 -0.5139 -0.8899
26 1 1.6766 1.9563 -0.8900
27 1 1.6765 1.9564 0.8900
28 1 3.1299 1.4426 0.0005
29 1 1.6531 0.9908 2.4985
30 1 0.3496 -0.2213 2.4877
31 1 1.8522 -0.5383 3.3876
32 1 2.0142 -2.5711 0.4258
33 1 3.8573 0.4355 1.2610
34 1 4.0032 -1.1553 0.4759
35 1 5.8823 -0.1947 2.9631
36 1 5.9540 -1.4333 1.6717
37 1 6.0186 -1.7896 4.6708
38 1 6.7881 -2.7819 3.3966
39 1 6.2688 -3.8164 5.4006
40 1 3.8309 -3.1204 1.7035
41 1 2.6643 -2.7517 3.0112
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397586495.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:03
Heat of formation + Delta-G solvation = -63.810266 kcal
Electronic energy + Delta-G solvation = -18780.694625 eV
Core-core repulsion = 16080.820779 eV
Total energy + Delta-G solvation = -2699.873846 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.56583 -37.28784 -34.28644 -33.39548 -30.79223 -28.81564 -27.99094 -27.46099
-25.52481 -23.92321 -22.43129 -20.22548 -19.63494 -19.10147 -16.91422 -16.37156
-15.57064 -15.23603 -14.64639 -14.21085 -13.90759 -13.73727 -13.25622 -12.98536
-12.72623 -12.42807 -12.09908 -11.97276 -11.73631 -11.54452 -11.36087 -11.27847
-11.15469 -10.88143 -10.83679 -10.49751 -10.34292 -10.23654 -10.09091 -9.81091
-9.47427 -9.12989 -8.39437 -8.26106 -7.81128 -6.28068 -3.99444 3.45739
3.49498 3.62693 4.33007 4.48786 4.57809 4.78651 4.94765 5.00470
5.25442 5.31651 5.43997 5.52256 5.54004 5.69294 5.72574 5.78317
5.85616 5.93222 5.94672 6.01011 6.03500 6.12298 6.20370 6.26855
6.30296 6.44969 6.54243 6.66694 6.90197 7.01202 7.09345 7.37728
7.54557 7.69911 7.79321 7.89413 8.35853 8.50320 8.96026 9.72869
11.10817
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.040276 B = 0.005824 C = 0.005472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 695.039609 B = 4806.419228 C = 5115.470031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.120 4.120
3 C -0.150 4.150
4 C 0.141 3.859
5 C -0.132 4.132
6 O -0.549 6.549
7 C 0.018 3.982
8 N -0.510 5.510
9 C 0.035 3.965
10 C -0.112 4.112
11 C 0.027 3.973
12 H 0.021 0.979
13 C -0.591 4.591
14 H 0.047 0.953
15 C 0.018 3.982
16 N -0.915 5.915
17 Si 1.071 2.929
18 H -0.291 1.291
19 H -0.287 1.287
20 H -0.289 1.289
21 C 0.060 3.940
22 H 0.058 0.942
23 H 0.048 0.952
24 H 0.060 0.940
25 H 0.066 0.934
26 H 0.052 0.948
27 H 0.060 0.940
28 H 0.058 0.942
29 H 0.063 0.937
30 H 0.054 0.946
31 H 0.078 0.922
32 H 0.369 0.631
33 H 0.077 0.923
34 H 0.028 0.972
35 H 0.061 0.939
36 H 0.030 0.970
37 H 0.042 0.958
38 H 0.066 0.934
39 H 0.273 0.727
40 H 0.030 0.970
41 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.361 10.715 -10.069 16.914
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.139 4.139
3 C -0.207 4.207
4 C 0.100 3.900
5 C -0.189 4.189
6 O -0.354 6.354
7 C -0.112 4.112
8 N -0.234 5.234
9 C -0.092 4.092
10 C -0.151 4.151
11 C 0.008 3.992
12 H 0.039 0.961
13 C -0.630 4.630
14 H 0.066 0.934
15 C -0.186 4.186
16 N -0.551 5.551
17 Si 0.900 3.100
18 H -0.217 1.217
19 H -0.214 1.214
20 H -0.215 1.215
21 C -0.067 4.067
22 H 0.077 0.923
23 H 0.067 0.933
24 H 0.079 0.921
25 H 0.085 0.915
26 H 0.071 0.929
27 H 0.079 0.921
28 H 0.077 0.923
29 H 0.082 0.918
30 H 0.073 0.927
31 H 0.097 0.903
32 H 0.216 0.784
33 H 0.095 0.905
34 H 0.046 0.954
35 H 0.079 0.921
36 H 0.049 0.951
37 H 0.061 0.939
38 H 0.085 0.915
39 H 0.085 0.915
40 H 0.048 0.952
41 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -7.934 9.936 -8.653 15.380
hybrid contribution -0.201 0.736 -1.816 1.969
sum -8.135 10.672 -10.468 17.019
Atomic orbital electron populations
1.21800 0.94644 1.02228 1.01311 1.21755 0.96852 0.96966 0.98346
1.21965 1.01261 0.95637 1.01857 1.21164 0.92205 0.81859 0.94760
1.21712 1.00029 0.99568 0.97546 1.86656 1.76931 1.21821 1.50025
1.22981 0.95562 1.00415 0.92215 1.65425 1.09697 1.17845 1.30389
1.23087 0.88245 0.99224 0.98684 1.22493 1.01289 0.95401 0.95934
1.19608 0.90886 0.94163 0.94540 0.96060 1.22072 1.27400 1.00186
1.13320 0.93448 1.25746 0.94176 1.04645 0.94068 1.70704 1.42984
1.17279 1.24146 0.83514 0.76041 0.75044 0.75364 1.21684 1.21388
1.21509 1.23161 0.99943 0.84870 0.98676 0.92286 0.93308 0.92134
0.91515 0.92867 0.92066 0.92262 0.91830 0.92719 0.90318 0.78413
0.90481 0.95406 0.92103 0.95136 0.93902 0.91521 0.91518 0.95183
0.90628
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.46 8.60 37.16 0.32 -1.14 16
2 C -0.12 -1.30 2.49 -90.62 -0.23 -1.53 16
3 C -0.15 -1.45 8.47 37.16 0.31 -1.13 16
4 C 0.14 1.91 0.51 -90.62 -0.05 1.87 16
5 C -0.13 -1.82 7.92 37.16 0.29 -1.53 16
6 O -0.55 -8.31 9.36 -35.23 -0.33 -8.64 16
7 C 0.02 0.27 3.90 -3.82 -0.01 0.25 16
8 N -0.51 -9.67 4.37 -229.97 -1.00 -10.67 16
9 C 0.04 0.70 6.49 -2.19 -0.01 0.69 16
10 C -0.11 -2.67 5.03 -25.35 -0.13 -2.80 16
11 C 0.03 0.70 2.65 -90.39 -0.24 0.46 16
12 H 0.02 0.60 8.04 -51.93 -0.42 0.18 16
13 C -0.59 -16.75 8.37 -34.44 -0.29 -17.04 16
14 H 0.05 1.35 7.58 -52.49 -0.40 0.95 16
15 C 0.02 0.51 5.09 -17.82 -0.09 0.42 16
16 N -0.91 -27.69 13.27 55.43 0.74 -26.95 16
17 Si 1.07 25.53 29.90 -169.99 -5.08 20.45 16
18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
21 C 0.06 1.32 4.27 -2.18 -0.01 1.31 16
22 H 0.06 0.60 6.45 -51.93 -0.33 0.27 16
23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
24 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16
25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
27 H 0.06 0.58 6.47 -51.93 -0.34 0.25 16
28 H 0.06 0.58 6.23 -51.93 -0.32 0.26 16
29 H 0.06 0.77 6.37 -51.93 -0.33 0.44 16
30 H 0.05 0.71 6.61 -51.93 -0.34 0.37 16
31 H 0.08 1.31 7.23 -51.93 -0.38 0.93 16
32 H 0.37 4.73 8.84 45.56 0.40 5.13 16
33 H 0.08 1.07 6.04 -51.93 -0.31 0.76 16
34 H 0.03 0.43 7.98 -51.93 -0.41 0.02 16
35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
36 H 0.03 0.60 7.93 -51.92 -0.41 0.19 16
37 H 0.04 1.01 7.92 -51.93 -0.41 0.60 16
38 H 0.07 1.74 7.23 -51.93 -0.38 1.36 16
39 H 0.27 8.23 6.00 -40.82 -0.25 7.98 16
40 H 0.03 0.67 7.09 -51.93 -0.37 0.30 16
41 H 0.08 1.68 6.86 -51.93 -0.36 1.33 16
LS Contribution 303.28 15.07 4.57 4.57
Total: -1.00 -30.28 303.28 -7.48 -37.77
By element:
Atomic # 1 Polarization: 9.90 SS G_CDS: -6.24 Total: 3.66 kcal
Atomic # 6 Polarization: -20.05 SS G_CDS: -0.13 Total: -20.17 kcal
Atomic # 7 Polarization: -37.35 SS G_CDS: -0.27 Total: -37.62 kcal
Atomic # 8 Polarization: -8.31 SS G_CDS: -0.33 Total: -8.64 kcal
Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal
Total LS contribution 4.57 Total: 4.57 kcal
Total: -30.28 -7.48 -37.77 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397586495.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.044 kcal
(2) G-P(sol) polarization free energy of solvation -30.282 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.810 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds