Wall clock time and date at job start Mon Mar 30 2020 03:45:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.46863 * 2 1
4 4 C 1.53009 * 109.46963 * 240.00804 * 2 1 3
5 5 C 1.52991 * 109.47502 * 63.20268 * 4 2 1
6 6 C 1.52999 * 109.46580 * 303.20288 * 4 2 1
7 7 O 1.42908 * 109.47202 * 295.63082 * 6 4 2
8 8 N 1.46901 * 109.46764 * 183.20522 * 4 2 1
9 9 C 1.46904 * 110.99410 * 176.53047 * 8 4 2
10 10 C 1.53008 * 109.46682 * 180.22567 * 9 8 4
11 11 C 1.50699 * 115.55033 * 65.32949 * 10 9 8
12 12 H 1.08000 * 119.99939 * 265.37248 * 11 10 9
13 13 C 1.37878 * 119.99826 * 85.36803 * 11 10 9
14 14 N 1.31512 * 120.00138 * 359.81267 * 13 11 10
15 15 Si 1.86802 * 119.99926 * 179.80262 * 13 11 10
16 16 H 1.48504 * 109.46847 * 60.00563 * 15 13 11
17 17 H 1.48497 * 109.47034 * 180.02562 * 15 13 11
18 18 H 1.48496 * 109.47237 * 300.00825 * 15 13 11
19 19 C 1.52993 * 117.49643 * 279.65780 * 10 9 8
20 20 C 1.53004 * 117.49708 * 210.99888 * 10 9 8
21 21 H 1.09001 * 109.46932 * 305.24558 * 1 2 3
22 22 H 1.08994 * 109.47163 * 65.24336 * 1 2 3
23 23 H 1.09000 * 109.46654 * 185.24978 * 1 2 3
24 24 H 1.08998 * 109.47425 * 120.00348 * 2 1 3
25 25 H 1.09003 * 109.47009 * 60.00620 * 3 2 1
26 26 H 1.09004 * 109.46830 * 180.02562 * 3 2 1
27 27 H 1.08998 * 109.47383 * 300.00373 * 3 2 1
28 28 H 1.09002 * 109.47123 * 59.99904 * 5 4 2
29 29 H 1.08993 * 109.47351 * 180.02562 * 5 4 2
30 30 H 1.09009 * 109.47257 * 300.00506 * 5 4 2
31 31 H 1.08995 * 109.47519 * 55.63182 * 6 4 2
32 32 H 1.09001 * 109.47104 * 175.63679 * 6 4 2
33 33 H 0.96704 * 113.99812 * 180.02562 * 7 6 4
34 34 H 1.00898 * 110.99914 * 300.48518 * 8 4 2
35 35 H 1.08996 * 109.47638 * 300.22627 * 9 8 4
36 36 H 1.09001 * 109.46844 * 60.22964 * 9 8 4
37 37 H 0.97002 * 119.99898 * 185.03810 * 14 13 11
38 38 H 1.08997 * 117.50391 * 0.02562 * 19 10 9
39 39 H 1.09009 * 117.49642 * 145.02662 * 19 10 9
40 40 H 1.08998 * 117.49729 * 214.98316 * 20 10 9
41 41 H 1.08996 * 117.49688 * 359.97438 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7211 -1.2494
5 6 1.5969 0.0452 -2.4972
6 6 1.4652 -2.1384 -1.2904
7 8 1.9611 -2.8860 -0.1780
8 7 3.5070 -0.7885 -1.2113
9 6 4.0289 -1.5474 -2.3558
10 6 5.5561 -1.6005 -2.2786
11 6 6.1216 -2.3616 -1.1073
12 1 6.3958 -1.8369 -0.2040
13 6 6.2890 -3.7277 -1.1889
14 7 5.9516 -4.3671 -2.2875
15 14 6.9951 -4.6705 0.2610
16 1 6.1183 -4.4866 1.4453
17 1 7.0734 -6.1141 -0.0781
18 1 8.3553 -4.1600 0.5681
19 6 6.3310 -0.3742 -2.7649
20 6 6.3285 -1.6583 -3.5981
21 1 -0.3633 0.5931 0.8393
22 1 -0.3633 0.4303 -0.9332
23 1 -0.3633 -1.0234 0.0940
24 1 1.8934 -0.5139 0.8899
25 1 1.6767 1.9563 0.8901
26 1 3.1300 1.4425 -0.0005
27 1 1.6766 1.9564 -0.8899
28 1 2.0064 1.0550 -2.4680
29 1 1.9598 -0.4687 -3.3872
30 1 0.5084 0.0953 -2.5255
31 1 0.3774 -2.0910 -1.2403
32 1 1.7653 -2.6255 -2.2182
33 1 1.6374 -3.7965 -0.1403
34 1 3.9106 0.1355 -1.1757
35 1 3.6285 -2.5608 -2.3329
36 1 3.7287 -1.0589 -3.2828
37 1 6.0003 -5.3354 -2.3195
38 1 5.7530 0.4706 -3.1394
39 1 7.2503 -0.1182 -2.2379
40 1 7.2459 -2.2466 -3.6189
41 1 5.7487 -1.6589 -4.5210
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000398503991.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:08
Heat of formation + Delta-G solvation = -49.927230 kcal
Electronic energy + Delta-G solvation = -18969.475634 eV
Core-core repulsion = 16270.203802 eV
Total energy + Delta-G solvation = -2699.271833 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 241.178 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.39175 -38.23979 -36.55490 -34.19498 -33.74342 -30.35684 -28.39891 -27.58583
-26.91399 -25.98881 -23.08633 -22.76256 -20.81803 -19.19216 -18.16955 -18.06808
-16.98961 -16.48208 -16.04233 -15.85648 -15.34455 -15.01844 -14.66401 -14.34475
-13.81329 -13.62815 -13.48184 -13.25018 -13.14473 -12.85588 -12.74023 -12.71671
-12.52101 -12.33736 -12.16423 -12.00369 -11.73693 -11.37262 -11.11900 -11.03491
-10.79499 -10.63776 -10.28602 -9.85179 -8.83456 -7.98072 -6.04152 1.42926
1.45033 1.52007 2.51060 3.24940 3.31273 3.57935 3.70455 3.92476
3.98234 4.29534 4.38081 4.48403 4.51675 4.56933 4.61053 4.64262
4.69284 4.74873 4.78811 4.90460 4.92196 5.00359 5.06386 5.10352
5.15166 5.18980 5.22339 5.32617 5.40496 5.56968 5.66987 5.69682
5.81556 5.94157 6.48574 6.63846 6.85379 6.97223 7.06707 7.60112
9.09982
Molecular weight = 241.18amu
Principal moments of inertia in cm(-1)
A = 0.023521 B = 0.008380 C = 0.007276
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1190.128616 B = 3340.548232 C = 3847.162757
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.075 4.075
3 C -0.147 4.147
4 C 0.115 3.885
5 C -0.179 4.179
6 C 0.088 3.912
7 O -0.569 6.569
8 N -0.661 5.661
9 C 0.129 3.871
10 C 0.026 3.974
11 C -0.474 4.474
12 H 0.041 0.959
13 C 0.025 3.975
14 N -0.913 5.913
15 Si 0.942 3.058
16 H -0.279 1.279
17 H -0.286 1.286
18 H -0.277 1.277
19 C -0.192 4.192
20 C -0.163 4.163
21 H 0.064 0.936
22 H 0.068 0.932
23 H 0.052 0.948
24 H 0.053 0.947
25 H 0.063 0.937
26 H 0.044 0.956
27 H 0.067 0.933
28 H 0.071 0.929
29 H 0.043 0.957
30 H 0.082 0.918
31 H 0.068 0.932
32 H 0.021 0.979
33 H 0.378 0.622
34 H 0.332 0.668
35 H 0.042 0.958
36 H 0.004 0.996
37 H 0.254 0.746
38 H 0.088 0.912
39 H 0.073 0.927
40 H 0.056 0.944
41 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.230 8.509 0.868 14.924
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.094 4.094
3 C -0.204 4.204
4 C 0.024 3.976
5 C -0.238 4.238
6 C 0.010 3.990
7 O -0.374 6.374
8 N -0.292 5.292
9 C -0.001 4.001
10 C 0.026 3.974
11 C -0.512 4.512
12 H 0.059 0.941
13 C -0.173 4.173
14 N -0.552 5.552
15 Si 0.769 3.231
16 H -0.205 1.205
17 H -0.212 1.212
18 H -0.202 1.202
19 C -0.229 4.229
20 C -0.201 4.201
21 H 0.083 0.917
22 H 0.087 0.913
23 H 0.071 0.929
24 H 0.071 0.929
25 H 0.082 0.918
26 H 0.063 0.937
27 H 0.085 0.915
28 H 0.090 0.910
29 H 0.062 0.938
30 H 0.100 0.900
31 H 0.086 0.914
32 H 0.039 0.961
33 H 0.225 0.775
34 H 0.151 0.849
35 H 0.060 0.940
36 H 0.022 0.978
37 H 0.063 0.937
38 H 0.106 0.894
39 H 0.091 0.909
40 H 0.074 0.926
41 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -11.840 8.354 1.326 14.552
hybrid contribution 0.313 -0.964 -0.308 1.059
sum -11.527 7.390 1.018 13.731
Atomic orbital electron populations
1.21914 0.93705 1.01775 1.02601 1.20931 0.96215 0.95727 0.96511
1.21900 1.00679 0.95442 1.02379 1.21065 0.88056 0.93252 0.95262
1.22558 1.03055 1.00735 0.97419 1.22333 0.96834 0.91782 0.88098
1.86660 1.74747 1.28066 1.47883 1.60277 1.04207 1.20067 1.44660
1.21153 0.94017 0.96097 0.88787 1.18975 0.90153 0.95180 0.93135
1.20453 1.39936 0.92087 0.98714 0.94052 1.25484 0.96001 0.98511
0.97322 1.70082 1.50399 1.07522 1.27216 0.85879 0.78784 0.77580
0.80844 1.20469 1.21208 1.20231 1.22975 1.02875 0.91556 1.05486
1.22390 1.02394 0.99986 0.95348 0.91722 0.91326 0.92923 0.92867
0.91802 0.93655 0.91455 0.91021 0.93751 0.89954 0.91392 0.96071
0.77524 0.84921 0.93975 0.97822 0.93691 0.89369 0.90887 0.92554
0.91247
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.94 8.43 71.98 0.61 -2.33 16
2 C -0.07 -2.03 2.34 -10.79 -0.03 -2.06 16
3 C -0.15 -3.44 8.49 71.98 0.61 -2.83 16
4 C 0.11 3.56 0.28 3.53 0.00 3.56 16
5 C -0.18 -4.55 7.60 71.98 0.55 -4.01 16
6 C 0.09 2.81 4.99 71.98 0.36 3.17 16
7 O -0.57 -21.11 13.00 -148.98 -1.94 -23.04 16
8 N -0.66 -26.05 5.75 -470.16 -2.70 -28.75 16
9 C 0.13 5.78 4.72 86.31 0.41 6.19 16
10 C 0.03 1.31 1.55 -52.93 -0.08 1.23 16
11 C -0.47 -26.95 8.75 25.60 0.22 -26.73 16
12 H 0.04 2.42 7.81 -2.91 -0.02 2.39 16
13 C 0.03 1.44 5.42 84.66 0.46 1.90 16
14 N -0.91 -53.70 12.74 21.45 0.27 -53.42 16
15 Si 0.94 46.13 29.54 68.60 2.03 48.16 16
16 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16
17 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16
18 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
19 C -0.19 -8.33 9.96 30.62 0.30 -8.02 16
20 C -0.16 -7.90 9.24 30.62 0.28 -7.62 16
21 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16
22 H 0.07 1.20 6.27 -2.39 -0.01 1.19 16
23 H 0.05 1.11 6.58 -2.39 -0.02 1.09 16
24 H 0.05 1.79 7.89 -2.39 -0.02 1.77 16
25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
26 H 0.04 1.20 6.71 -2.39 -0.02 1.19 16
27 H 0.07 1.36 6.37 -2.39 -0.02 1.34 16
28 H 0.07 1.68 6.37 -2.39 -0.02 1.67 16
29 H 0.04 1.26 6.49 -2.39 -0.02 1.24 16
30 H 0.08 1.67 6.40 -2.38 -0.02 1.66 16
31 H 0.07 1.72 6.25 -2.39 -0.01 1.71 16
32 H 0.02 0.75 6.60 -2.39 -0.02 0.74 16
33 H 0.38 10.96 9.12 -74.05 -0.68 10.29 16
34 H 0.33 12.41 7.00 -89.70 -0.63 11.79 16
35 H 0.04 2.18 6.33 -2.39 -0.02 2.16 16
36 H 0.00 0.17 6.35 -2.39 -0.02 0.15 16
37 H 0.25 14.44 8.32 -92.71 -0.77 13.67 16
38 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16
39 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16
40 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16
41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16
Total: -1.00 -65.17 313.82 1.08 -64.09
By element:
Atomic # 1 Polarization: 30.79 SS G_CDS: -0.28 Total: 30.51 kcal
Atomic # 6 Polarization: -41.24 SS G_CDS: 3.70 Total: -37.54 kcal
Atomic # 7 Polarization: -79.74 SS G_CDS: -2.43 Total: -82.17 kcal
Atomic # 8 Polarization: -21.11 SS G_CDS: -1.94 Total: -23.04 kcal
Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal
Total: -65.17 1.08 -64.09 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000398503991.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.164 kcal
(2) G-P(sol) polarization free energy of solvation -65.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.003 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.091 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.927 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds