Wall clock time and date at job start Mon Mar 30 2020 03:35:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.46819 * 2 1
4 4 C 1.53000 * 109.46963 * 119.99502 * 2 1 3
5 5 C 1.53000 * 109.47509 * 305.00325 * 4 2 1
6 6 O 1.42901 * 109.46934 * 65.00614 * 4 2 1
7 7 C 1.53008 * 109.47157 * 185.00055 * 4 2 1
8 8 N 1.46900 * 109.47281 * 174.61731 * 7 4 2
9 9 C 1.48556 * 110.99986 * 176.83509 * 8 7 4
10 10 C 1.54378 * 104.59375 * 200.96327 * 9 8 7
11 11 C 1.54262 * 105.06197 * 23.84966 * 10 9 8
12 12 H 1.09002 * 110.32453 * 241.00395 * 11 10 9
13 13 C 1.50700 * 110.32718 * 118.90029 * 11 10 9
14 14 H 1.07998 * 119.99785 * 241.45968 * 13 11 10
15 15 C 1.37876 * 120.00092 * 61.45060 * 13 11 10
16 16 N 1.31514 * 119.99860 * 0.02562 * 15 13 11
17 17 Si 1.86790 * 120.00245 * 180.02562 * 15 13 11
18 18 H 1.48507 * 109.47268 * 359.97438 * 17 15 13
19 19 H 1.48500 * 109.47402 * 240.00282 * 17 15 13
20 20 H 1.48499 * 109.47401 * 119.99841 * 17 15 13
21 21 C 1.48565 * 110.99926 * 61.41276 * 8 7 4
22 22 H 1.09000 * 109.47218 * 300.00201 * 1 2 3
23 23 H 1.08999 * 109.46996 * 59.99993 * 1 2 3
24 24 H 1.08998 * 109.47245 * 180.02562 * 1 2 3
25 25 H 1.08996 * 109.47641 * 239.99610 * 2 1 3
26 26 H 1.08999 * 109.47342 * 299.99795 * 3 2 1
27 27 H 1.09000 * 109.47390 * 59.99904 * 3 2 1
28 28 H 1.09005 * 109.47305 * 179.97438 * 3 2 1
29 29 H 1.09007 * 109.46861 * 304.37198 * 5 4 2
30 30 H 1.08997 * 109.46848 * 64.37263 * 5 4 2
31 31 H 1.08997 * 109.47318 * 184.37591 * 5 4 2
32 32 H 0.96697 * 114.00117 * 59.99832 * 6 4 2
33 33 H 1.08998 * 109.46642 * 54.62040 * 7 4 2
34 34 H 1.09000 * 109.46772 * 294.61973 * 7 4 2
35 35 H 1.08997 * 110.41737 * 82.18042 * 9 8 7
36 36 H 1.09009 * 110.41023 * 319.73600 * 9 8 7
37 37 H 1.09004 * 110.32142 * 264.95864 * 10 9 8
38 38 H 1.09000 * 110.41303 * 142.79102 * 10 9 8
39 39 H 0.97003 * 120.00103 * 359.97438 * 16 15 13
40 40 H 1.09002 * 110.40864 * 40.26015 * 21 8 7
41 41 H 1.09000 * 110.40716 * 277.82471 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7211 1.2493
5 6 1.4298 -0.0761 2.4954
6 8 1.6620 -2.0981 1.1921
7 6 3.5648 -0.6132 1.3138
8 7 4.0438 -1.1922 2.5761
9 6 5.5278 -1.1738 2.6409
10 6 5.8846 -2.2479 3.6909
11 6 4.6770 -3.2075 3.7089
12 1 4.2194 -3.2217 4.6981
13 6 5.1061 -4.5965 3.3119
14 1 4.6866 -5.0603 2.4314
15 6 6.0344 -5.2752 4.0726
16 7 6.5450 -4.7105 5.1451
17 14 6.5669 -6.9965 3.5802
18 1 5.8494 -7.4022 2.3448
19 1 6.2433 -7.9468 4.6744
20 1 8.0306 -7.0094 3.3300
21 6 3.6921 -2.6326 2.6684
22 1 -0.3634 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 1.8934 -0.5139 -0.8899
26 1 1.6766 1.9563 -0.8900
27 1 1.6765 1.9564 0.8900
28 1 3.1299 1.4426 0.0005
29 1 1.6531 0.9908 2.4985
30 1 0.3496 -0.2213 2.4877
31 1 1.8522 -0.5383 3.3876
32 1 2.0142 -2.5711 0.4258
33 1 3.8573 0.4355 1.2610
34 1 4.0032 -1.1553 0.4759
35 1 5.8823 -0.1947 2.9631
36 1 5.9540 -1.4333 1.6717
37 1 6.0186 -1.7896 4.6708
38 1 6.7881 -2.7819 3.3966
39 1 6.2688 -3.8164 5.4006
40 1 3.8309 -3.1204 1.7035
41 1 2.6643 -2.7517 3.0112
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397586495.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:02
Heat of formation + Delta-G solvation = -84.396786 kcal
Electronic energy + Delta-G solvation = -18781.587324 eV
Core-core repulsion = 16080.820779 eV
Total energy + Delta-G solvation = -2700.766545 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.83819 -38.83439 -35.36620 -35.30183 -32.39862 -30.25887 -29.67970 -28.39415
-26.86941 -25.86700 -23.62882 -21.81449 -21.50278 -20.22729 -18.94140 -17.56616
-17.06158 -16.36503 -16.10480 -15.64491 -15.59011 -15.24927 -14.85369 -14.08627
-13.93423 -13.70711 -13.57255 -13.33480 -13.03503 -12.92396 -12.77658 -12.74453
-12.41537 -12.29489 -12.13326 -11.97750 -11.91664 -11.77864 -11.69458 -11.35234
-11.17428 -10.56818 -10.43514 -10.40963 -9.37949 -8.58647 -6.31274 1.51835
1.61131 1.77094 2.56964 3.08360 3.21334 3.37925 3.76666 3.87701
3.96530 4.02629 4.21143 4.27041 4.37345 4.38467 4.51242 4.60360
4.68148 4.77539 4.79753 4.86422 4.94120 5.01121 5.04480 5.06108
5.09621 5.16376 5.17037 5.21452 5.32699 5.40187 5.46580 5.60989
5.68356 5.78140 6.17577 6.20169 6.26963 6.68251 6.85401 7.49843
8.80209
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.040276 B = 0.005824 C = 0.005472
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 695.039609 B = 4806.419228 C = 5115.470031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.112 4.112
3 C -0.149 4.149
4 C 0.141 3.859
5 C -0.130 4.130
6 O -0.569 6.569
7 C 0.017 3.983
8 N -0.510 5.510
9 C 0.045 3.955
10 C -0.105 4.105
11 C 0.014 3.986
12 H -0.015 1.015
13 C -0.604 4.604
14 H 0.043 0.957
15 C -0.031 4.031
16 N -0.937 5.937
17 Si 1.118 2.882
18 H -0.273 1.273
19 H -0.281 1.281
20 H -0.279 1.279
21 C 0.083 3.917
22 H 0.058 0.942
23 H 0.065 0.935
24 H 0.048 0.952
25 H 0.072 0.928
26 H 0.068 0.932
27 H 0.062 0.938
28 H 0.058 0.942
29 H 0.082 0.918
30 H 0.059 0.941
31 H 0.045 0.955
32 H 0.377 0.623
33 H 0.099 0.901
34 H 0.030 0.970
35 H 0.088 0.912
36 H 0.036 0.964
37 H 0.035 0.965
38 H 0.038 0.962
39 H 0.262 0.738
40 H 0.026 0.974
41 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.772 11.751 -12.029 18.967
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.131 4.131
3 C -0.206 4.206
4 C 0.100 3.900
5 C -0.187 4.187
6 O -0.376 6.376
7 C -0.112 4.112
8 N -0.234 5.234
9 C -0.083 4.083
10 C -0.144 4.144
11 C -0.005 4.005
12 H 0.004 0.996
13 C -0.642 4.642
14 H 0.061 0.939
15 C -0.230 4.230
16 N -0.575 5.575
17 Si 0.940 3.060
18 H -0.198 1.198
19 H -0.207 1.207
20 H -0.205 1.205
21 C -0.044 4.044
22 H 0.077 0.923
23 H 0.084 0.916
24 H 0.067 0.933
25 H 0.091 0.909
26 H 0.087 0.913
27 H 0.081 0.919
28 H 0.077 0.923
29 H 0.101 0.899
30 H 0.078 0.922
31 H 0.064 0.936
32 H 0.225 0.775
33 H 0.117 0.883
34 H 0.048 0.952
35 H 0.106 0.894
36 H 0.055 0.945
37 H 0.053 0.947
38 H 0.057 0.943
39 H 0.072 0.928
40 H 0.044 0.956
41 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -8.360 10.997 -10.628 17.430
hybrid contribution -0.120 0.453 -1.187 1.277
sum -8.481 11.451 -11.815 18.511
Atomic orbital electron populations
1.21779 0.94108 1.01736 1.02134 1.21676 0.97204 0.97497 0.96763
1.21966 1.01205 0.94661 1.02796 1.21257 0.91042 0.81570 0.96123
1.21702 1.00208 1.00478 0.96284 1.86630 1.77161 1.22941 1.50875
1.23147 0.96731 1.01205 0.90104 1.65399 1.09064 1.15689 1.33220
1.23016 0.88851 0.98976 0.97474 1.22271 0.99114 0.95967 0.97004
1.19644 0.92671 0.94300 0.93884 0.99643 1.22387 1.27240 1.01499
1.13075 0.93904 1.27200 0.94140 1.08146 0.93484 1.70822 1.44150
1.17056 1.25457 0.82914 0.76354 0.70783 0.75901 1.19830 1.20667
1.20484 1.22778 0.98203 0.86597 0.96842 0.92341 0.91616 0.93301
0.90911 0.91281 0.91868 0.92304 0.89919 0.92193 0.93552 0.77458
0.88276 0.95166 0.89390 0.94536 0.94653 0.94323 0.92803 0.95605
0.91419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.50 8.60 71.98 0.62 -1.88 16
2 C -0.11 -2.11 2.49 -10.79 -0.03 -2.13 16
3 C -0.15 -2.34 8.47 71.98 0.61 -1.73 16
4 C 0.14 3.55 0.51 -10.79 -0.01 3.54 16
5 C -0.13 -3.41 7.92 71.98 0.57 -2.84 16
6 O -0.57 -16.71 9.36 -148.98 -1.40 -18.11 16
7 C 0.02 0.47 3.90 86.31 0.34 0.80 16
8 N -0.51 -18.81 4.37 -881.48 -3.85 -22.66 16
9 C 0.04 1.71 6.49 86.45 0.56 2.27 16
10 C -0.10 -5.09 5.03 31.49 0.16 -4.93 16
11 C 0.01 0.75 2.65 -10.65 -0.03 0.72 16
12 H -0.01 -0.87 8.04 -2.39 -0.02 -0.89 16
13 C -0.60 -34.94 8.37 25.60 0.21 -34.72 16
14 H 0.04 2.46 7.58 -2.91 -0.02 2.44 16
15 C -0.03 -1.83 5.09 84.65 0.43 -1.40 16
16 N -0.94 -58.18 13.27 21.45 0.28 -57.90 16
17 Si 1.12 51.34 29.90 68.60 2.05 53.39 16
18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16
19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
21 C 0.08 3.66 4.27 86.45 0.37 4.03 16
22 H 0.06 1.04 6.45 -2.39 -0.02 1.03 16
23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
24 H 0.05 0.98 7.82 -2.39 -0.02 0.97 16
25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
26 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
27 H 0.06 0.97 6.47 -2.39 -0.02 0.96 16
28 H 0.06 0.93 6.23 -2.38 -0.01 0.92 16
29 H 0.08 1.81 6.37 -2.38 -0.02 1.80 16
30 H 0.06 1.49 6.61 -2.39 -0.02 1.47 16
31 H 0.05 1.52 7.23 -2.39 -0.02 1.50 16
32 H 0.38 9.29 8.84 -74.06 -0.65 8.63 16
33 H 0.10 2.40 6.04 -2.39 -0.01 2.39 16
34 H 0.03 0.86 7.98 -2.39 -0.02 0.84 16
35 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16
36 H 0.04 1.36 7.93 -2.38 -0.02 1.34 16
37 H 0.03 1.71 7.92 -2.39 -0.02 1.69 16
38 H 0.04 2.06 7.23 -2.39 -0.02 2.04 16
39 H 0.26 16.41 6.00 -92.71 -0.56 15.85 16
40 H 0.03 1.14 7.09 -2.39 -0.02 1.13 16
41 H 0.07 3.07 6.86 -2.39 -0.02 3.06 16
Total: -1.00 -66.24 303.28 1.46 -64.78
By element:
Atomic # 1 Polarization: 18.20 SS G_CDS: 0.56 Total: 18.76 kcal
Atomic # 6 Polarization: -42.08 SS G_CDS: 3.81 Total: -38.27 kcal
Atomic # 7 Polarization: -76.99 SS G_CDS: -3.56 Total: -80.55 kcal
Atomic # 8 Polarization: -16.71 SS G_CDS: -1.40 Total: -18.11 kcal
Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal
Total: -66.24 1.46 -64.78 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397586495.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.619 kcal
(2) G-P(sol) polarization free energy of solvation -66.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.854 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.397 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds